Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47245 * 300.00182 * 3 2 1 6 6 H 1.48497 * 109.47058 * 60.00172 * 3 2 1 7 7 C 1.38813 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99755 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46734 * 172.62134 * 10 9 7 12 12 H 1.08994 * 109.99806 * 43.43213 * 11 10 9 13 13 C 1.54318 * 109.77045 * 164.59198 * 11 10 9 14 14 C 1.55158 * 102.86425 * 141.88742 * 13 11 10 15 15 C 1.54915 * 101.57891 * 324.29642 * 14 13 11 16 16 N 1.47027 * 109.88084 * 282.33432 * 11 10 9 17 17 C 1.34770 * 125.64695 * 61.68319 * 16 11 10 18 18 O 1.21642 * 120.00097 * 8.28131 * 17 16 11 19 19 C 1.47146 * 120.00094 * 188.28391 * 17 16 11 20 20 C 1.39028 * 121.09975 * 11.27279 * 19 17 16 21 21 N 1.32078 * 121.40853 * 180.30171 * 20 19 17 22 22 C 1.31822 * 123.59759 * 359.41287 * 21 20 19 23 23 O 1.35259 * 119.61205 * 180.28898 * 22 21 20 24 24 C 1.41180 * 120.77622 * 0.58256 * 22 21 20 25 25 C 1.40129 * 122.10576 * 179.70561 * 24 22 21 26 26 C 1.36356 * 119.50551 * 180.02562 * 25 24 22 27 27 C 1.39183 * 121.05286 * 359.97438 * 26 25 24 28 28 C 1.36514 * 120.89857 * 0.04676 * 27 26 25 29 29 C 1.39620 * 119.43266 * 359.95333 * 28 27 26 30 30 H 0.97002 * 119.99798 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99494 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47212 * 52.62237 * 10 9 7 33 33 H 1.08996 * 109.47056 * 292.62078 * 10 9 7 34 34 H 1.08995 * 110.92961 * 23.46534 * 13 11 10 35 35 H 1.09001 * 110.73790 * 260.21308 * 13 11 10 36 36 H 1.08999 * 111.00107 * 206.22782 * 14 13 11 37 37 H 1.08992 * 111.00576 * 82.37559 * 14 13 11 38 38 H 1.08998 * 110.36842 * 278.17683 * 15 14 13 39 39 H 1.08997 * 110.36414 * 155.84855 * 15 14 13 40 40 H 1.07998 * 119.29786 * 0.02562 * 20 19 17 41 41 H 0.96703 * 113.99520 * 270.29171 * 23 22 21 42 42 H 1.08005 * 120.25048 * 0.02562 * 25 24 22 43 43 H 1.07998 * 119.47343 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.55232 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.28514 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0742 -4.8138 0.1824 12 1 0.1931 -4.6562 -0.4396 13 6 1.7566 -6.1448 -0.1970 14 6 1.1942 -7.1343 0.8574 15 6 1.0954 -6.2297 2.1111 16 7 0.6780 -4.9134 1.5948 17 6 0.0346 -3.9614 2.2991 18 8 -0.4003 -2.9760 1.7337 19 6 -0.1418 -4.1138 3.7519 20 6 0.5370 -5.1005 4.4581 21 7 0.3788 -5.2466 5.7612 22 6 -0.4084 -4.4812 6.4908 23 8 -0.5056 -4.6992 7.8221 24 6 -1.1560 -3.4407 5.8978 25 6 -2.0057 -2.6145 6.6456 26 6 -2.7036 -1.6254 6.0181 27 6 -2.5853 -1.4224 4.6463 28 6 -1.7667 -2.2099 3.8891 29 6 -1.0385 -3.2315 4.5019 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.7795 -3.6598 0.8156 33 1 2.5829 -3.7733 -0.9498 34 1 2.8403 -6.0649 -0.1116 35 1 1.4722 -6.4512 -1.2037 36 1 1.8850 -7.9605 1.0254 37 1 0.2115 -7.5024 0.5628 38 1 2.0656 -6.1543 2.6020 39 1 0.3487 -6.6200 2.8026 40 1 1.2045 -5.7646 3.9291 41 1 -1.2023 -5.3228 8.0687 42 1 -2.1070 -2.7602 7.7109 43 1 -3.3586 -0.9892 6.5949 44 1 -3.1491 -0.6314 4.1742 45 1 -1.6821 -2.0434 2.8254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483946914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 3.447515 kcal Electronic energy + Delta-G solvation = -30364.958290 eV Core-core repulsion = 26348.195441 eV Total energy + Delta-G solvation = -4016.762849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20543 -40.94822 -39.07259 -38.30759 -37.80396 -36.24650 -33.66549 -32.98163 -32.59703 -32.25303 -30.74621 -29.86167 -26.93141 -25.98586 -24.84122 -24.41755 -23.96898 -22.90815 -21.94739 -20.39773 -20.21140 -19.23485 -18.73554 -18.57168 -17.58785 -17.53298 -16.81132 -16.72098 -16.39491 -15.96408 -15.44991 -15.39671 -15.22779 -14.89785 -14.74404 -14.67340 -14.48918 -14.26094 -13.80659 -13.60043 -13.34781 -13.16289 -13.09721 -12.98809 -12.92018 -12.89189 -12.68793 -12.41300 -12.23473 -11.98540 -11.86358 -11.61350 -11.51102 -10.98869 -10.94229 -10.83984 -10.32278 -10.19932 -9.57809 -9.08442 -8.83589 -7.83423 -5.11310 -1.05360 -0.22778 0.61122 1.39339 1.41791 1.50887 1.65728 1.95997 2.22585 2.40137 2.56188 2.92871 3.31732 3.43183 3.45122 3.55613 3.66581 3.68568 3.83154 3.94454 4.02276 4.09868 4.21670 4.28658 4.32552 4.40052 4.44280 4.52396 4.58376 4.64599 4.79414 4.81945 4.87546 4.93032 5.02126 5.08742 5.14885 5.18317 5.26864 5.39818 5.43147 5.47813 5.49321 5.61158 5.83053 6.34264 6.50663 6.59647 6.72143 7.29483 7.46520 8.28909 8.54536 9.38264 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.004976 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.316337 B = 5625.924470 C = 8034.034153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.072 4.072 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.298 1.298 7 C -0.246 4.246 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.142 3.858 11 C 0.133 3.867 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.075 3.925 16 N -0.612 5.612 17 C 0.556 3.444 18 O -0.521 6.521 19 C -0.200 4.200 20 C 0.128 3.872 21 N -0.530 5.530 22 C 0.391 3.609 23 O -0.471 6.471 24 C -0.144 4.144 25 C -0.073 4.073 26 C -0.117 4.117 27 C -0.091 4.091 28 C -0.142 4.142 29 C 0.002 3.998 30 H 0.244 0.756 31 H 0.386 0.614 32 H 0.012 0.988 33 H 0.029 0.971 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.204 0.796 41 H 0.430 0.570 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.137 0.863 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 -18.515 14.171 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.265 4.265 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.226 1.226 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.384 5.384 10 C 0.014 3.986 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.046 4.046 16 N -0.347 5.347 17 C 0.345 3.655 18 O -0.397 6.397 19 C -0.205 4.205 20 C -0.015 4.015 21 N -0.250 5.250 22 C 0.198 3.802 23 O -0.283 6.283 24 C -0.148 4.148 25 C -0.092 4.092 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.160 4.160 29 C -0.003 4.003 30 H 0.053 0.947 31 H 0.224 0.776 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.220 0.780 41 H 0.295 0.705 42 H 0.193 0.807 43 H 0.185 0.815 44 H 0.155 0.845 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.140 -18.140 14.292 23.306 hybrid contribution -0.685 2.001 -0.859 2.283 sum -3.825 -16.139 13.433 21.343 Atomic orbital electron populations 1.69948 1.06327 1.24861 1.59021 1.25489 0.96296 1.00545 1.04142 0.85213 0.78207 0.80615 0.76599 1.19314 1.21631 1.22592 1.19574 0.90833 0.86085 1.41309 0.91827 1.42920 1.06674 1.00368 1.88486 1.21244 0.93969 0.85986 0.97389 1.21865 0.96532 0.96854 0.81805 0.93170 1.22646 1.01034 0.90535 1.01019 1.22816 1.03279 0.97165 0.92063 1.23059 1.00850 0.81786 0.98898 1.48397 1.57659 1.16727 1.11952 1.17850 0.78854 0.82500 0.86343 1.90835 1.48088 1.29896 1.70880 1.21886 1.03878 1.00796 0.93959 1.23839 0.95310 0.94256 0.88134 1.66787 1.20394 1.29876 1.07915 1.19503 0.87890 0.88169 0.84622 1.84582 1.61244 1.67970 1.14480 1.19094 1.01994 1.01223 0.92450 1.21311 0.93403 0.93226 1.01263 1.21364 1.00030 0.98471 0.93627 1.21469 0.96357 0.97936 0.95253 1.21642 0.96621 0.95384 1.02367 1.19014 0.94396 0.94373 0.92508 0.94731 0.77597 0.97043 0.95348 0.89118 0.88329 0.85990 0.89979 0.89256 0.88791 0.77999 0.70522 0.80722 0.81492 0.84508 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.86 13.06 21.65 0.28 -63.58 16 2 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.96 50.43 29.55 68.60 2.03 52.46 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 6 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 7 C -0.25 -15.29 9.99 84.03 0.84 -14.45 16 8 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -42.32 4.46 -343.46 -1.53 -43.85 16 10 C 0.14 6.23 5.60 86.38 0.48 6.71 16 11 C 0.13 4.54 3.01 45.34 0.14 4.68 16 12 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 13 C -0.11 -2.33 6.42 31.78 0.20 -2.13 16 14 C -0.12 -1.67 7.08 31.99 0.23 -1.45 16 15 C 0.08 1.51 4.90 86.86 0.43 1.94 16 16 N -0.61 -20.31 3.07 -792.20 -2.43 -22.74 16 17 C 0.56 23.22 7.43 86.58 0.64 23.87 16 18 O -0.52 -27.59 10.69 -4.16 -0.04 -27.63 16 19 C -0.20 -7.21 6.01 -18.60 -0.11 -7.32 16 20 C 0.13 3.64 9.46 84.85 0.80 4.45 16 21 N -0.53 -14.39 10.25 -307.29 -3.15 -17.54 16 22 C 0.39 9.71 7.79 85.42 0.67 10.37 16 23 O -0.47 -7.90 12.80 -85.43 -1.09 -8.99 16 24 C -0.14 -4.03 5.75 -21.26 -0.12 -4.15 16 25 C -0.07 -1.54 9.58 22.29 0.21 -1.33 16 26 C -0.12 -2.59 9.95 22.06 0.22 -2.37 16 27 C -0.09 -2.78 9.96 22.09 0.22 -2.56 16 28 C -0.14 -5.61 9.31 22.20 0.21 -5.41 16 29 C 0.00 0.07 5.90 -19.96 -0.12 -0.04 16 30 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.39 24.12 5.24 -92.71 -0.49 23.63 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 34 H 0.09 1.69 7.86 -2.39 -0.02 1.67 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.54 7.11 -2.39 -0.02 1.52 16 39 H 0.09 1.65 6.39 -2.39 -0.02 1.63 16 40 H 0.20 4.52 3.59 -2.91 -0.01 4.51 16 41 H 0.43 2.14 9.06 -74.05 -0.67 1.47 16 42 H 0.18 2.24 7.66 -2.91 -0.02 2.22 16 43 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.13 6.27 5.33 -2.91 -0.02 6.25 16 Total: -1.00 -90.91 362.03 -0.62 -91.53 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.09 Total: 33.61 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.40 Total: 6.73 kcal Atomic # 7 Polarization: -140.88 SS G_CDS: -6.83 Total: -147.70 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.14 Total: -36.63 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.03 Total: 52.46 kcal Total: -90.91 -0.62 -91.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483946914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.981 kcal (2) G-P(sol) polarization free energy of solvation -90.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds