Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47270 * 300.00138 * 3 2 1 6 6 H 1.48502 * 109.46861 * 59.99999 * 3 2 1 7 7 C 1.38814 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.47588 * 134.48912 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11708 * 155.35941 * 10 9 7 12 12 O 1.42899 * 113.74313 * 269.15726 * 11 10 9 13 13 C 1.52999 * 113.74248 * 137.94959 * 11 10 9 14 14 N 1.46501 * 109.47245 * 185.00215 * 13 11 10 15 15 C 1.34773 * 120.00045 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.36108 * 120.12713 * 264.98042 * 18 17 15 20 20 C 1.39318 * 121.06886 * 179.97438 * 19 18 17 21 21 C 1.36179 * 120.86533 * 0.07008 * 20 19 18 22 22 C 1.40384 * 119.61244 * 359.90676 * 21 20 19 23 23 C 1.40777 * 121.38008 * 179.78645 * 22 21 20 24 24 C 1.36573 * 118.15205 * 179.80616 * 23 22 21 25 25 C 1.39341 * 119.93796 * 0.49645 * 24 23 22 26 26 N 1.31078 * 121.75112 * 359.72301 * 25 24 23 27 27 C 1.33686 * 121.32444 * 0.02562 * 26 25 24 28 28 C 1.47581 * 134.49867 * 0.02562 * 9 7 2 29 29 H 0.97003 * 120.00451 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76698 * 41.06031 * 10 9 7 31 31 H 1.09003 * 113.87037 * 269.67045 * 10 9 7 32 32 H 0.96703 * 114.00067 * 178.07535 * 12 11 10 33 33 H 1.09002 * 109.46747 * 65.00328 * 13 11 10 34 34 H 1.09003 * 109.47368 * 305.00160 * 13 11 10 35 35 H 0.97001 * 119.99714 * 359.97438 * 14 13 11 36 36 H 1.09005 * 109.46915 * 59.99333 * 17 15 14 37 37 H 1.09003 * 109.46924 * 299.99650 * 17 15 14 38 38 H 1.08000 * 119.46913 * 0.02562 * 19 18 17 39 39 H 1.07992 * 119.56580 * 180.02562 * 20 19 18 40 40 H 1.07992 * 120.19104 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.92806 * 0.28428 * 23 22 21 42 42 H 1.08001 * 120.03101 * 180.23980 * 24 23 22 43 43 H 1.08001 * 119.11998 * 179.73496 * 25 24 23 44 44 H 1.08999 * 113.77179 * 90.33228 * 28 9 7 45 45 H 1.09003 * 113.76448 * 318.94195 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 1.7202 -3.8101 -0.0019 11 6 0.3466 -4.0833 0.6373 12 8 0.3617 -4.0589 2.0660 13 6 -0.3635 -5.3136 0.0691 14 7 -1.7031 -5.4174 0.6531 15 6 -2.5164 -6.4318 0.2979 16 8 -2.1394 -7.2584 -0.5055 17 6 -3.8942 -6.5388 0.8990 18 6 -4.5936 -7.7506 0.3394 19 6 -5.4255 -7.6258 -0.7307 20 6 -6.0817 -8.7330 -1.2642 21 6 -5.9095 -9.9727 -0.7277 22 6 -5.0583 -10.1387 0.3763 23 6 -4.8567 -11.4024 0.9629 24 6 -4.0113 -11.4890 2.0321 25 6 -3.3850 -10.3430 2.5180 26 7 -3.5786 -9.1671 1.9722 27 6 -4.3895 -9.0140 0.9205 28 6 -0.1033 -2.7574 -0.0029 29 1 -0.4851 0.8400 -0.0004 30 1 2.5619 -4.0326 0.6539 31 1 1.8334 -4.2363 -0.9988 32 1 -0.5049 -4.2009 2.4710 33 1 0.2093 -6.2085 0.3127 34 1 -0.4456 -5.2182 -1.0136 35 1 -2.0045 -4.7565 1.2959 36 1 -4.4673 -5.6441 0.6556 37 1 -3.8117 -6.6342 1.9817 38 1 -5.5788 -6.6530 -1.1739 39 1 -6.7360 -8.6062 -2.1139 40 1 -6.4239 -10.8233 -1.1497 41 1 -5.3507 -12.2804 0.5736 42 1 -3.8315 -12.4441 2.5030 43 1 -2.7224 -10.4260 3.3668 44 1 -0.5264 -2.8726 -1.0008 45 1 -0.7173 -2.1394 0.6522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484286873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 4.463068 kcal Electronic energy + Delta-G solvation = -28583.527936 eV Core-core repulsion = 24566.809125 eV Total energy + Delta-G solvation = -4016.718811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88123 -41.03521 -39.99982 -38.01293 -36.49530 -35.24128 -35.00992 -34.01869 -32.37099 -31.42413 -30.42167 -28.83488 -27.19952 -26.70787 -25.07661 -24.48723 -23.84021 -22.40797 -21.34065 -20.92068 -19.15691 -19.01485 -18.46889 -17.88160 -17.76096 -17.32187 -17.10803 -16.44252 -16.36194 -15.81772 -15.57423 -15.49512 -15.20070 -15.09118 -14.97934 -14.62290 -14.57108 -14.28704 -13.92997 -13.86943 -13.79229 -13.48069 -13.00737 -12.86972 -12.81523 -12.64048 -12.56643 -12.51554 -12.18297 -12.11238 -11.77882 -11.46271 -11.40653 -10.99113 -10.86939 -10.72499 -10.38070 -10.12494 -9.66616 -9.09160 -8.94701 -7.92098 -5.24946 -0.50720 -0.06610 1.05224 1.44932 1.46163 1.56398 1.68745 2.00050 2.24044 2.45677 3.04873 3.18177 3.27569 3.34413 3.42224 3.56701 3.59070 3.84131 3.89605 3.91731 4.02037 4.10016 4.16537 4.31056 4.35630 4.42126 4.50496 4.59478 4.66424 4.67182 4.74893 4.77242 4.91374 4.94325 5.11255 5.15906 5.17353 5.19029 5.30697 5.35839 5.48783 5.49242 5.50564 5.66326 5.91210 5.99008 6.49812 6.82579 6.90846 7.02397 7.25094 7.57890 8.51525 9.24846 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.002137 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.766948 B =13101.259118 C =13720.527131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.636 5.636 10 C 0.128 3.872 11 C 0.099 3.901 12 O -0.540 6.540 13 C 0.121 3.879 14 N -0.718 5.718 15 C 0.524 3.476 16 O -0.579 6.579 17 C -0.089 4.089 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.061 4.061 24 C -0.178 4.178 25 C 0.116 3.884 26 N -0.504 5.504 27 C 0.112 3.888 28 C 0.145 3.855 29 H 0.249 0.751 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.411 0.589 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.026 0.974 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 -24.415 3.138 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.003 3.997 11 C 0.056 3.944 12 O -0.347 6.347 13 C -0.004 4.004 14 N -0.371 5.371 15 C 0.313 3.687 16 O -0.458 6.458 17 C -0.129 4.129 18 C -0.069 4.069 19 C -0.119 4.119 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.197 4.197 25 C -0.056 4.056 26 N -0.212 5.212 27 C -0.009 4.009 28 C 0.020 3.980 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.187 0.813 42 H 0.187 0.813 43 H 0.195 0.805 44 H 0.044 0.956 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.941 -23.726 2.743 28.172 hybrid contribution -0.436 0.732 -0.130 0.862 sum -15.377 -22.994 2.613 27.785 Atomic orbital electron populations 1.69981 1.06290 1.25569 1.58215 1.25620 0.96712 1.00790 1.02903 0.84980 0.78116 0.79250 0.76785 1.19152 1.21758 1.21743 1.19412 0.90796 0.83235 1.42715 0.90056 1.46060 1.03576 1.00356 1.86236 1.22790 0.94850 0.84218 0.97859 1.23120 0.97270 0.92338 0.81628 1.86563 1.35645 1.95128 1.17326 1.21648 0.83048 0.97421 0.98278 1.45808 1.15304 1.29232 1.46798 1.20886 0.87281 0.79772 0.80804 1.90673 1.76945 1.42048 1.36162 1.20555 0.91441 0.97949 1.02941 1.19166 0.98075 0.92633 0.97006 1.21132 0.95664 1.00878 0.94239 1.21240 0.99779 0.92173 1.00623 1.21354 0.97040 0.99041 0.94449 1.19187 1.00132 0.94781 0.98779 1.21885 0.95894 0.96545 0.94331 1.22234 0.98142 1.01145 0.98187 1.23500 0.96237 0.87743 0.98109 1.67948 1.15582 1.27804 1.09880 1.18936 0.94687 0.93794 0.93495 1.22824 0.87425 0.91137 0.96636 0.94196 0.92489 0.91190 0.76757 0.91061 0.91164 0.75273 0.85265 0.86389 0.83891 0.82727 0.82335 0.81305 0.81280 0.80548 0.95592 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.49 11.38 21.65 0.25 -57.24 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.23 -13.50 10.70 84.04 0.90 -12.60 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.64 -33.57 3.70 -720.17 -2.66 -36.23 16 10 C 0.13 5.37 8.34 86.48 0.72 6.09 16 11 C 0.10 3.67 1.52 -10.13 -0.02 3.65 16 12 O -0.54 -19.58 13.51 -148.98 -2.01 -21.59 16 13 C 0.12 3.80 5.28 86.38 0.46 4.25 16 14 N -0.72 -18.93 5.34 -463.06 -2.47 -21.40 16 15 C 0.52 14.92 7.82 87.66 0.69 15.61 16 16 O -0.58 -21.41 16.03 -3.02 -0.05 -21.45 16 17 C -0.09 -1.93 5.56 29.10 0.16 -1.77 16 18 C -0.07 -1.62 4.38 -19.80 -0.09 -1.71 16 19 C -0.10 -1.98 9.56 22.03 0.21 -1.77 16 20 C -0.12 -1.95 9.96 22.05 0.22 -1.73 16 21 C -0.10 -1.60 9.78 22.31 0.22 -1.38 16 22 C -0.13 -2.59 5.74 -21.28 -0.12 -2.71 16 23 C -0.06 -0.88 9.90 22.50 0.22 -0.66 16 24 C -0.18 -2.41 10.03 22.15 0.22 -2.19 16 25 C 0.12 2.16 11.15 85.07 0.95 3.11 16 26 N -0.50 -12.78 9.51 -188.64 -1.79 -14.58 16 27 C 0.11 2.84 6.58 40.28 0.27 3.11 16 28 C 0.15 6.80 6.92 86.48 0.60 7.40 16 29 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.66 8.10 -2.39 -0.02 2.64 16 32 H 0.38 10.19 7.61 -74.06 -0.56 9.62 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.33 8.04 -2.39 -0.02 2.32 16 35 H 0.41 8.81 7.31 -92.71 -0.68 8.13 16 36 H 0.13 2.00 8.04 -2.38 -0.02 1.98 16 37 H 0.12 2.37 7.72 -2.39 -0.02 2.35 16 38 H 0.14 2.27 8.04 -2.91 -0.02 2.25 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 45 H 0.05 2.67 7.15 -2.39 -0.02 2.65 16 Total: -1.00 -83.81 381.80 -0.85 -84.66 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.21 Total: 26.02 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.07 Total: 13.27 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -6.68 Total: -129.45 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -2.06 Total: -43.04 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -83.81 -0.85 -84.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484286873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.126 kcal (2) G-P(sol) polarization free energy of solvation -83.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds