Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99940 * 3 2 1 5 5 H 1.48497 * 109.47241 * 29.99707 * 3 2 1 6 6 H 1.48497 * 109.47361 * 150.00083 * 3 2 1 7 7 C 1.38811 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00234 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.51304 * 60.09975 * 11 10 9 13 13 C 1.53288 * 109.51390 * 180.25529 * 11 10 9 14 14 N 1.47157 * 108.38788 * 172.22124 * 13 11 10 15 15 C 1.34770 * 120.98093 * 129.73275 * 14 13 11 16 16 O 1.21555 * 120.00326 * 353.76380 * 15 14 13 17 17 C 1.47894 * 119.99869 * 173.75758 * 15 14 13 18 18 C 1.40596 * 119.72721 * 328.96083 * 17 15 14 19 19 C 1.35850 * 120.94786 * 179.75107 * 18 17 15 20 20 C 1.40500 * 119.88060 * 0.52014 * 19 18 17 21 21 C 1.40480 * 121.83591 * 179.70047 * 20 19 18 22 22 N 1.31212 * 119.93625 * 180.02562 * 21 20 19 23 23 C 1.32553 * 122.80701 * 0.02562 * 22 21 20 24 24 C 1.36220 * 121.84575 * 0.02562 * 23 22 21 25 25 C 1.40762 * 118.67887 * 359.97438 * 24 23 22 26 26 C 1.38531 * 119.72539 * 149.23746 * 17 15 14 27 27 C 1.47149 * 118.03530 * 309.46907 * 14 13 11 28 28 C 1.53297 * 108.38638 * 50.52903 * 27 14 13 29 29 O 1.42958 * 109.22380 * 307.69829 * 28 27 14 30 30 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99831 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47131 * 60.00240 * 10 9 7 33 33 H 1.08999 * 109.47408 * 300.00467 * 10 9 7 34 34 H 1.09001 * 109.68175 * 52.50163 * 13 11 10 35 35 H 1.08997 * 109.68486 * 291.94948 * 13 11 10 36 36 H 1.08001 * 119.52645 * 359.97438 * 18 17 15 37 37 H 1.08000 * 120.06025 * 180.28875 * 19 18 17 38 38 H 1.07995 * 120.03209 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.07577 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.65955 * 179.97438 * 24 23 22 41 41 H 1.07993 * 120.37116 * 0.02562 * 26 17 15 42 42 H 1.09005 * 109.67961 * 170.25010 * 27 14 13 43 43 H 1.09000 * 109.68037 * 290.76851 * 27 14 13 44 44 H 1.09006 * 109.51048 * 67.62097 * 28 27 14 45 45 H 1.09002 * 109.51299 * 187.77161 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4377 -4.7630 -0.8924 13 6 1.8294 -6.1477 0.0032 14 7 0.8620 -7.2404 0.1917 15 6 0.8544 -8.3096 -0.6288 16 8 1.5761 -8.3304 -1.6067 17 6 -0.0318 -9.4576 -0.3392 18 6 -0.3483 -9.7753 0.9933 19 6 -1.1638 -10.8213 1.2873 20 6 -1.6940 -11.6083 0.2512 21 6 -2.5362 -12.7028 0.5087 22 7 -3.0101 -13.4129 -0.4877 23 6 -2.7301 -13.1475 -1.7558 24 6 -1.9231 -12.1094 -2.1116 25 6 -1.3759 -11.3009 -1.0976 26 6 -0.5386 -10.2145 -1.3829 27 6 -0.0930 -7.1340 1.3061 28 6 -0.7649 -5.7579 1.2374 29 8 0.2420 -4.7456 1.1654 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8878 33 1 2.6842 -3.7141 -0.8921 34 1 2.5516 -6.1520 0.8196 35 1 2.3480 -6.2764 -0.9469 36 1 0.0599 -9.1771 1.7945 37 1 -1.4012 -11.0497 2.3159 38 1 -2.7933 -12.9595 1.5257 39 1 -3.1531 -13.7723 -2.5286 40 1 -1.7073 -11.9107 -3.1510 41 1 -0.2897 -9.9709 -2.4052 42 1 -0.8477 -7.9157 1.2188 43 1 0.4355 -7.2382 2.2537 44 1 -1.3978 -5.7056 0.3515 45 1 -1.3724 -5.6043 2.1294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484693078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = 13.224164 kcal Electronic energy + Delta-G solvation = -28610.266106 eV Core-core repulsion = 24593.927205 eV Total energy + Delta-G solvation = -4016.338902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48906 -40.42204 -38.54841 -37.39570 -35.23399 -34.45924 -33.48273 -32.50034 -31.65460 -30.27246 -30.04534 -28.28270 -26.27741 -24.65854 -24.45643 -23.46062 -22.80470 -22.40636 -20.99686 -20.02863 -18.82900 -17.70859 -17.17007 -17.12696 -16.68144 -16.46383 -15.96375 -15.58809 -15.39151 -15.21733 -14.67946 -14.60410 -14.51322 -14.27039 -14.05701 -13.95875 -13.50501 -13.32697 -13.08710 -12.94849 -12.66332 -12.63380 -12.41576 -11.99584 -11.65535 -11.55774 -11.05212 -10.91270 -10.79282 -10.72809 -10.53227 -10.23664 -10.05356 -9.94269 -9.90816 -9.69123 -9.50749 -8.86868 -8.65953 -8.56131 -6.89489 -5.73041 -3.01806 -0.23856 0.21807 1.37247 2.11132 2.55957 2.89270 3.45736 3.50517 3.52490 3.58330 3.89610 3.92137 3.96987 4.03756 4.25647 4.31119 4.49685 4.56579 4.61607 4.66964 4.72777 4.84423 4.99213 5.03694 5.10787 5.18743 5.19913 5.23406 5.39162 5.43841 5.53940 5.58827 5.59632 5.64734 5.74806 5.77483 5.83134 5.90457 6.10408 6.18587 6.24302 6.26758 6.53786 6.67138 7.06875 7.41420 7.48847 7.71658 7.82357 8.45046 9.56814 10.13838 10.49804 11.49708 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.001997 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.795210 B =14019.671475 C =14195.854221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.605 5.605 15 C 0.558 3.442 16 O -0.531 6.531 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.099 4.099 21 C 0.144 3.856 22 N -0.484 5.484 23 C 0.073 3.927 24 C -0.144 4.144 25 C -0.033 4.033 26 C -0.046 4.046 27 C 0.056 3.944 28 C 0.045 3.955 29 O -0.355 6.355 30 H 0.255 0.745 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -28.242 2.448 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.338 5.338 15 C 0.346 3.654 16 O -0.408 6.408 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.101 4.101 21 C -0.028 4.028 22 N -0.192 5.192 23 C -0.069 4.069 24 C -0.164 4.164 25 C -0.038 4.038 26 C -0.065 4.065 27 C -0.067 4.067 28 C -0.033 4.033 29 O -0.273 6.273 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.519 -28.711 2.087 29.311 hybrid contribution 0.611 1.463 -0.325 1.618 sum -4.908 -27.249 1.762 27.743 Atomic orbital electron populations 1.69680 1.05112 1.25561 1.57670 1.24752 0.95540 0.97695 1.03046 0.86170 0.78628 0.83794 0.77473 1.21757 1.21789 1.20755 1.19225 0.91019 0.84079 1.42726 0.91132 1.42204 1.06061 0.99426 1.89326 1.20625 0.92332 0.84703 0.98819 1.22802 0.92998 0.94154 0.88567 0.91836 1.22416 0.91400 0.85500 1.04422 1.48023 1.35122 1.20269 1.30426 1.18308 0.82589 0.82101 0.82375 1.90804 1.42399 1.80446 1.27126 1.19977 0.99772 0.97080 0.94306 1.21353 0.97727 0.97395 0.95768 1.20919 0.96959 0.94208 0.98916 1.19172 0.99487 0.97923 0.93500 1.23273 0.91261 0.89487 0.98764 1.67399 1.22145 1.29182 1.00444 1.22224 0.95750 0.95868 0.93106 1.22017 0.98289 0.96059 1.00006 1.18127 0.96999 0.95608 0.93044 1.21394 0.93409 0.91950 0.99748 1.23122 0.93270 1.00362 0.89913 1.22951 0.90953 0.86448 1.02968 1.88177 1.46003 1.50486 1.42657 0.93565 0.77823 0.95335 0.94659 0.90064 0.87818 0.83852 0.84076 0.81675 0.82723 0.84026 0.83795 0.87790 0.89926 0.92781 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.87 5.49 -59.92 -0.33 -19.20 16 10 C 0.16 3.32 5.96 -4.05 -0.02 3.30 16 11 C 0.07 1.24 2.87 -26.58 -0.08 1.16 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.09 1.18 5.94 -3.53 -0.02 1.16 16 14 N -0.61 -7.40 3.02 -173.37 -0.52 -7.92 16 15 C 0.56 7.24 7.43 -12.31 -0.09 7.15 16 16 O -0.53 -8.65 16.17 5.32 0.09 -8.56 16 17 C -0.11 -1.08 5.41 -104.95 -0.57 -1.65 16 18 C -0.10 -0.77 7.29 -39.55 -0.29 -1.06 16 19 C -0.09 -0.56 9.77 -39.59 -0.39 -0.94 16 20 C -0.10 -0.76 5.75 -106.78 -0.61 -1.38 16 21 C 0.14 1.02 11.04 -16.97 -0.19 0.84 16 22 N -0.48 -4.23 10.29 -13.15 -0.14 -4.37 16 23 C 0.07 0.55 11.07 -17.97 -0.20 0.35 16 24 C -0.14 -1.07 9.88 -39.35 -0.39 -1.46 16 25 C -0.03 -0.29 5.74 -106.83 -0.61 -0.90 16 26 C -0.05 -0.45 9.38 -38.78 -0.36 -0.81 16 27 C 0.06 0.53 4.85 -3.53 -0.02 0.51 16 28 C 0.04 0.54 6.98 37.31 0.26 0.80 16 29 O -0.36 -6.04 10.13 -35.23 -0.36 -6.40 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.74 7.54 -40.82 -0.31 10.43 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.50 7.06 -51.93 -0.37 1.14 16 36 H 0.14 0.84 5.48 -52.49 -0.29 0.56 16 37 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 1.35 7.91 -52.49 -0.42 0.94 16 42 H 0.10 0.76 4.52 -51.93 -0.23 0.52 16 43 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -36.00 371.50 -9.58 -45.58 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.80 Total: 5.97 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.82 Total: -0.42 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.26 Total: -59.40 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.27 Total: -14.96 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.00 -9.58 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484693078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.807 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds