Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99614 * 2 1 4 4 H 1.48496 * 109.47094 * 240.00054 * 3 2 1 5 5 H 1.48497 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 120.00227 * 3 2 1 7 7 C 1.38810 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.49134 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11516 * 155.36558 * 10 9 7 12 12 O 1.42904 * 113.73988 * 269.15722 * 11 10 9 13 13 C 1.52999 * 113.74391 * 137.95496 * 11 10 9 14 14 N 1.46505 * 109.47192 * 184.99912 * 13 11 10 15 15 C 1.34777 * 119.99724 * 180.02562 * 14 13 11 16 16 O 1.21713 * 120.00188 * 359.97438 * 15 14 13 17 17 C 1.46585 * 119.99387 * 179.72471 * 15 14 13 18 18 C 1.38058 * 126.00109 * 180.29686 * 17 15 14 19 19 C 1.39362 * 107.43619 * 180.02562 * 18 17 15 20 20 C 1.37820 * 107.65850 * 0.02562 * 19 18 17 21 21 C 1.47811 * 125.82234 * 180.02562 * 20 19 18 22 22 C 1.39592 * 120.14287 * 179.69989 * 21 20 19 23 23 C 1.37954 * 119.85100 * 179.77248 * 22 21 20 24 24 C 1.38368 * 120.14448 * 0.50316 * 23 22 21 25 25 C 1.38362 * 120.29577 * 359.75144 * 24 23 22 26 26 C 1.37960 * 120.14718 * 359.97438 * 25 24 23 27 27 N 1.36411 * 108.34957 * 359.73637 * 20 19 18 28 28 H 0.96991 * 125.71741 * 180.30343 * 27 20 19 29 29 C 1.47580 * 134.49100 * 0.02562 * 9 7 2 30 30 H 0.96999 * 120.00316 * 359.97438 * 1 2 3 31 31 H 1.09007 * 113.76797 * 41.06650 * 10 9 7 32 32 H 1.08994 * 113.87657 * 269.67751 * 10 9 7 33 33 H 0.96707 * 113.99874 * 178.07236 * 12 11 10 34 34 H 1.09003 * 109.46690 * 65.00076 * 13 11 10 35 35 H 1.08993 * 109.47209 * 305.00103 * 13 11 10 36 36 H 0.97000 * 119.99792 * 359.97438 * 14 13 11 37 37 H 1.07998 * 126.28227 * 359.97438 * 18 17 15 38 38 H 1.08006 * 126.16973 * 179.97438 * 19 18 17 39 39 H 1.08005 * 120.07555 * 0.02562 * 22 21 20 40 40 H 1.08002 * 119.92843 * 180.25701 * 23 22 21 41 41 H 1.07990 * 119.84961 * 179.76592 * 24 23 22 42 42 H 1.07996 * 119.92964 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.07393 * 180.02562 * 26 25 24 44 44 H 1.08999 * 113.76822 * 90.33572 * 29 9 7 45 45 H 1.09002 * 113.76914 * 318.93218 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.7204 -3.8101 -0.0015 11 6 0.3477 -4.0833 0.6397 12 8 0.3650 -4.0589 2.0684 13 6 -0.3631 -5.3137 0.0727 14 7 -1.7019 -5.4176 0.6586 15 6 -2.5155 -6.4320 0.3046 16 8 -2.1383 -7.2616 -0.5021 17 6 -3.8527 -6.5392 0.8955 18 6 -4.7813 -7.5254 0.6283 19 6 -5.9119 -7.2535 1.3965 20 6 -5.6601 -6.1079 2.1202 21 6 -6.5919 -5.4609 3.0677 22 6 -6.2101 -4.3015 3.7450 23 6 -7.0863 -3.7000 4.6245 24 6 -8.3372 -4.2492 4.8438 25 6 -8.7199 -5.4012 4.1798 26 6 -7.8554 -6.0096 3.2933 27 7 -4.4017 -5.6767 1.8176 28 1 -3.9672 -4.8930 2.1887 29 6 -0.1031 -2.7575 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 2.5631 -4.0325 0.6531 32 1 1.8322 -4.2362 -0.9984 33 1 -0.5010 -4.2008 2.4747 34 1 0.2102 -6.2085 0.3154 35 1 -0.4467 -5.2184 -1.0099 36 1 -2.0023 -4.7566 1.3019 37 1 -4.6550 -8.3547 -0.0518 38 1 -6.8217 -7.8351 1.4197 39 1 -5.2324 -3.8741 3.5777 40 1 -6.7938 -2.8006 5.1460 41 1 -9.0179 -3.7765 5.5361 42 1 -9.6979 -5.8246 4.3551 43 1 -8.1555 -6.9085 2.7753 44 1 -0.5270 -2.8731 -0.9981 45 1 -0.7167 -2.1393 0.6548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484313475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 20.850749 kcal Electronic energy + Delta-G solvation = -28324.063561 eV Core-core repulsion = 24308.055373 eV Total energy + Delta-G solvation = -4016.008188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40542 -40.99508 -39.99707 -39.41585 -36.57624 -35.42828 -34.05541 -33.02354 -32.53374 -31.54610 -30.56506 -29.19503 -27.55516 -26.77707 -24.70786 -23.76875 -23.54273 -22.42009 -21.45570 -21.16090 -20.80422 -20.12193 -18.83078 -18.06404 -17.47668 -17.24116 -16.85889 -16.58371 -16.36845 -15.87193 -15.76236 -15.61466 -15.33874 -15.14917 -15.01413 -14.67446 -14.51139 -14.39564 -14.26748 -13.93822 -13.64094 -13.60047 -13.43838 -13.39910 -13.00061 -12.83180 -12.59142 -12.30101 -12.20939 -11.89761 -11.82792 -11.55187 -11.21626 -10.99748 -10.78123 -10.49239 -10.27871 -10.07323 -9.87837 -8.97018 -8.66713 -7.94070 -5.26844 -0.22149 0.48794 0.70409 1.43555 1.46892 1.52680 1.80455 1.85825 1.99522 2.29366 2.44124 2.97983 2.99336 3.24661 3.29996 3.51525 3.59805 3.77948 3.82953 3.93177 4.06426 4.26482 4.29501 4.31940 4.39484 4.56015 4.60647 4.65702 4.70681 4.74028 4.87768 4.90821 5.04440 5.11121 5.12899 5.13167 5.16336 5.27652 5.40427 5.44885 5.52929 5.61748 5.76905 5.84009 5.88642 6.04294 6.23269 6.39796 6.73942 6.88265 6.99379 7.56232 8.49091 9.22301 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.002579 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.703503 B =10853.693841 C =12898.751890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.636 5.636 10 C 0.130 3.870 11 C 0.097 3.903 12 O -0.538 6.538 13 C 0.118 3.882 14 N -0.716 5.716 15 C 0.591 3.409 16 O -0.566 6.566 17 C -0.064 4.064 18 C -0.111 4.111 19 C -0.190 4.190 20 C 0.092 3.908 21 C -0.042 4.042 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.103 4.103 27 N -0.524 5.524 28 H 0.424 0.576 29 C 0.144 3.856 30 H 0.249 0.751 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.380 0.620 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.403 0.597 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.026 0.974 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 -13.748 9.810 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.005 3.995 11 C 0.054 3.946 12 O -0.344 6.344 13 C -0.006 4.006 14 N -0.368 5.368 15 C 0.380 3.620 16 O -0.445 6.445 17 C -0.177 4.177 18 C -0.138 4.138 19 C -0.214 4.214 20 C -0.026 4.026 21 C -0.043 4.043 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.122 4.122 27 N -0.120 5.120 28 H 0.264 0.736 29 C 0.018 3.982 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.170 0.830 38 H 0.189 0.811 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.043 0.957 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.043 -13.745 9.161 24.462 hybrid contribution 0.194 1.823 0.186 1.842 sum -17.848 -11.922 9.348 23.411 Atomic orbital electron populations 1.69961 1.06275 1.25666 1.58107 1.25601 0.96677 1.00761 1.02835 0.85139 0.77194 0.78709 0.78209 1.20369 1.21821 1.20350 1.19341 0.90817 0.83238 1.42947 0.90013 1.46040 1.03459 1.00422 1.86266 1.22791 0.94654 0.84082 0.97997 1.23179 0.97560 0.92251 0.81592 1.86596 1.35328 1.95128 1.17316 1.21809 0.82070 0.98095 0.98672 1.45677 1.15966 1.28606 1.46544 1.17214 0.83194 0.80802 0.80794 1.90825 1.75594 1.42377 1.35693 1.20213 0.95763 0.98639 1.03089 1.21424 0.92564 0.98590 1.01206 1.21376 1.00708 0.98238 1.01034 1.19440 0.85223 0.97196 1.00756 1.18205 0.93870 0.95793 0.96424 1.21360 1.00509 0.95533 0.97686 1.21344 0.94343 1.00513 0.98083 1.21625 0.96471 0.96209 0.99669 1.21448 1.00531 0.95722 0.95920 1.21408 0.91913 1.00538 0.98322 1.42001 1.13037 1.23504 1.33507 0.73623 1.22843 0.87561 0.91186 0.96633 0.94253 0.92292 0.90888 0.77106 0.89678 0.90455 0.76172 0.82988 0.81106 0.85894 0.84430 0.83777 0.83108 0.83614 0.95652 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 11.38 21.65 0.25 -56.39 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.36 10.70 84.03 0.90 -12.46 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.64 -32.70 3.70 -720.30 -2.66 -35.36 16 10 C 0.13 5.21 8.34 86.48 0.72 5.93 16 11 C 0.10 3.40 1.52 -10.12 -0.02 3.39 16 12 O -0.54 -18.37 13.51 -148.98 -2.01 -20.38 16 13 C 0.12 3.43 5.28 86.38 0.46 3.89 16 14 N -0.72 -18.00 5.33 -467.15 -2.49 -20.49 16 15 C 0.59 16.65 7.78 86.42 0.67 17.32 16 16 O -0.57 -19.84 16.87 -4.39 -0.07 -19.92 16 17 C -0.06 -1.51 7.04 40.36 0.28 -1.23 16 18 C -0.11 -2.48 10.60 22.50 0.24 -2.24 16 19 C -0.19 -3.43 10.22 22.44 0.23 -3.20 16 20 C 0.09 1.69 6.93 40.87 0.28 1.98 16 21 C -0.04 -0.69 5.87 -20.09 -0.12 -0.81 16 22 C -0.13 -2.10 9.70 22.53 0.22 -1.88 16 23 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 24 C -0.12 -1.39 10.04 22.33 0.22 -1.16 16 25 C -0.12 -1.28 10.03 22.23 0.22 -1.05 16 26 C -0.10 -1.34 9.57 22.53 0.22 -1.13 16 27 N -0.52 -9.89 5.90 -172.30 -1.02 -10.91 16 28 H 0.42 6.24 7.24 -92.72 -0.67 5.57 16 29 C 0.14 6.53 6.92 86.49 0.60 7.13 16 30 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 33 H 0.38 9.26 7.61 -74.05 -0.56 8.70 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.38 8.04 -2.39 -0.02 2.37 16 36 H 0.40 8.26 6.41 -92.71 -0.59 7.67 16 37 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.17 2.08 7.26 -2.91 -0.02 2.06 16 39 H 0.12 1.69 7.14 -2.91 -0.02 1.67 16 40 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.14 0.98 8.06 -2.92 -0.02 0.95 16 42 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.15 1.31 6.98 -2.91 -0.02 1.29 16 44 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 45 H 0.05 2.53 7.15 -2.39 -0.02 2.52 16 Total: -1.00 -76.83 382.26 -0.93 -77.77 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.77 Total: 28.10 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.82 Total: 9.69 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.93 Total: -123.14 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.09 Total: -40.30 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.83 -0.93 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484313475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.619 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds