Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48501 * 109.47296 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46835 * 119.99865 * 3 2 1 6 6 H 1.48497 * 109.47238 * 239.99874 * 3 2 1 7 7 C 1.38810 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46865 * 187.58688 * 10 9 7 12 12 H 1.08997 * 109.87676 * 311.63181 * 11 10 9 13 13 C 1.54325 * 109.87842 * 190.61206 * 11 10 9 14 14 C 1.55150 * 102.94448 * 218.39097 * 13 11 10 15 15 C 1.54912 * 101.58176 * 35.50647 * 14 13 11 16 16 N 1.47028 * 109.88097 * 72.81030 * 11 10 9 17 17 C 1.34778 * 125.64593 * 298.31052 * 16 11 10 18 18 O 1.21643 * 120.00046 * 4.99771 * 17 16 11 19 19 C 1.47145 * 119.99541 * 185.00136 * 17 16 11 20 20 C 1.39030 * 121.10333 * 334.04569 * 19 17 16 21 21 N 1.32070 * 121.40799 * 179.70376 * 20 19 17 22 22 C 1.31831 * 123.59973 * 0.60453 * 21 20 19 23 23 O 1.35261 * 119.61017 * 179.67589 * 22 21 20 24 24 C 1.41176 * 120.77581 * 359.69250 * 22 21 20 25 25 C 1.40125 * 122.10857 * 180.02562 * 24 22 21 26 26 C 1.36360 * 119.50805 * 179.97438 * 25 24 22 27 27 C 1.39187 * 121.05044 * 359.97438 * 26 25 24 28 28 C 1.36508 * 120.89446 * 0.04175 * 27 26 25 29 29 C 1.39613 * 119.44123 * 359.95926 * 28 27 26 30 30 H 0.97001 * 120.00162 * 179.97438 * 1 2 3 31 31 H 0.96997 * 119.99904 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.46609 * 307.58777 * 10 9 7 33 33 H 1.08999 * 109.46913 * 67.58927 * 10 9 7 34 34 H 1.08999 * 110.72231 * 336.75857 * 13 11 10 35 35 H 1.09000 * 110.71585 * 100.02690 * 13 11 10 36 36 H 1.08997 * 111.00530 * 153.57795 * 14 13 11 37 37 H 1.09001 * 111.00441 * 277.39703 * 14 13 11 38 38 H 1.08999 * 110.37029 * 81.82502 * 15 14 13 39 39 H 1.08998 * 110.36878 * 204.04188 * 15 14 13 40 40 H 1.07998 * 119.29463 * 359.97342 * 20 19 17 41 41 H 0.96696 * 113.99486 * 270.01517 * 23 22 21 42 42 H 1.08001 * 120.24948 * 359.96130 * 25 24 22 43 43 H 1.07998 * 119.47251 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.54764 * 180.02562 * 27 26 25 45 45 H 1.08011 * 120.28203 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0747 -4.8135 -0.1890 12 1 0.2326 -4.7003 0.4936 13 6 1.7873 -6.1568 0.0745 14 6 1.1772 -7.0911 -1.0035 15 6 0.9980 -6.1167 -2.1943 16 7 0.5959 -4.8387 -1.5789 17 6 -0.0966 -3.8566 -2.1891 18 8 -0.2966 -2.8045 -1.6121 19 6 -0.6108 -4.0570 -3.5531 20 6 0.0009 -4.9482 -4.4275 21 7 -0.4589 -5.1371 -5.6510 22 6 -1.5055 -4.5041 -6.1429 23 8 -1.9034 -4.7554 -7.4110 24 6 -2.2156 -3.5668 -5.3617 25 6 -3.3318 -2.8787 -5.8559 26 6 -3.9786 -1.9848 -5.0547 27 6 -3.5483 -1.7450 -3.7529 28 6 -2.4644 -2.3984 -3.2415 29 6 -1.7804 -3.3199 -4.0366 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.7831 -3.6584 -0.8121 33 1 2.5782 -3.7752 0.9522 34 1 2.8635 -6.0567 -0.0662 35 1 1.5607 -6.5235 1.0756 36 1 1.8664 -7.8963 -1.2579 37 1 0.2170 -7.4902 -0.6765 38 1 1.9382 -5.9990 -2.7331 39 1 0.2192 -6.4777 -2.8661 40 1 0.8680 -5.5011 -4.0976 41 1 -1.4911 -4.1838 -8.0730 42 1 -3.6771 -3.0548 -6.8639 43 1 -4.8390 -1.4550 -5.4360 44 1 -4.0790 -1.0320 -3.1393 45 1 -2.1392 -2.2050 -2.2298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483946919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = 35.914738 kcal Electronic energy + Delta-G solvation = -30457.429896 eV Core-core repulsion = 26442.074932 eV Total energy + Delta-G solvation = -4015.354965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.13152 -39.82075 -38.07679 -37.13889 -36.76740 -34.51310 -32.29251 -31.58406 -31.27359 -31.18588 -29.34742 -28.40888 -25.34778 -24.42302 -23.65027 -23.11065 -22.64538 -21.69791 -20.95761 -19.35878 -18.91239 -17.85220 -17.72598 -16.97566 -16.52663 -16.48731 -15.76483 -15.37250 -15.00416 -14.62791 -14.23307 -14.07729 -13.84441 -13.64328 -13.47575 -13.30437 -13.25287 -12.98516 -12.88667 -12.43943 -12.15400 -12.07719 -12.00920 -11.88039 -11.57701 -11.31295 -11.14612 -10.90067 -10.66274 -10.57044 -10.36289 -9.92308 -9.85259 -9.72909 -9.15519 -9.10560 -8.82466 -8.65348 -8.27524 -8.01598 -6.61352 -5.80074 -2.74297 0.01610 0.82247 1.67353 2.73077 3.09740 3.34467 3.36041 3.61796 3.66787 3.83555 4.00510 4.31603 4.42175 4.53767 4.60011 4.69236 4.82339 4.86029 4.90180 4.96129 5.03788 5.23460 5.25514 5.32968 5.38897 5.45583 5.56969 5.65422 5.68601 5.76759 5.85414 5.88465 5.91521 5.98258 6.07588 6.15645 6.23411 6.35071 6.42380 6.49623 6.55752 6.75531 6.85881 6.90553 7.21763 7.73192 7.78687 8.04091 8.57517 9.13504 9.68185 10.50049 10.69115 11.71278 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004827 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.155247 B = 5799.541378 C = 8031.938482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.042 4.042 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.300 1.300 7 C -0.327 4.327 8 H 0.052 0.948 9 N -0.730 5.730 10 C 0.151 3.849 11 C 0.130 3.870 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.086 3.914 16 N -0.609 5.609 17 C 0.563 3.437 18 O -0.460 6.460 19 C -0.159 4.159 20 C 0.115 3.885 21 N -0.515 5.515 22 C 0.369 3.631 23 O -0.477 6.477 24 C -0.126 4.126 25 C -0.091 4.091 26 C -0.116 4.116 27 C -0.093 4.093 28 C -0.095 4.095 29 C 0.021 3.979 30 H 0.264 0.736 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.173 0.827 41 H 0.405 0.595 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -14.427 -11.185 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.241 4.241 3 Si 0.907 3.093 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.228 1.228 7 C -0.459 4.459 8 H 0.070 0.930 9 N -0.384 5.384 10 C 0.022 3.978 11 C 0.027 3.973 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.037 4.037 16 N -0.345 5.345 17 C 0.350 3.650 18 O -0.332 6.332 19 C -0.164 4.164 20 C -0.029 4.029 21 N -0.234 5.234 22 C 0.176 3.824 23 O -0.285 6.285 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.113 4.113 28 C -0.112 4.112 29 C 0.015 3.985 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.190 0.810 41 H 0.264 0.736 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.782 -13.108 -11.111 17.837 hybrid contribution 0.073 -0.811 0.017 0.815 sum -4.709 -13.920 -11.094 18.412 Atomic orbital electron populations 1.70713 1.05870 1.29220 1.53052 1.25500 0.97232 1.00221 1.01142 0.83338 0.74194 0.76314 0.75498 1.21253 1.22655 1.22823 1.19935 0.91346 0.86444 1.48189 0.92976 1.42912 1.06298 0.99655 1.89574 1.20900 0.93101 0.86283 0.97551 1.21948 0.97373 0.95832 0.82119 0.90846 1.22640 1.00621 0.93529 0.99448 1.22775 1.01789 0.97252 0.95159 1.22683 0.99986 0.84363 0.96660 1.48299 1.55659 1.17067 1.13495 1.17377 0.79308 0.83306 0.84977 1.90804 1.54603 1.23433 1.64315 1.21946 0.98014 1.00259 0.96168 1.23087 0.98406 0.94339 0.87062 1.66588 1.13900 1.26337 1.16570 1.19362 0.88336 0.88510 0.86158 1.84599 1.67155 1.63125 1.13628 1.18841 0.99659 0.99666 0.94768 1.20830 0.94129 0.95838 1.00231 1.21006 1.00121 0.98018 0.94261 1.21213 0.96102 0.98521 0.95421 1.21619 0.93783 0.93575 1.02270 1.18779 0.93019 0.94722 0.91938 0.92435 0.77316 0.96306 0.96511 0.90205 0.90028 0.89843 0.90609 0.91047 0.90198 0.80996 0.73623 0.84727 0.85424 0.84969 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.78 13.70 55.49 0.76 -30.02 16 2 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 3 Si 1.07 27.74 29.92 -169.99 -5.09 22.65 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.33 -9.98 9.99 -15.06 -0.15 -10.13 16 8 H 0.05 1.57 7.83 -52.48 -0.41 1.16 16 9 N -0.73 -19.93 4.10 -59.90 -0.25 -20.18 16 10 C 0.15 3.25 5.63 -4.03 -0.02 3.22 16 11 C 0.13 2.17 3.11 -66.95 -0.21 1.96 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.12 -1.42 6.46 -24.90 -0.16 -1.58 16 14 C -0.13 -1.22 7.08 -24.59 -0.17 -1.40 16 15 C 0.09 0.98 5.04 -2.53 -0.01 0.97 16 16 N -0.61 -9.86 3.06 -164.36 -0.50 -10.37 16 17 C 0.56 10.87 7.38 -12.65 -0.09 10.78 16 18 O -0.46 -10.99 9.79 5.24 0.05 -10.94 16 19 C -0.16 -2.69 5.91 -102.68 -0.61 -3.29 16 20 C 0.12 1.67 9.15 -17.16 -0.16 1.52 16 21 N -0.52 -7.45 10.25 -12.66 -0.13 -7.58 16 22 C 0.37 4.95 7.79 -16.44 -0.13 4.82 16 23 O -0.48 -4.89 12.80 -17.48 -0.22 -5.12 16 24 C -0.13 -1.79 5.75 -106.78 -0.61 -2.40 16 25 C -0.09 -1.06 9.58 -39.55 -0.38 -1.43 16 26 C -0.12 -1.34 9.95 -39.91 -0.40 -1.74 16 27 C -0.09 -1.31 9.96 -39.85 -0.40 -1.71 16 28 C -0.09 -1.64 9.27 -39.69 -0.37 -2.01 16 29 C 0.02 0.34 5.90 -104.77 -0.62 -0.27 16 30 H 0.26 8.62 6.34 -40.82 -0.26 8.36 16 31 H 0.38 10.86 3.76 -40.94 -0.15 10.71 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.74 7.43 -51.93 -0.39 0.36 16 39 H 0.08 0.84 5.98 -51.93 -0.31 0.53 16 40 H 0.17 2.12 4.45 -52.49 -0.23 1.88 16 41 H 0.40 2.12 9.06 45.56 0.41 2.53 16 42 H 0.13 1.18 7.66 -52.49 -0.40 0.77 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.16 3.28 5.71 -52.48 -0.30 2.98 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -38.86 359.38 -9.17 -48.03 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -4.63 Total: 12.21 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.58 Total: -4.11 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.12 Total: -68.14 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.17 Total: -16.06 kcal Atomic # 14 Polarization: 27.74 SS G_CDS: -5.09 Total: 22.65 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.86 -9.17 -48.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483946919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.943 kcal (2) G-P(sol) polarization free energy of solvation -38.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds