Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48495 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47103 * 300.00185 * 3 2 1 6 6 H 1.48506 * 109.47247 * 59.99604 * 3 2 1 7 7 C 1.38816 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64817 * 359.96017 * 9 7 2 11 11 C 1.54908 * 104.83145 * 204.16616 * 10 9 7 12 12 C 1.55165 * 101.58083 * 322.98904 * 11 10 9 13 13 O 1.42901 * 110.86712 * 277.07069 * 12 11 10 14 14 C 1.53000 * 110.72135 * 153.86924 * 12 11 10 15 15 N 1.46499 * 109.47075 * 190.02092 * 14 12 11 16 16 C 1.34773 * 119.99941 * 179.97438 * 15 14 12 17 17 O 1.21569 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.47753 * 120.00011 * 180.02562 * 16 15 14 19 19 C 1.40608 * 120.27113 * 359.97438 * 18 16 15 20 20 N 1.30793 * 121.54103 * 180.02562 * 19 18 16 21 21 C 1.33824 * 121.72489 * 0.02562 * 20 19 18 22 22 C 1.40522 * 120.83079 * 180.27697 * 21 20 19 23 23 C 1.36131 * 119.81720 * 180.20779 * 22 21 20 24 24 C 1.39346 * 121.08751 * 359.48811 * 23 22 21 25 25 C 1.36142 * 120.83376 * 0.28651 * 24 23 22 26 26 C 1.40539 * 119.61685 * 359.97284 * 25 24 23 27 27 C 1.39012 * 120.27373 * 180.02562 * 18 16 15 28 28 C 1.47026 * 125.65222 * 179.97438 * 9 7 2 29 29 H 0.97003 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.36282 * 322.99847 * 10 9 7 31 31 H 1.08993 * 110.36805 * 85.32171 * 10 9 7 32 32 H 1.08995 * 111.00291 * 204.91815 * 11 10 9 33 33 H 1.08998 * 111.01141 * 81.06203 * 11 10 9 34 34 H 0.96709 * 113.99657 * 177.45539 * 13 12 11 35 35 H 1.09002 * 109.47056 * 70.02154 * 14 12 11 36 36 H 1.09002 * 109.47015 * 310.02073 * 14 12 11 37 37 H 0.96998 * 120.00000 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.22712 * 0.02562 * 19 18 16 39 39 H 1.07994 * 120.09118 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.45951 * 179.75416 * 23 22 21 41 41 H 1.08009 * 119.58613 * 180.26202 * 24 23 22 42 42 H 1.07997 * 120.18952 * 179.97438 * 25 24 23 43 43 H 1.08000 * 121.01223 * 0.02562 * 27 18 16 44 44 H 1.09003 * 109.88163 * 59.48529 * 28 9 7 45 45 H 1.08999 * 109.88014 * 298.32676 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4015 -3.9319 0.6138 12 6 0.7785 -4.7524 0.0290 13 8 0.4761 -5.2094 -1.2907 14 6 1.1234 -5.9307 0.9420 15 7 2.3790 -6.5411 0.4982 16 6 2.8822 -7.6030 1.1582 17 8 2.2939 -8.0546 2.1214 18 6 4.1489 -8.2183 0.7109 19 6 4.8338 -7.7009 -0.4027 20 7 5.9564 -8.2263 -0.8203 21 6 6.5093 -9.2814 -0.2104 22 6 7.7192 -9.8274 -0.6716 23 6 8.2611 -10.9036 -0.0381 24 6 7.6410 -11.4722 1.0726 25 6 6.4704 -10.9690 1.5521 26 6 5.8796 -9.8617 0.9196 27 6 4.6728 -9.3141 1.3871 28 6 1.9318 -3.7275 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5992 -1.7584 0.6161 31 1 -0.5275 -2.4875 -1.0175 32 1 -1.3589 -4.3326 0.2807 33 1 -0.3517 -3.8971 1.7020 34 1 1.1978 -5.6942 -1.7141 35 1 0.3242 -6.6706 0.8979 36 1 1.2340 -5.5761 1.9668 37 1 2.8486 -6.1805 -0.2701 38 1 4.4233 -6.8497 -0.9256 39 1 8.2159 -9.3967 -1.5284 40 1 9.1892 -11.3211 -0.3998 41 1 8.0945 -12.3232 1.5592 42 1 5.9985 -11.4181 2.4135 43 1 4.1671 -9.7326 2.2447 44 1 2.5588 -3.8506 0.8836 45 1 2.5277 -3.8647 -0.9018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484240716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = -20.793851 kcal Electronic energy + Delta-G solvation = -28613.400688 eV Core-core repulsion = 24595.586654 eV Total energy + Delta-G solvation = -4017.814033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07471 -40.96595 -39.85174 -37.93932 -36.83325 -35.50317 -34.53412 -33.99740 -32.10906 -31.25435 -31.06684 -29.65609 -27.58879 -26.06983 -25.14397 -24.70679 -23.12931 -22.56415 -21.76339 -21.35208 -19.73352 -18.96981 -18.86248 -18.37647 -17.68326 -16.98226 -16.75334 -16.62455 -16.49044 -15.84071 -15.62020 -15.57181 -15.33999 -15.29953 -14.93922 -14.79518 -14.50180 -14.42823 -14.13142 -13.88972 -13.68537 -13.29275 -12.93325 -12.80032 -12.79318 -12.75199 -12.44685 -12.37261 -12.07445 -11.99129 -11.83913 -11.65907 -11.63349 -11.33814 -10.92559 -10.75336 -10.57519 -10.32638 -9.86192 -9.32402 -8.90753 -7.78172 -5.22925 -0.85205 -0.45420 0.81319 1.46216 1.47001 1.47642 1.57915 1.90325 2.17235 2.48376 3.03390 3.10137 3.16008 3.31680 3.42005 3.50627 3.54331 3.64769 3.71397 3.77084 3.90656 3.92952 3.96353 4.20733 4.30734 4.41276 4.48236 4.60978 4.64513 4.69141 4.77382 4.80433 4.92573 4.94742 4.99730 5.03587 5.06839 5.20267 5.33184 5.39294 5.45200 5.46488 5.61875 5.79806 5.82677 6.28138 6.29868 6.72663 6.78831 6.98818 7.09276 7.76291 8.39719 9.24009 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002316 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.716362 B =12085.694443 C =13146.574495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.159 3.841 11 C -0.119 4.119 12 C 0.125 3.875 13 O -0.554 6.554 14 C 0.119 3.881 15 N -0.711 5.711 16 C 0.570 3.430 17 O -0.569 6.569 18 C -0.207 4.207 19 C 0.159 3.841 20 N -0.495 5.495 21 C 0.119 3.881 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.115 4.115 25 C -0.092 4.092 26 C -0.128 4.128 27 C 0.014 3.986 28 C 0.110 3.890 29 H 0.247 0.753 30 H 0.075 0.925 31 H -0.015 1.015 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.385 0.615 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.410 0.590 38 H 0.180 0.820 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.038 0.962 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -26.038 1.295 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.158 4.158 12 C 0.083 3.917 13 O -0.361 6.361 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.358 3.642 17 O -0.450 6.450 18 C -0.212 4.212 19 C -0.015 4.015 20 N -0.203 5.203 21 C -0.002 4.002 22 C -0.139 4.139 23 C -0.097 4.097 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.130 4.130 27 C -0.012 4.012 28 C -0.016 4.016 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.003 0.997 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.196 0.804 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.056 0.944 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.175 -25.556 1.355 29.256 hybrid contribution 0.260 1.054 0.000 1.085 sum 14.435 -24.503 1.355 28.471 Atomic orbital electron populations 1.70050 1.06249 1.24989 1.58556 1.25650 0.96640 1.01064 1.02747 0.84978 0.78118 0.79345 0.76683 1.19021 1.22061 1.21814 1.19484 0.91033 0.83637 1.42467 0.89933 1.44698 1.02577 1.00771 1.86813 1.21669 0.84216 0.94282 0.96471 1.22905 0.97340 0.95286 1.00297 1.22214 0.95522 0.91024 0.82942 1.86604 1.44442 1.76372 1.28671 1.21872 0.85966 0.94397 0.98310 1.45768 1.25224 1.31518 1.33769 1.18120 0.84243 0.79666 0.82170 1.90770 1.61901 1.63720 1.28581 1.20814 0.97970 1.01150 1.01276 1.23304 0.89532 0.97233 0.91431 1.67981 1.11305 1.10447 1.30535 1.19458 0.95978 0.92295 0.92442 1.21074 0.93686 0.97502 1.01650 1.21447 1.00351 0.93706 0.94209 1.21418 0.94893 1.00731 0.96234 1.21416 0.96182 0.93692 0.99781 1.19041 0.96431 0.99531 0.98028 1.22160 0.91903 0.90806 0.96345 1.22160 0.94871 0.85618 0.98930 0.94312 0.90683 0.99707 0.89486 0.89394 0.76550 0.89629 0.90570 0.75254 0.80351 0.83913 0.81880 0.81886 0.82667 0.82210 0.94398 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.85 10.09 21.65 0.22 -56.63 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.24 -13.19 10.27 84.04 0.86 -12.33 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.61 3.39 -691.98 -2.35 -33.96 16 10 C 0.16 7.91 5.88 86.85 0.51 8.42 16 11 C -0.12 -4.42 6.26 31.99 0.20 -4.22 16 12 C 0.12 3.95 0.93 -9.61 -0.01 3.94 16 13 O -0.55 -16.77 13.10 -148.98 -1.95 -18.72 16 14 C 0.12 3.12 4.80 86.38 0.41 3.54 16 15 N -0.71 -15.85 5.08 -466.06 -2.37 -18.22 16 16 C 0.57 14.26 7.77 86.76 0.67 14.93 16 17 O -0.57 -17.90 16.38 -3.93 -0.06 -17.96 16 18 C -0.21 -4.47 5.89 -20.00 -0.12 -4.59 16 19 C 0.16 3.22 10.68 85.43 0.91 4.13 16 20 N -0.50 -11.22 10.30 -187.67 -1.93 -13.16 16 21 C 0.12 2.43 6.61 40.27 0.27 2.69 16 22 C -0.12 -1.83 9.97 22.34 0.22 -1.61 16 23 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 24 C -0.12 -0.95 9.96 22.05 0.22 -0.73 16 25 C -0.09 -1.09 9.77 22.34 0.22 -0.88 16 26 C -0.13 -2.34 5.74 -21.28 -0.12 -2.46 16 27 C 0.01 0.28 9.46 23.01 0.22 0.50 16 28 C 0.11 4.18 5.76 86.72 0.50 4.68 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.08 4.25 5.87 -2.39 -0.01 4.23 16 31 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.09 3.05 7.96 -2.39 -0.02 3.03 16 34 H 0.39 8.08 8.44 -74.05 -0.62 7.46 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 2.16 8.03 -2.39 -0.02 2.14 16 37 H 0.41 7.34 5.50 -92.71 -0.51 6.83 16 38 H 0.18 2.67 6.37 -2.91 -0.02 2.65 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.16 2.82 7.70 -2.91 -0.02 2.80 16 44 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 45 H 0.04 1.31 8.07 -2.39 -0.02 1.29 16 Total: -1.00 -77.08 372.98 -0.86 -77.94 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.09 Total: 20.90 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.66 Total: 12.09 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.43 Total: -121.97 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -2.02 Total: -36.69 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.08 -0.86 -77.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484240716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.145 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds