Wall clock time and date at job start Sat Apr 11 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48503 * 109.47016 * 264.98349 * 3 2 1 5 5 H 1.48497 * 109.47010 * 24.98558 * 3 2 1 6 6 H 1.48504 * 109.46939 * 144.98385 * 3 2 1 7 7 C 1.38817 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 187.32309 * 7 2 1 9 9 N 1.36935 * 119.99549 * 7.32076 * 7 2 1 10 10 C 1.47021 * 125.65188 * 5.84432 * 9 7 2 11 11 C 1.54320 * 107.27594 * 181.02027 * 10 9 7 12 12 C 1.55160 * 102.94030 * 22.19672 * 11 10 9 13 13 O 1.42893 * 111.00781 * 82.60913 * 12 11 10 14 14 C 1.52999 * 111.00541 * 206.42649 * 12 11 10 15 15 N 1.46501 * 109.47517 * 179.97438 * 14 12 11 16 16 C 1.34776 * 120.00539 * 179.97438 * 15 14 12 17 17 O 1.21566 * 119.99861 * 0.02562 * 16 15 14 18 18 C 1.47752 * 119.99954 * 179.97438 * 16 15 14 19 19 C 1.40589 * 120.27181 * 359.72388 * 18 16 15 20 20 N 1.30801 * 121.54125 * 179.70819 * 19 18 16 21 21 C 1.33821 * 121.71539 * 0.55847 * 20 19 18 22 22 C 1.40521 * 120.81331 * 179.70064 * 21 20 19 23 23 C 1.36138 * 119.81672 * 180.02562 * 22 21 20 24 24 C 1.39338 * 121.08241 * 0.02562 * 23 22 21 25 25 C 1.36138 * 120.84134 * 359.97438 * 24 23 22 26 26 C 1.40545 * 119.61732 * 359.97438 * 25 24 23 27 27 C 1.39014 * 120.26407 * 180.02562 * 18 16 15 28 28 C 1.47433 * 125.64649 * 185.53800 * 9 7 2 29 29 H 0.97005 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.88245 * 300.44264 * 10 9 7 31 31 H 1.09005 * 109.88181 * 61.60513 * 10 9 7 32 32 H 1.08994 * 110.72470 * 140.55613 * 11 10 9 33 33 H 1.08998 * 110.72586 * 263.83449 * 11 10 9 34 34 H 0.96697 * 114.00372 * 180.02562 * 13 12 11 35 35 H 1.09006 * 109.46959 * 299.99707 * 14 12 11 36 36 H 1.09003 * 109.47233 * 59.99461 * 14 12 11 37 37 H 0.97008 * 119.99340 * 359.97438 * 15 14 12 38 38 H 1.08003 * 119.23333 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.09150 * 0.06613 * 22 21 20 40 40 H 1.07994 * 119.45393 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.57552 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.19372 * 180.02562 * 25 24 23 43 43 H 1.08004 * 121.01929 * 0.02562 * 27 18 16 44 44 H 1.09000 * 110.36086 * 274.74386 * 28 9 7 45 45 H 1.08996 * 110.36312 * 37.07047 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5914 6 1 3.4907 1.4730 0.8034 7 6 2.0102 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3339 -2.3833 -0.1501 10 6 -0.1009 -2.5180 -0.4409 11 6 -0.4176 -4.0274 -0.4962 12 6 0.7390 -4.6553 0.3257 13 8 0.4635 -4.5951 1.7265 14 6 1.0068 -6.0954 -0.1161 15 7 2.1027 -6.6546 0.6792 16 6 2.5145 -7.9197 0.4639 17 8 1.9769 -8.5968 -0.3907 18 6 3.6202 -8.4833 1.2658 19 6 4.2505 -7.7030 2.2509 20 7 5.2277 -8.1786 2.9787 21 6 5.6838 -9.4261 2.8157 22 6 6.7390 -9.9156 3.6040 23 6 7.1873 -11.1879 3.4206 24 6 6.6169 -12.0200 2.4595 25 6 5.5930 -11.5823 1.6763 26 6 5.1040 -10.2747 1.8390 27 6 4.0497 -9.7873 1.0480 28 6 1.9252 -3.7304 -0.0536 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6852 -2.0453 0.3485 31 1 -0.3295 -2.0560 -1.4014 32 1 -1.3801 -4.2369 -0.0297 33 1 -0.3997 -4.3879 -1.5247 34 1 1.1585 -4.9755 2.2808 35 1 0.1079 -6.6940 0.0318 36 1 1.2813 -6.1068 -1.1710 37 1 2.5320 -6.1141 1.3609 38 1 3.9174 -6.6886 2.4134 39 1 7.1926 -9.2845 4.3538 40 1 7.9988 -11.5580 4.0295 41 1 6.9919 -13.0251 2.3343 42 1 5.1584 -12.2363 0.9349 43 1 3.5869 -10.4072 0.2943 44 1 2.3497 -4.0278 -1.0125 45 1 2.6885 -3.7547 0.7241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484240717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:11 Heat of formation + Delta-G solvation = 4.647679 kcal Electronic energy + Delta-G solvation = -28575.937590 eV Core-core repulsion = 24559.226784 eV Total energy + Delta-G solvation = -4016.710806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34271 -39.89489 -38.48957 -37.28237 -35.22412 -34.26052 -33.82789 -32.18910 -31.26301 -30.47931 -29.58601 -28.26203 -25.98607 -24.82363 -24.46653 -23.35504 -22.50743 -21.32723 -20.20977 -19.98537 -18.83790 -18.25325 -17.64281 -16.90777 -16.51714 -16.11261 -15.58971 -15.43967 -14.99648 -14.74417 -14.67057 -14.58565 -14.21652 -14.14991 -13.84074 -13.78418 -13.41107 -13.36878 -12.92285 -12.40633 -12.22597 -12.15303 -11.95021 -11.91833 -11.70643 -11.07394 -10.91994 -10.86183 -10.76841 -10.58463 -10.33026 -10.11784 -10.02629 -9.79398 -9.73774 -9.47917 -9.33326 -9.14261 -8.71483 -8.61652 -6.82938 -5.69856 -3.06782 -0.17313 0.20591 1.46168 2.19223 2.87324 2.95948 3.40190 3.44851 3.46899 3.71257 3.77622 4.13892 4.27365 4.35939 4.37511 4.46304 4.47011 4.56697 4.67905 4.76167 4.86642 4.98553 5.09657 5.32482 5.36327 5.44112 5.45169 5.49161 5.59978 5.63156 5.77682 5.85927 5.91013 5.95891 6.03078 6.14797 6.17750 6.34334 6.35559 6.41782 6.52745 6.57407 7.21610 7.44383 7.44720 7.65311 7.84948 7.91212 7.98123 8.26851 9.19567 9.80632 10.45652 11.39170 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.002261 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.879819 B =12381.446495 C =13515.009660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.174 3.826 11 C -0.126 4.126 12 C 0.101 3.899 13 O -0.533 6.533 14 C 0.103 3.897 15 N -0.719 5.719 16 C 0.566 3.434 17 O -0.535 6.535 18 C -0.192 4.192 19 C 0.163 3.837 20 N -0.473 5.473 21 C 0.142 3.858 22 C -0.098 4.098 23 C -0.092 4.092 24 C -0.121 4.121 25 C -0.086 4.086 26 C -0.114 4.114 27 C 0.013 3.987 28 C 0.116 3.884 29 H 0.253 0.747 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.361 0.639 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.398 0.602 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.027 0.973 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 -24.552 5.190 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.165 4.165 12 C 0.059 3.941 13 O -0.337 6.337 14 C -0.021 4.021 15 N -0.371 5.371 16 C 0.352 3.648 17 O -0.413 6.413 18 C -0.197 4.197 19 C -0.011 4.011 20 N -0.180 5.180 21 C 0.021 3.979 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.116 4.116 27 C -0.013 4.013 28 C -0.011 4.011 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.207 0.793 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.234 0.766 38 H 0.180 0.820 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.045 0.955 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.129 -24.017 5.048 26.550 hybrid contribution 0.794 0.445 -0.153 0.923 sum 10.923 -23.572 4.895 26.437 Atomic orbital electron populations 1.69951 1.04925 1.25100 1.56372 1.24820 0.95668 0.97739 1.02091 0.86142 0.78569 0.83412 0.77636 1.21573 1.21680 1.20727 1.19001 0.90788 0.82564 1.43626 0.90550 1.44338 1.05070 0.99453 1.83381 1.21226 0.85499 0.88027 1.00266 1.22878 0.96609 0.99484 0.97535 1.22787 0.98453 0.90695 0.82201 1.86686 1.47013 1.84256 1.15718 1.22122 0.89307 0.94514 0.96109 1.45884 1.37394 1.13674 1.40139 1.17912 0.82403 0.81636 0.82859 1.90790 1.57042 1.59642 1.33792 1.20963 1.00749 0.96600 1.01414 1.23084 0.89847 0.99238 0.88917 1.67979 1.12078 1.12918 1.25006 1.19049 0.95328 0.89553 0.93997 1.20871 0.95451 0.96034 0.99251 1.21015 0.99277 0.93480 0.97397 1.20970 0.96588 1.00358 0.95942 1.21086 0.96365 0.93869 0.99114 1.18848 0.98175 0.96092 0.98451 1.21977 0.91116 0.93720 0.94522 1.22212 0.93594 0.87397 0.97896 0.93698 0.91405 0.95196 0.90831 0.90955 0.79320 0.90441 0.90029 0.76633 0.82009 0.84340 0.85003 0.85193 0.84790 0.82836 0.95506 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.46 55.49 0.58 -26.43 16 2 C -0.01 -0.18 5.45 -17.43 -0.10 -0.28 16 3 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.62 16 9 N -0.60 -15.01 3.39 -169.93 -0.58 -15.58 16 10 C 0.17 4.22 5.44 -3.07 -0.02 4.21 16 11 C -0.13 -2.32 6.15 -24.90 -0.15 -2.47 16 12 C 0.10 1.66 0.97 -88.35 -0.09 1.58 16 13 O -0.53 -8.96 13.21 -35.23 -0.47 -9.42 16 14 C 0.10 1.40 4.88 -4.04 -0.02 1.38 16 15 N -0.72 -8.30 5.15 -61.28 -0.32 -8.61 16 16 C 0.57 7.12 7.77 -12.37 -0.10 7.02 16 17 O -0.53 -8.37 16.38 5.31 0.09 -8.28 16 18 C -0.19 -2.08 5.88 -104.83 -0.62 -2.69 16 19 C 0.16 1.66 10.68 -17.10 -0.18 1.47 16 20 N -0.47 -5.35 10.30 -10.67 -0.11 -5.46 16 21 C 0.14 1.48 6.61 -84.79 -0.56 0.92 16 22 C -0.10 -0.80 9.97 -39.48 -0.39 -1.19 16 23 C -0.09 -0.56 9.94 -39.93 -0.40 -0.96 16 24 C -0.12 -0.70 9.96 -39.93 -0.40 -1.10 16 25 C -0.09 -0.60 9.77 -39.47 -0.39 -0.99 16 26 C -0.11 -1.08 5.74 -106.81 -0.61 -1.69 16 27 C 0.01 0.13 9.46 -38.43 -0.36 -0.23 16 28 C 0.12 2.25 6.23 -2.40 -0.01 2.24 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.07 1.87 6.88 -51.93 -0.36 1.52 16 31 H 0.03 0.78 7.98 -51.93 -0.41 0.37 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.36 4.47 7.69 45.56 0.35 4.82 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 37 H 0.40 3.77 5.31 -40.82 -0.22 3.55 16 38 H 0.16 1.24 6.37 -52.48 -0.33 0.91 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.15 1.36 7.70 -52.48 -0.40 0.96 16 44 H 0.03 0.52 7.99 -51.93 -0.41 0.11 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -35.25 373.80 -9.87 -45.13 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.13 Total: 5.32 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -4.55 Total: 0.65 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.42 Total: -56.09 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.38 Total: -17.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.25 -9.87 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484240717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.774 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds