Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47245 * 300.00182 * 3 2 1 6 6 H 1.48497 * 109.47058 * 60.00172 * 3 2 1 7 7 C 1.38813 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99755 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46734 * 172.62134 * 10 9 7 12 12 H 1.08994 * 109.99806 * 43.43213 * 11 10 9 13 13 C 1.54318 * 109.77045 * 164.59198 * 11 10 9 14 14 C 1.55158 * 102.86425 * 141.88742 * 13 11 10 15 15 C 1.54915 * 101.57891 * 324.29642 * 14 13 11 16 16 N 1.47027 * 109.88084 * 282.33432 * 11 10 9 17 17 C 1.34770 * 125.64695 * 61.68319 * 16 11 10 18 18 O 1.21642 * 120.00097 * 8.28131 * 17 16 11 19 19 C 1.47146 * 120.00094 * 188.28391 * 17 16 11 20 20 C 1.39028 * 121.09975 * 11.27279 * 19 17 16 21 21 N 1.32078 * 121.40853 * 180.30171 * 20 19 17 22 22 C 1.31822 * 123.59759 * 359.41287 * 21 20 19 23 23 O 1.35259 * 119.61205 * 180.28898 * 22 21 20 24 24 C 1.41180 * 120.77622 * 0.58256 * 22 21 20 25 25 C 1.40129 * 122.10576 * 179.70561 * 24 22 21 26 26 C 1.36356 * 119.50551 * 180.02562 * 25 24 22 27 27 C 1.39183 * 121.05286 * 359.97438 * 26 25 24 28 28 C 1.36514 * 120.89857 * 0.04676 * 27 26 25 29 29 C 1.39620 * 119.43266 * 359.95333 * 28 27 26 30 30 H 0.97002 * 119.99798 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99494 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47212 * 52.62237 * 10 9 7 33 33 H 1.08996 * 109.47056 * 292.62078 * 10 9 7 34 34 H 1.08995 * 110.92961 * 23.46534 * 13 11 10 35 35 H 1.09001 * 110.73790 * 260.21308 * 13 11 10 36 36 H 1.08999 * 111.00107 * 206.22782 * 14 13 11 37 37 H 1.08992 * 111.00576 * 82.37559 * 14 13 11 38 38 H 1.08998 * 110.36842 * 278.17683 * 15 14 13 39 39 H 1.08997 * 110.36414 * 155.84855 * 15 14 13 40 40 H 1.07998 * 119.29786 * 0.02562 * 20 19 17 41 41 H 0.96703 * 113.99520 * 270.29171 * 23 22 21 42 42 H 1.08005 * 120.25048 * 0.02562 * 25 24 22 43 43 H 1.07998 * 119.47343 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.55232 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.28514 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0742 -4.8138 0.1824 12 1 0.1931 -4.6562 -0.4396 13 6 1.7566 -6.1448 -0.1970 14 6 1.1942 -7.1343 0.8574 15 6 1.0954 -6.2297 2.1111 16 7 0.6780 -4.9134 1.5948 17 6 0.0346 -3.9614 2.2991 18 8 -0.4003 -2.9760 1.7337 19 6 -0.1418 -4.1138 3.7519 20 6 0.5370 -5.1005 4.4581 21 7 0.3788 -5.2466 5.7612 22 6 -0.4084 -4.4812 6.4908 23 8 -0.5056 -4.6992 7.8221 24 6 -1.1560 -3.4407 5.8978 25 6 -2.0057 -2.6145 6.6456 26 6 -2.7036 -1.6254 6.0181 27 6 -2.5853 -1.4224 4.6463 28 6 -1.7667 -2.2099 3.8891 29 6 -1.0385 -3.2315 4.5019 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.7795 -3.6598 0.8156 33 1 2.5829 -3.7733 -0.9498 34 1 2.8403 -6.0649 -0.1116 35 1 1.4722 -6.4512 -1.2037 36 1 1.8850 -7.9605 1.0254 37 1 0.2115 -7.5024 0.5628 38 1 2.0656 -6.1543 2.6020 39 1 0.3487 -6.6200 2.8026 40 1 1.2045 -5.7646 3.9291 41 1 -1.2023 -5.3228 8.0687 42 1 -2.1070 -2.7602 7.7109 43 1 -3.3586 -0.9892 6.5949 44 1 -3.1491 -0.6314 4.1742 45 1 -1.6821 -2.0434 2.8254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483946914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 33.184437 kcal Electronic energy + Delta-G solvation = -30363.668800 eV Core-core repulsion = 26348.195441 eV Total energy + Delta-G solvation = -4015.473359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07318 -39.74789 -38.03116 -37.06517 -36.70978 -34.30846 -32.22501 -31.54982 -31.25698 -31.12533 -29.37662 -28.52009 -25.45916 -24.56240 -23.62299 -23.10336 -22.55799 -21.53819 -20.90754 -19.29999 -18.94467 -17.78483 -17.65247 -16.86298 -16.41800 -16.35295 -15.77736 -15.16883 -14.86059 -14.51396 -14.28570 -14.15321 -13.75478 -13.59660 -13.47591 -13.31714 -13.00654 -12.91417 -12.71446 -12.31880 -12.06321 -12.01207 -11.94105 -11.72379 -11.54311 -11.26482 -11.15833 -11.00988 -10.73361 -10.63573 -10.48438 -9.91185 -9.83585 -9.68533 -9.50346 -9.08817 -8.95351 -8.71384 -8.22506 -7.95295 -6.64415 -5.52109 -2.79512 0.06534 0.88946 1.74673 2.79108 3.16796 3.39629 3.49016 3.52863 3.58223 3.60079 4.08460 4.36638 4.48540 4.59471 4.65952 4.71921 4.80532 4.89535 4.92243 5.01396 5.10990 5.27987 5.30710 5.36624 5.44012 5.52055 5.64053 5.72167 5.72615 5.76440 5.83867 5.94865 5.96229 6.04897 6.15935 6.21335 6.30496 6.42748 6.52624 6.58662 6.65391 6.80718 6.96468 6.98174 7.26313 7.79082 7.84930 7.88375 8.58985 8.74079 9.78431 10.41734 10.80792 11.68869 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.004976 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.316337 B = 5625.924470 C = 8034.034153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.062 0.938 9 N -0.722 5.722 10 C 0.145 3.855 11 C 0.132 3.868 12 H 0.078 0.922 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.087 3.913 16 N -0.612 5.612 17 C 0.567 3.433 18 O -0.459 6.459 19 C -0.159 4.159 20 C 0.106 3.894 21 N -0.516 5.516 22 C 0.368 3.632 23 O -0.476 6.476 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.116 4.116 27 C -0.097 4.097 28 C -0.096 4.096 29 C 0.020 3.980 30 H 0.249 0.751 31 H 0.398 0.602 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.181 0.819 41 H 0.402 0.598 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -16.193 11.231 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.080 0.920 9 N -0.372 5.372 10 C 0.016 3.984 11 C 0.029 3.971 12 H 0.096 0.904 13 C -0.163 4.163 14 C -0.170 4.170 15 C -0.036 4.036 16 N -0.349 5.349 17 C 0.354 3.646 18 O -0.331 6.331 19 C -0.165 4.165 20 C -0.038 4.038 21 N -0.235 5.235 22 C 0.175 3.825 23 O -0.284 6.284 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.113 4.113 29 C 0.015 3.985 30 H 0.059 0.941 31 H 0.238 0.762 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.197 0.803 41 H 0.261 0.739 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.117 -15.720 11.333 19.812 hybrid contribution -0.363 1.351 -0.090 1.402 sum -4.480 -14.369 11.243 18.787 Atomic orbital electron populations 1.69742 1.04726 1.24534 1.57503 1.24655 0.95377 0.97046 1.03464 0.86287 0.78832 0.85109 0.77013 1.20852 1.22086 1.22163 1.19183 0.90593 0.84602 1.42441 0.91984 1.42683 1.06885 0.98977 1.88605 1.21033 0.93288 0.86459 0.97664 1.21903 0.98285 0.95561 0.81322 0.90437 1.22647 1.00891 0.93445 0.99312 1.22792 1.02039 0.97413 0.94758 1.22678 0.99778 0.83948 0.97236 1.48282 1.58921 1.15467 1.12222 1.17313 0.79383 0.82744 0.85163 1.90854 1.45309 1.27313 1.69579 1.21985 1.01145 0.98351 0.94971 1.23524 0.96732 0.95540 0.88000 1.66617 1.19368 1.29322 1.08169 1.19398 0.89787 0.89556 0.83743 1.84639 1.59929 1.66909 1.16901 1.18859 1.00699 0.99972 0.93505 1.20807 0.95802 0.95053 0.99640 1.21005 0.99540 0.97844 0.95048 1.21235 0.97792 0.98933 0.93682 1.21961 0.93054 0.92375 1.03940 1.18828 0.94297 0.94484 0.90937 0.94133 0.76224 0.96227 0.96280 0.90244 0.90019 0.89895 0.90569 0.90958 0.90259 0.80285 0.73892 0.84853 0.85588 0.85116 0.80798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.95 13.06 55.49 0.72 -28.22 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 23.60 29.55 -169.99 -5.02 18.58 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 6 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 8 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -19.47 4.46 -59.91 -0.27 -19.74 16 10 C 0.14 3.04 5.60 -4.04 -0.02 3.02 16 11 C 0.13 2.18 3.01 -66.95 -0.20 1.98 16 12 H 0.08 1.40 8.07 -51.93 -0.42 0.99 16 13 C -0.12 -1.39 6.42 -24.90 -0.16 -1.55 16 14 C -0.13 -1.18 7.08 -24.58 -0.17 -1.35 16 15 C 0.09 0.95 4.90 -2.53 -0.01 0.94 16 16 N -0.61 -9.79 3.07 -164.37 -0.50 -10.29 16 17 C 0.57 10.91 7.43 -12.65 -0.09 10.82 16 18 O -0.46 -10.87 10.69 5.24 0.06 -10.81 16 19 C -0.16 -2.73 6.01 -102.68 -0.62 -3.34 16 20 C 0.11 1.54 9.46 -17.15 -0.16 1.38 16 21 N -0.52 -7.53 10.25 -12.66 -0.13 -7.66 16 22 C 0.37 5.04 7.79 -16.44 -0.13 4.91 16 23 O -0.48 -5.02 12.80 -17.47 -0.22 -5.25 16 24 C -0.13 -1.85 5.75 -106.78 -0.61 -2.46 16 25 C -0.09 -1.13 9.58 -39.55 -0.38 -1.51 16 26 C -0.12 -1.40 9.95 -39.91 -0.40 -1.80 16 27 C -0.10 -1.42 9.96 -39.85 -0.40 -1.81 16 28 C -0.10 -1.71 9.31 -39.69 -0.37 -2.08 16 29 C 0.02 0.34 5.90 -104.77 -0.62 -0.28 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.40 11.43 5.24 -40.82 -0.21 11.22 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.73 7.11 -51.93 -0.37 0.36 16 39 H 0.08 0.78 6.39 -51.93 -0.33 0.45 16 40 H 0.18 2.16 3.59 -52.49 -0.19 1.98 16 41 H 0.40 2.00 9.06 45.56 0.41 2.41 16 42 H 0.13 1.22 7.66 -52.48 -0.40 0.82 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.18 3.68 5.33 -52.49 -0.28 3.40 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -37.60 362.03 -9.21 -46.81 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.70 Total: 11.84 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -4.59 Total: -0.71 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.18 Total: -65.91 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.17 Total: -16.06 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.60 -9.21 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483946914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.994 kcal (2) G-P(sol) polarization free energy of solvation -37.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds