Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48495 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47103 * 300.00185 * 3 2 1 6 6 H 1.48506 * 109.47247 * 59.99604 * 3 2 1 7 7 C 1.38816 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64817 * 359.96017 * 9 7 2 11 11 C 1.54908 * 104.83145 * 204.16616 * 10 9 7 12 12 C 1.55165 * 101.58083 * 322.98904 * 11 10 9 13 13 O 1.42901 * 110.86712 * 277.07069 * 12 11 10 14 14 C 1.53000 * 110.72135 * 153.86924 * 12 11 10 15 15 N 1.46499 * 109.47075 * 190.02092 * 14 12 11 16 16 C 1.34773 * 119.99941 * 179.97438 * 15 14 12 17 17 O 1.21569 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.47753 * 120.00011 * 180.02562 * 16 15 14 19 19 C 1.40608 * 120.27113 * 359.97438 * 18 16 15 20 20 N 1.30793 * 121.54103 * 180.02562 * 19 18 16 21 21 C 1.33824 * 121.72489 * 0.02562 * 20 19 18 22 22 C 1.40522 * 120.83079 * 180.27697 * 21 20 19 23 23 C 1.36131 * 119.81720 * 180.20779 * 22 21 20 24 24 C 1.39346 * 121.08751 * 359.48811 * 23 22 21 25 25 C 1.36142 * 120.83376 * 0.28651 * 24 23 22 26 26 C 1.40539 * 119.61685 * 359.97284 * 25 24 23 27 27 C 1.39012 * 120.27373 * 180.02562 * 18 16 15 28 28 C 1.47026 * 125.65222 * 179.97438 * 9 7 2 29 29 H 0.97003 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.36282 * 322.99847 * 10 9 7 31 31 H 1.08993 * 110.36805 * 85.32171 * 10 9 7 32 32 H 1.08995 * 111.00291 * 204.91815 * 11 10 9 33 33 H 1.08998 * 111.01141 * 81.06203 * 11 10 9 34 34 H 0.96709 * 113.99657 * 177.45539 * 13 12 11 35 35 H 1.09002 * 109.47056 * 70.02154 * 14 12 11 36 36 H 1.09002 * 109.47015 * 310.02073 * 14 12 11 37 37 H 0.96998 * 120.00000 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.22712 * 0.02562 * 19 18 16 39 39 H 1.07994 * 120.09118 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.45951 * 179.75416 * 23 22 21 41 41 H 1.08009 * 119.58613 * 180.26202 * 24 23 22 42 42 H 1.07997 * 120.18952 * 179.97438 * 25 24 23 43 43 H 1.08000 * 121.01223 * 0.02562 * 27 18 16 44 44 H 1.09003 * 109.88163 * 59.48529 * 28 9 7 45 45 H 1.08999 * 109.88014 * 298.32676 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4015 -3.9319 0.6138 12 6 0.7785 -4.7524 0.0290 13 8 0.4761 -5.2094 -1.2907 14 6 1.1234 -5.9307 0.9420 15 7 2.3790 -6.5411 0.4982 16 6 2.8822 -7.6030 1.1582 17 8 2.2939 -8.0546 2.1214 18 6 4.1489 -8.2183 0.7109 19 6 4.8338 -7.7009 -0.4027 20 7 5.9564 -8.2263 -0.8203 21 6 6.5093 -9.2814 -0.2104 22 6 7.7192 -9.8274 -0.6716 23 6 8.2611 -10.9036 -0.0381 24 6 7.6410 -11.4722 1.0726 25 6 6.4704 -10.9690 1.5521 26 6 5.8796 -9.8617 0.9196 27 6 4.6728 -9.3141 1.3871 28 6 1.9318 -3.7275 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5992 -1.7584 0.6161 31 1 -0.5275 -2.4875 -1.0175 32 1 -1.3589 -4.3326 0.2807 33 1 -0.3517 -3.8971 1.7020 34 1 1.1978 -5.6942 -1.7141 35 1 0.3242 -6.6706 0.8979 36 1 1.2340 -5.5761 1.9668 37 1 2.8486 -6.1805 -0.2701 38 1 4.4233 -6.8497 -0.9256 39 1 8.2159 -9.3967 -1.5284 40 1 9.1892 -11.3211 -0.3998 41 1 8.0945 -12.3232 1.5592 42 1 5.9985 -11.4181 2.4135 43 1 4.1671 -9.7326 2.2447 44 1 2.5588 -3.8506 0.8836 45 1 2.5277 -3.8647 -0.9018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484240716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 4.320846 kcal Electronic energy + Delta-G solvation = -28612.311633 eV Core-core repulsion = 24595.586654 eV Total energy + Delta-G solvation = -4016.724978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33204 -39.89765 -38.52602 -37.27201 -35.20635 -34.37152 -33.81850 -32.16567 -31.25238 -30.47085 -29.57969 -28.22055 -26.01006 -24.85197 -24.45590 -23.36498 -22.49812 -21.35120 -20.19962 -19.95753 -18.81390 -18.23745 -17.61221 -16.96150 -16.53411 -16.08167 -15.59549 -15.48161 -14.98636 -14.78735 -14.71760 -14.60069 -14.16213 -14.12878 -13.81689 -13.78173 -13.42496 -13.26971 -12.96851 -12.37745 -12.21866 -12.14994 -12.12115 -11.90895 -11.61594 -11.06864 -10.91220 -10.90438 -10.81877 -10.58034 -10.32765 -10.13916 -9.99603 -9.74030 -9.73872 -9.45984 -9.32893 -9.13260 -8.70610 -8.67968 -6.88809 -5.68886 -3.11323 -0.16243 0.21513 1.47177 2.20327 2.89920 2.97696 3.37999 3.43361 3.45973 3.72251 3.78578 4.14845 4.28699 4.36916 4.38425 4.43171 4.44165 4.57720 4.68675 4.76313 4.87043 4.99354 5.13952 5.32939 5.34673 5.44996 5.45875 5.47187 5.59733 5.60970 5.82350 5.86890 5.92699 5.96715 6.04071 6.18376 6.21955 6.35195 6.36382 6.46535 6.55664 6.58482 7.24509 7.45340 7.53823 7.58571 7.81383 7.89388 7.97075 8.31555 9.17586 9.77993 10.41907 11.34922 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002316 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.716362 B =12085.694443 C =13146.574495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.155 3.845 11 C -0.127 4.127 12 C 0.104 3.896 13 O -0.542 6.542 14 C 0.104 3.896 15 N -0.719 5.719 16 C 0.565 3.435 17 O -0.535 6.535 18 C -0.192 4.192 19 C 0.163 3.837 20 N -0.473 5.473 21 C 0.142 3.858 22 C -0.098 4.098 23 C -0.092 4.092 24 C -0.121 4.121 25 C -0.085 4.085 26 C -0.114 4.114 27 C 0.013 3.987 28 C 0.115 3.885 29 H 0.252 0.748 30 H 0.109 0.891 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.364 0.636 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.399 0.601 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.031 0.969 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.342 -23.593 1.020 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.166 4.166 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.020 4.020 15 N -0.371 5.371 16 C 0.351 3.649 17 O -0.413 6.413 18 C -0.197 4.197 19 C -0.011 4.011 20 N -0.180 5.180 21 C 0.021 3.979 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.116 4.116 27 C -0.013 4.013 28 C -0.012 4.012 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.211 0.789 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.180 0.820 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.049 0.951 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.803 -23.075 1.109 25.942 hybrid contribution 0.851 0.439 0.117 0.965 sum 12.654 -22.636 1.226 25.962 Atomic orbital electron populations 1.69795 1.04901 1.24783 1.57334 1.24801 0.95749 0.97784 1.02238 0.85988 0.78625 0.83511 0.77286 1.20529 1.21691 1.21685 1.19100 0.90491 0.82336 1.43393 0.90451 1.44413 1.01988 0.99301 1.86830 1.21954 0.84446 0.91830 0.98695 1.23056 0.95535 0.98260 0.99791 1.22578 0.98025 0.91003 0.82120 1.86640 1.43103 1.76046 1.28873 1.22172 0.84867 0.95392 0.99520 1.45928 1.25850 1.31803 1.33540 1.17925 0.84063 0.80048 0.82866 1.90791 1.60801 1.62651 1.27040 1.20973 0.98340 1.00181 1.00201 1.23083 0.89672 0.96804 0.91511 1.67970 1.10764 1.09544 1.29740 1.19049 0.94993 0.92086 0.91807 1.20864 0.93854 0.96236 1.00655 1.21013 0.99847 0.95228 0.95087 1.20973 0.95679 1.00420 0.96797 1.21087 0.95635 0.94461 0.99243 1.18846 0.96429 0.98492 0.97794 1.21975 0.91705 0.91198 0.96469 1.21935 0.93705 0.87317 0.98261 0.93670 0.87380 0.96315 0.91002 0.90533 0.78948 0.90342 0.89948 0.76539 0.82030 0.84351 0.85008 0.85192 0.84788 0.82834 0.95103 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -15.06 3.39 -170.07 -0.58 -15.64 16 10 C 0.16 3.76 5.88 -2.53 -0.01 3.75 16 11 C -0.13 -2.38 6.26 -24.58 -0.15 -2.54 16 12 C 0.10 1.72 0.93 -88.79 -0.08 1.64 16 13 O -0.54 -8.68 13.10 -35.23 -0.46 -9.14 16 14 C 0.10 1.45 4.80 -4.04 -0.02 1.44 16 15 N -0.72 -8.56 5.08 -61.28 -0.31 -8.88 16 16 C 0.56 7.31 7.77 -12.37 -0.10 7.21 16 17 O -0.54 -8.58 16.38 5.30 0.09 -8.49 16 18 C -0.19 -2.13 5.89 -104.83 -0.62 -2.74 16 19 C 0.16 1.70 10.68 -17.10 -0.18 1.52 16 20 N -0.47 -5.44 10.30 -10.67 -0.11 -5.55 16 21 C 0.14 1.50 6.61 -84.78 -0.56 0.94 16 22 C -0.10 -0.81 9.97 -39.48 -0.39 -1.21 16 23 C -0.09 -0.57 9.94 -39.93 -0.40 -0.97 16 24 C -0.12 -0.72 9.96 -39.92 -0.40 -1.12 16 25 C -0.09 -0.61 9.77 -39.47 -0.39 -1.00 16 26 C -0.11 -1.10 5.74 -106.81 -0.61 -1.71 16 27 C 0.01 0.13 9.46 -38.43 -0.36 -0.23 16 28 C 0.11 2.24 5.76 -3.07 -0.02 2.22 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 34 H 0.36 4.25 8.44 45.56 0.38 4.63 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 37 H 0.40 3.93 5.50 -40.82 -0.22 3.70 16 38 H 0.16 1.29 6.37 -52.49 -0.33 0.95 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.15 1.40 7.70 -52.49 -0.40 1.00 16 44 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 45 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -34.57 372.98 -9.81 -44.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.04 Total: 6.41 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -4.55 Total: 0.47 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.44 Total: -56.15 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.37 Total: -17.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.57 -9.81 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484240716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.698 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds