Wall clock time and date at job start Sat Apr 11 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99614 * 2 1 4 4 H 1.48496 * 109.47094 * 240.00054 * 3 2 1 5 5 H 1.48497 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 120.00227 * 3 2 1 7 7 C 1.38810 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.49134 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11516 * 155.36558 * 10 9 7 12 12 O 1.42904 * 113.73988 * 269.15722 * 11 10 9 13 13 C 1.52999 * 113.74391 * 137.95496 * 11 10 9 14 14 N 1.46505 * 109.47192 * 184.99912 * 13 11 10 15 15 C 1.34777 * 119.99724 * 180.02562 * 14 13 11 16 16 O 1.21713 * 120.00188 * 359.97438 * 15 14 13 17 17 C 1.46585 * 119.99387 * 179.72471 * 15 14 13 18 18 C 1.38058 * 126.00109 * 180.29686 * 17 15 14 19 19 C 1.39362 * 107.43619 * 180.02562 * 18 17 15 20 20 C 1.37820 * 107.65850 * 0.02562 * 19 18 17 21 21 C 1.47811 * 125.82234 * 180.02562 * 20 19 18 22 22 C 1.39592 * 120.14287 * 179.69989 * 21 20 19 23 23 C 1.37954 * 119.85100 * 179.77248 * 22 21 20 24 24 C 1.38368 * 120.14448 * 0.50316 * 23 22 21 25 25 C 1.38362 * 120.29577 * 359.75144 * 24 23 22 26 26 C 1.37960 * 120.14718 * 359.97438 * 25 24 23 27 27 N 1.36411 * 108.34957 * 359.73637 * 20 19 18 28 28 H 0.96991 * 125.71741 * 180.30343 * 27 20 19 29 29 C 1.47580 * 134.49100 * 0.02562 * 9 7 2 30 30 H 0.96999 * 120.00316 * 359.97438 * 1 2 3 31 31 H 1.09007 * 113.76797 * 41.06650 * 10 9 7 32 32 H 1.08994 * 113.87657 * 269.67751 * 10 9 7 33 33 H 0.96707 * 113.99874 * 178.07236 * 12 11 10 34 34 H 1.09003 * 109.46690 * 65.00076 * 13 11 10 35 35 H 1.08993 * 109.47209 * 305.00103 * 13 11 10 36 36 H 0.97000 * 119.99792 * 359.97438 * 14 13 11 37 37 H 1.07998 * 126.28227 * 359.97438 * 18 17 15 38 38 H 1.08006 * 126.16973 * 179.97438 * 19 18 17 39 39 H 1.08005 * 120.07555 * 0.02562 * 22 21 20 40 40 H 1.08002 * 119.92843 * 180.25701 * 23 22 21 41 41 H 1.07990 * 119.84961 * 179.76592 * 24 23 22 42 42 H 1.07996 * 119.92964 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.07393 * 180.02562 * 26 25 24 44 44 H 1.08999 * 113.76822 * 90.33572 * 29 9 7 45 45 H 1.09002 * 113.76914 * 318.93218 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.7204 -3.8101 -0.0015 11 6 0.3477 -4.0833 0.6397 12 8 0.3650 -4.0589 2.0684 13 6 -0.3631 -5.3137 0.0727 14 7 -1.7019 -5.4176 0.6586 15 6 -2.5155 -6.4320 0.3046 16 8 -2.1383 -7.2616 -0.5021 17 6 -3.8527 -6.5392 0.8955 18 6 -4.7813 -7.5254 0.6283 19 6 -5.9119 -7.2535 1.3965 20 6 -5.6601 -6.1079 2.1202 21 6 -6.5919 -5.4609 3.0677 22 6 -6.2101 -4.3015 3.7450 23 6 -7.0863 -3.7000 4.6245 24 6 -8.3372 -4.2492 4.8438 25 6 -8.7199 -5.4012 4.1798 26 6 -7.8554 -6.0096 3.2933 27 7 -4.4017 -5.6767 1.8176 28 1 -3.9672 -4.8930 2.1887 29 6 -0.1031 -2.7575 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 2.5631 -4.0325 0.6531 32 1 1.8322 -4.2362 -0.9984 33 1 -0.5010 -4.2008 2.4747 34 1 0.2102 -6.2085 0.3154 35 1 -0.4467 -5.2184 -1.0099 36 1 -2.0023 -4.7566 1.3019 37 1 -4.6550 -8.3547 -0.0518 38 1 -6.8217 -7.8351 1.4197 39 1 -5.2324 -3.8741 3.5777 40 1 -6.7938 -2.8006 5.1460 41 1 -9.0179 -3.7765 5.5361 42 1 -9.6979 -5.8246 4.3551 43 1 -8.1555 -6.9085 2.7753 44 1 -0.5270 -2.8731 -0.9981 45 1 -0.7167 -2.1393 0.6548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484313475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:16 Heat of formation + Delta-G solvation = 46.137643 kcal Electronic energy + Delta-G solvation = -28322.967039 eV Core-core repulsion = 24308.055373 eV Total energy + Delta-G solvation = -4014.911666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57232 -39.71161 -39.05022 -38.36448 -35.01132 -34.15071 -32.38692 -32.05039 -31.80623 -30.89229 -29.23574 -27.95589 -26.02486 -25.06643 -23.74144 -23.06911 -22.14568 -21.47159 -20.61567 -20.06025 -19.51810 -19.10786 -17.33865 -16.80651 -16.24730 -16.12279 -15.65342 -15.47048 -15.17430 -14.95301 -14.48048 -14.41871 -14.22236 -13.98301 -13.88647 -13.69526 -13.50045 -13.21481 -12.93088 -12.85843 -12.78371 -12.64031 -12.32155 -11.83381 -11.66213 -11.37088 -11.12143 -10.97563 -10.79567 -10.53542 -10.25560 -9.84835 -9.80127 -9.58313 -9.34396 -9.33289 -9.27554 -9.05867 -8.87040 -7.90757 -6.95766 -5.82404 -3.14228 0.47038 1.03396 1.55198 2.54923 2.69876 3.03724 3.30713 3.37303 3.41003 3.42051 3.56234 4.26343 4.38813 4.42219 4.46574 4.58096 4.66901 4.76627 4.92823 5.01145 5.07514 5.10102 5.14298 5.19765 5.22109 5.49147 5.52395 5.63090 5.67759 5.76493 5.85820 5.95279 6.07563 6.08154 6.14828 6.20214 6.31494 6.44318 6.49271 6.52951 6.56623 6.65581 6.93537 7.03215 7.08299 7.36883 7.43215 7.90394 8.00448 8.09393 8.98434 9.64968 10.50347 11.34911 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.002579 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.703503 B =10853.693841 C =12898.751890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.137 3.863 11 C 0.061 3.939 12 O -0.524 6.524 13 C 0.104 3.896 14 N -0.724 5.724 15 C 0.588 3.412 16 O -0.528 6.528 17 C -0.038 4.038 18 C -0.106 4.106 19 C -0.185 4.185 20 C 0.083 3.917 21 C -0.020 4.020 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.100 4.100 27 N -0.530 5.530 28 H 0.417 0.583 29 C 0.144 3.856 30 H 0.254 0.746 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.359 0.641 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.391 0.609 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.035 0.965 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 -13.203 8.622 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.019 3.981 12 O -0.327 6.327 13 C -0.021 4.021 14 N -0.376 5.376 15 C 0.375 3.625 16 O -0.404 6.404 17 C -0.152 4.152 18 C -0.132 4.132 19 C -0.209 4.209 20 C -0.034 4.034 21 C -0.021 4.021 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.118 4.118 27 N -0.126 5.126 28 H 0.255 0.745 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.204 0.796 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.225 0.775 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.052 0.948 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.779 -13.188 7.945 22.772 hybrid contribution -0.092 1.671 0.459 1.735 sum -16.871 -11.517 8.404 22.089 Atomic orbital electron populations 1.69783 1.05051 1.25455 1.56846 1.24769 0.95723 0.97566 1.02380 0.86159 0.78468 0.82916 0.77987 1.21119 1.21552 1.21037 1.18958 0.90289 0.81694 1.43732 0.90113 1.45653 1.01902 0.99194 1.86004 1.22547 0.93262 0.86608 0.96564 1.23814 0.99413 0.93351 0.81562 1.86647 1.33257 1.95154 1.17663 1.22107 0.81260 0.99522 0.99177 1.45838 1.16763 1.28432 1.46551 1.17007 0.82624 0.81437 0.81420 1.90852 1.74672 1.40978 1.33890 1.20513 0.96285 0.97148 1.01296 1.21214 0.92073 0.98742 1.01135 1.21080 1.00287 0.98004 1.01538 1.19118 0.85436 0.97460 1.01356 1.18095 0.93241 0.95068 0.95710 1.21165 0.99907 0.95354 0.97330 1.21091 0.93928 0.99908 0.97977 1.21271 0.96529 0.96270 0.99807 1.21103 0.99634 0.95917 0.96600 1.21116 0.92401 1.00043 0.98285 1.42048 1.12965 1.23545 1.34037 0.74533 1.22901 0.89018 0.89044 0.97192 0.93646 0.92578 0.93100 0.79593 0.90756 0.89914 0.77500 0.83081 0.83566 0.86322 0.85562 0.85858 0.85571 0.85242 0.94766 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.38 55.49 0.63 -26.33 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.35 3.70 -177.81 -0.66 -16.01 16 10 C 0.14 2.78 8.34 -2.98 -0.02 2.76 16 11 C 0.06 1.10 1.52 -89.68 -0.14 0.96 16 12 O -0.52 -9.25 13.51 -35.23 -0.48 -9.73 16 13 C 0.10 1.55 5.28 -4.04 -0.02 1.53 16 14 N -0.72 -9.33 5.33 -61.64 -0.33 -9.66 16 15 C 0.59 8.35 7.78 -12.89 -0.10 8.25 16 16 O -0.53 -9.23 16.87 5.18 0.09 -9.14 16 17 C -0.04 -0.47 7.04 -81.94 -0.58 -1.04 16 18 C -0.11 -1.21 10.60 -39.23 -0.42 -1.62 16 19 C -0.18 -1.80 10.22 -39.32 -0.40 -2.21 16 20 C 0.08 0.82 6.93 -82.07 -0.57 0.25 16 21 C -0.02 -0.18 5.87 -104.97 -0.62 -0.80 16 22 C -0.12 -1.00 9.70 -39.18 -0.38 -1.38 16 23 C -0.11 -0.84 10.03 -39.64 -0.40 -1.24 16 24 C -0.12 -0.83 10.04 -39.49 -0.40 -1.22 16 25 C -0.11 -0.77 10.03 -39.64 -0.40 -1.17 16 26 C -0.10 -0.76 9.57 -39.18 -0.37 -1.13 16 27 N -0.53 -5.19 5.90 -5.81 -0.03 -5.22 16 28 H 0.42 3.19 7.24 -40.82 -0.30 2.89 16 29 C 0.14 3.23 6.92 -2.96 -0.02 3.21 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.36 4.63 7.61 45.56 0.35 4.97 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 36 H 0.39 4.16 6.41 -40.82 -0.26 3.90 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.15 1.06 7.26 -52.48 -0.38 0.68 16 39 H 0.12 0.85 7.14 -52.48 -0.37 0.47 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.76 6.98 -52.49 -0.37 0.39 16 44 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 45 H 0.08 1.89 7.15 -51.93 -0.37 1.52 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -35.48 382.26 -10.17 -45.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.04 Total: 9.10 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -5.09 Total: -1.52 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.39 Total: -57.23 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.39 Total: -18.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.48 -10.17 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484313475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.791 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds