Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47270 * 300.00138 * 3 2 1 6 6 H 1.48502 * 109.46861 * 59.99999 * 3 2 1 7 7 C 1.38814 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.47588 * 134.48912 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11708 * 155.35941 * 10 9 7 12 12 O 1.42899 * 113.74313 * 269.15726 * 11 10 9 13 13 C 1.52999 * 113.74248 * 137.94959 * 11 10 9 14 14 N 1.46501 * 109.47245 * 185.00215 * 13 11 10 15 15 C 1.34773 * 120.00045 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.36108 * 120.12713 * 264.98042 * 18 17 15 20 20 C 1.39318 * 121.06886 * 179.97438 * 19 18 17 21 21 C 1.36179 * 120.86533 * 0.07008 * 20 19 18 22 22 C 1.40384 * 119.61244 * 359.90676 * 21 20 19 23 23 C 1.40777 * 121.38008 * 179.78645 * 22 21 20 24 24 C 1.36573 * 118.15205 * 179.80616 * 23 22 21 25 25 C 1.39341 * 119.93796 * 0.49645 * 24 23 22 26 26 N 1.31078 * 121.75112 * 359.72301 * 25 24 23 27 27 C 1.33686 * 121.32444 * 0.02562 * 26 25 24 28 28 C 1.47581 * 134.49867 * 0.02562 * 9 7 2 29 29 H 0.97003 * 120.00451 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76698 * 41.06031 * 10 9 7 31 31 H 1.09003 * 113.87037 * 269.67045 * 10 9 7 32 32 H 0.96703 * 114.00067 * 178.07535 * 12 11 10 33 33 H 1.09002 * 109.46747 * 65.00328 * 13 11 10 34 34 H 1.09003 * 109.47368 * 305.00160 * 13 11 10 35 35 H 0.97001 * 119.99714 * 359.97438 * 14 13 11 36 36 H 1.09005 * 109.46915 * 59.99333 * 17 15 14 37 37 H 1.09003 * 109.46924 * 299.99650 * 17 15 14 38 38 H 1.08000 * 119.46913 * 0.02562 * 19 18 17 39 39 H 1.07992 * 119.56580 * 180.02562 * 20 19 18 40 40 H 1.07992 * 120.19104 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.92806 * 0.28428 * 23 22 21 42 42 H 1.08001 * 120.03101 * 180.23980 * 24 23 22 43 43 H 1.08001 * 119.11998 * 179.73496 * 25 24 23 44 44 H 1.08999 * 113.77179 * 90.33228 * 28 9 7 45 45 H 1.09003 * 113.76448 * 318.94195 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 1.7202 -3.8101 -0.0019 11 6 0.3466 -4.0833 0.6373 12 8 0.3617 -4.0589 2.0660 13 6 -0.3635 -5.3136 0.0691 14 7 -1.7031 -5.4174 0.6531 15 6 -2.5164 -6.4318 0.2979 16 8 -2.1394 -7.2584 -0.5055 17 6 -3.8942 -6.5388 0.8990 18 6 -4.5936 -7.7506 0.3394 19 6 -5.4255 -7.6258 -0.7307 20 6 -6.0817 -8.7330 -1.2642 21 6 -5.9095 -9.9727 -0.7277 22 6 -5.0583 -10.1387 0.3763 23 6 -4.8567 -11.4024 0.9629 24 6 -4.0113 -11.4890 2.0321 25 6 -3.3850 -10.3430 2.5180 26 7 -3.5786 -9.1671 1.9722 27 6 -4.3895 -9.0140 0.9205 28 6 -0.1033 -2.7574 -0.0029 29 1 -0.4851 0.8400 -0.0004 30 1 2.5619 -4.0326 0.6539 31 1 1.8334 -4.2363 -0.9988 32 1 -0.5049 -4.2009 2.4710 33 1 0.2093 -6.2085 0.3127 34 1 -0.4456 -5.2182 -1.0136 35 1 -2.0045 -4.7565 1.2959 36 1 -4.4673 -5.6441 0.6556 37 1 -3.8117 -6.6342 1.9817 38 1 -5.5788 -6.6530 -1.1739 39 1 -6.7360 -8.6062 -2.1139 40 1 -6.4239 -10.8233 -1.1497 41 1 -5.3507 -12.2804 0.5736 42 1 -3.8315 -12.4441 2.5030 43 1 -2.7224 -10.4260 3.3668 44 1 -0.5264 -2.8726 -1.0008 45 1 -0.7173 -2.1394 0.6522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484286873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 32.622819 kcal Electronic energy + Delta-G solvation = -28582.306838 eV Core-core repulsion = 24566.809125 eV Total energy + Delta-G solvation = -4015.497713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15711 -39.70894 -38.55852 -37.30318 -34.86063 -34.29343 -33.88491 -31.99337 -31.58656 -30.76174 -28.97411 -27.53565 -25.66126 -24.94941 -24.38468 -23.81153 -22.16004 -21.40105 -20.25882 -19.28966 -18.50940 -17.61311 -17.16850 -16.99704 -16.67842 -16.04806 -15.51482 -15.33401 -14.90969 -14.73004 -14.44147 -14.41234 -14.16466 -13.92881 -13.73076 -13.38259 -13.27742 -13.13985 -13.11184 -12.65821 -12.23832 -12.10785 -11.93904 -11.85852 -11.66360 -11.43057 -11.05408 -10.92639 -10.73345 -10.71555 -10.38096 -9.96201 -9.70271 -9.65482 -9.47925 -9.17450 -8.97688 -8.85051 -8.81290 -8.38328 -6.88632 -5.76551 -3.07989 0.15741 0.62229 1.75119 2.70249 2.80739 3.31679 3.40166 3.45329 3.47872 3.91715 4.09460 4.24981 4.44597 4.47387 4.53907 4.56106 4.65196 4.79023 4.91319 4.92111 5.07642 5.10365 5.15566 5.21818 5.26229 5.32830 5.39211 5.56891 5.60367 5.73981 5.79467 5.80757 5.84473 6.10165 6.16056 6.21174 6.28961 6.33396 6.46358 6.57350 6.61835 6.63949 7.03191 7.18418 7.51615 7.59134 7.72661 7.97113 8.16551 8.36820 9.04713 9.70852 10.57387 11.40955 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.002137 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.766948 B =13101.259118 C =13720.527131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.135 3.865 11 C 0.064 3.936 12 O -0.526 6.526 13 C 0.105 3.895 14 N -0.725 5.725 15 C 0.523 3.477 16 O -0.538 6.538 17 C -0.099 4.099 18 C -0.035 4.035 19 C -0.093 4.093 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.059 4.059 24 C -0.178 4.178 25 C 0.129 3.871 26 N -0.466 5.466 27 C 0.142 3.858 28 C 0.145 3.855 29 H 0.252 0.748 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.362 0.638 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.034 0.966 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -22.702 3.004 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.009 3.991 11 C 0.022 3.978 12 O -0.330 6.330 13 C -0.020 4.020 14 N -0.378 5.378 15 C 0.309 3.691 16 O -0.414 6.414 17 C -0.139 4.139 18 C -0.036 4.036 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.104 4.104 23 C -0.085 4.085 24 C -0.198 4.198 25 C -0.044 4.044 26 N -0.174 5.174 27 C 0.021 3.979 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.208 0.792 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.051 0.949 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.158 -21.994 2.581 26.284 hybrid contribution -0.670 0.317 -0.118 0.750 sum -14.828 -21.676 2.463 26.378 Atomic orbital electron populations 1.69810 1.05022 1.25162 1.57091 1.24772 0.95726 0.97534 1.02558 0.86015 0.78761 0.83601 0.77205 1.20437 1.21788 1.21703 1.19048 0.90321 0.81732 1.43306 0.90075 1.45675 1.02034 0.99179 1.85965 1.22554 0.93478 0.86599 0.96504 1.23728 0.99088 0.93384 0.81637 1.86613 1.33611 1.95150 1.17610 1.22001 0.82001 0.99120 0.98845 1.45902 1.16236 1.28875 1.46803 1.20300 0.86332 0.80779 0.81649 1.90699 1.75970 1.40554 1.34191 1.20574 0.93511 0.96806 1.02993 1.18945 0.96605 0.92368 0.95667 1.20819 0.96105 0.99609 0.94780 1.20884 0.99527 0.92478 0.99854 1.20948 0.97875 0.97951 0.95328 1.18800 0.99586 0.94182 0.97843 1.21443 0.96105 0.96386 0.94592 1.21877 0.99039 1.00423 0.98430 1.22966 0.96049 0.87616 0.97723 1.67983 1.14324 1.26182 1.08907 1.18608 0.93767 0.92771 0.92794 1.22892 0.88883 0.89197 0.97143 0.93767 0.92693 0.93280 0.79185 0.91354 0.90491 0.76719 0.87823 0.86960 0.85146 0.85379 0.85370 0.84562 0.84648 0.82479 0.94884 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 11.38 55.49 0.63 -26.76 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.76 3.70 -177.77 -0.66 -16.42 16 10 C 0.14 2.86 8.34 -2.97 -0.02 2.83 16 11 C 0.06 1.21 1.52 -89.69 -0.14 1.07 16 12 O -0.53 -9.78 13.51 -35.23 -0.48 -10.25 16 13 C 0.11 1.68 5.28 -4.04 -0.02 1.66 16 14 N -0.73 -9.80 5.34 -60.29 -0.32 -10.12 16 15 C 0.52 7.50 7.82 -10.99 -0.09 7.42 16 16 O -0.54 -9.85 16.03 5.56 0.09 -9.76 16 17 C -0.10 -1.08 5.56 -29.03 -0.16 -1.24 16 18 C -0.03 -0.42 4.38 -104.52 -0.46 -0.88 16 19 C -0.09 -0.96 9.56 -39.95 -0.38 -1.34 16 20 C -0.11 -0.97 9.96 -39.92 -0.40 -1.36 16 21 C -0.10 -0.91 9.78 -39.51 -0.39 -1.29 16 22 C -0.10 -1.09 5.74 -106.80 -0.61 -1.71 16 23 C -0.06 -0.49 9.90 -39.22 -0.39 -0.88 16 24 C -0.18 -1.38 10.03 -39.77 -0.40 -1.78 16 25 C 0.13 1.25 11.15 -17.46 -0.19 1.05 16 26 N -0.47 -5.89 9.51 -10.98 -0.10 -6.00 16 27 C 0.14 1.80 6.58 -84.86 -0.56 1.25 16 28 C 0.14 3.33 6.92 -2.97 -0.02 3.31 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.36 5.04 7.61 45.56 0.35 5.39 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.40 4.46 7.31 -40.82 -0.30 4.16 16 36 H 0.10 0.85 8.04 -51.93 -0.42 0.44 16 37 H 0.11 1.13 7.72 -51.93 -0.40 0.73 16 38 H 0.13 1.09 8.04 -52.49 -0.42 0.67 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 45 H 0.08 1.97 7.15 -51.93 -0.37 1.60 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -37.86 381.80 -9.92 -47.78 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.32 Total: 7.01 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -4.48 Total: 1.36 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.45 Total: -59.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.39 Total: -20.02 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.86 -9.92 -47.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484286873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.401 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds