Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99940 * 3 2 1 5 5 H 1.48497 * 109.47241 * 29.99707 * 3 2 1 6 6 H 1.48497 * 109.47361 * 150.00083 * 3 2 1 7 7 C 1.38811 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00234 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.51304 * 60.09975 * 11 10 9 13 13 C 1.53288 * 109.51390 * 180.25529 * 11 10 9 14 14 N 1.47157 * 108.38788 * 172.22124 * 13 11 10 15 15 C 1.34770 * 120.98093 * 129.73275 * 14 13 11 16 16 O 1.21555 * 120.00326 * 353.76380 * 15 14 13 17 17 C 1.47894 * 119.99869 * 173.75758 * 15 14 13 18 18 C 1.40596 * 119.72721 * 328.96083 * 17 15 14 19 19 C 1.35850 * 120.94786 * 179.75107 * 18 17 15 20 20 C 1.40500 * 119.88060 * 0.52014 * 19 18 17 21 21 C 1.40480 * 121.83591 * 179.70047 * 20 19 18 22 22 N 1.31212 * 119.93625 * 180.02562 * 21 20 19 23 23 C 1.32553 * 122.80701 * 0.02562 * 22 21 20 24 24 C 1.36220 * 121.84575 * 0.02562 * 23 22 21 25 25 C 1.40762 * 118.67887 * 359.97438 * 24 23 22 26 26 C 1.38531 * 119.72539 * 149.23746 * 17 15 14 27 27 C 1.47149 * 118.03530 * 309.46907 * 14 13 11 28 28 C 1.53297 * 108.38638 * 50.52903 * 27 14 13 29 29 O 1.42958 * 109.22380 * 307.69829 * 28 27 14 30 30 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99831 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47131 * 60.00240 * 10 9 7 33 33 H 1.08999 * 109.47408 * 300.00467 * 10 9 7 34 34 H 1.09001 * 109.68175 * 52.50163 * 13 11 10 35 35 H 1.08997 * 109.68486 * 291.94948 * 13 11 10 36 36 H 1.08001 * 119.52645 * 359.97438 * 18 17 15 37 37 H 1.08000 * 120.06025 * 180.28875 * 19 18 17 38 38 H 1.07995 * 120.03209 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.07577 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.65955 * 179.97438 * 24 23 22 41 41 H 1.07993 * 120.37116 * 0.02562 * 26 17 15 42 42 H 1.09005 * 109.67961 * 170.25010 * 27 14 13 43 43 H 1.09000 * 109.68037 * 290.76851 * 27 14 13 44 44 H 1.09006 * 109.51048 * 67.62097 * 28 27 14 45 45 H 1.09002 * 109.51299 * 187.77161 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4377 -4.7630 -0.8924 13 6 1.8294 -6.1477 0.0032 14 7 0.8620 -7.2404 0.1917 15 6 0.8544 -8.3096 -0.6288 16 8 1.5761 -8.3304 -1.6067 17 6 -0.0318 -9.4576 -0.3392 18 6 -0.3483 -9.7753 0.9933 19 6 -1.1638 -10.8213 1.2873 20 6 -1.6940 -11.6083 0.2512 21 6 -2.5362 -12.7028 0.5087 22 7 -3.0101 -13.4129 -0.4877 23 6 -2.7301 -13.1475 -1.7558 24 6 -1.9231 -12.1094 -2.1116 25 6 -1.3759 -11.3009 -1.0976 26 6 -0.5386 -10.2145 -1.3829 27 6 -0.0930 -7.1340 1.3061 28 6 -0.7649 -5.7579 1.2374 29 8 0.2420 -4.7456 1.1654 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8878 33 1 2.6842 -3.7141 -0.8921 34 1 2.5516 -6.1520 0.8196 35 1 2.3480 -6.2764 -0.9469 36 1 0.0599 -9.1771 1.7945 37 1 -1.4012 -11.0497 2.3159 38 1 -2.7933 -12.9595 1.5257 39 1 -3.1531 -13.7723 -2.5286 40 1 -1.7073 -11.9107 -3.1510 41 1 -0.2897 -9.9709 -2.4052 42 1 -0.8477 -7.9157 1.2188 43 1 0.4355 -7.2382 2.2537 44 1 -1.3978 -5.7056 0.3515 45 1 -1.3724 -5.6043 2.1294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484693078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -11.642895 kcal Electronic energy + Delta-G solvation = -28611.344423 eV Core-core repulsion = 24593.927205 eV Total energy + Delta-G solvation = -4017.417218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19261 -41.28760 -39.66123 -38.09981 -36.71174 -35.88916 -34.07482 -33.97295 -32.67473 -31.67241 -30.71798 -29.42425 -27.64282 -25.77088 -25.19614 -24.63720 -23.86569 -23.28670 -22.38526 -20.92879 -19.58230 -19.18633 -18.38263 -17.96432 -17.55850 -17.46945 -16.98717 -16.63053 -16.60499 -16.09615 -15.91791 -15.74479 -15.37043 -15.25321 -15.04113 -14.71247 -14.66818 -14.47702 -14.43638 -14.05175 -13.82914 -13.53205 -13.36005 -13.19091 -12.82014 -12.74979 -12.63189 -12.29441 -12.14179 -12.06391 -11.86996 -11.68793 -11.28475 -11.26972 -11.04627 -10.95911 -10.51957 -10.19148 -9.69581 -9.13181 -9.01255 -7.94302 -5.23888 -0.84316 -0.37222 0.78398 1.35649 1.47559 1.50066 1.58399 1.61762 2.13384 2.56214 2.72837 3.01088 3.16175 3.39389 3.47553 3.50856 3.53337 3.70625 3.77920 3.83145 3.89136 3.97082 4.02944 4.06038 4.11038 4.28770 4.30720 4.40917 4.45130 4.57521 4.60674 4.63247 4.71900 4.73929 4.81094 4.91062 4.93016 5.00898 5.07144 5.11742 5.19470 5.23691 5.48249 5.59260 5.69177 6.12237 6.20527 6.27449 6.83987 6.95586 7.33210 8.07198 8.31854 9.29399 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.001997 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.795210 B =14019.671475 C =14195.854221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.160 3.840 11 C 0.087 3.913 12 H 0.044 0.956 13 C 0.095 3.905 14 N -0.605 5.605 15 C 0.555 3.445 16 O -0.575 6.575 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.069 4.069 20 C -0.110 4.110 21 C 0.148 3.852 22 N -0.509 5.509 23 C 0.068 3.932 24 C -0.155 4.155 25 C -0.047 4.047 26 C -0.060 4.060 27 C 0.061 3.939 28 C 0.036 3.964 29 O -0.384 6.384 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.200 0.800 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 -29.965 4.601 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.028 3.972 12 H 0.062 0.938 13 C -0.028 4.028 14 N -0.337 5.337 15 C 0.346 3.654 16 O -0.455 6.455 17 C -0.121 4.121 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.112 4.112 21 C -0.024 4.024 22 N -0.217 5.217 23 C -0.075 4.075 24 C -0.174 4.174 25 C -0.052 4.052 26 C -0.080 4.080 27 C -0.060 4.060 28 C -0.041 4.041 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.217 0.783 39 H 0.191 0.809 40 H 0.172 0.828 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.670 -30.473 4.256 31.287 hybrid contribution 0.603 1.872 -0.988 2.201 sum -5.067 -28.601 3.268 29.230 Atomic orbital electron populations 1.69847 1.06715 1.26060 1.59413 1.25636 0.96471 1.01293 1.03641 0.85075 0.77697 0.79152 0.77424 1.21406 1.22117 1.19245 1.19672 0.91614 0.85204 1.41338 0.90328 1.42399 1.05703 1.00828 1.89351 1.20777 0.93038 0.83892 0.99001 1.22452 0.92343 0.94237 0.88121 0.93767 1.22159 0.91530 0.84624 1.04527 1.48090 1.35117 1.19446 1.31041 1.18808 0.82308 0.82776 0.81547 1.90773 1.44340 1.81427 1.28992 1.19878 1.00008 0.96287 0.95949 1.21508 0.98363 0.98458 0.94665 1.21345 0.94716 0.92366 1.00381 1.19464 0.99778 0.98534 0.93407 1.23841 0.90063 0.88536 0.99914 1.67459 1.23074 1.30068 1.01122 1.22571 0.95466 0.95952 0.93468 1.22208 0.98451 0.96109 1.00648 1.18306 0.97098 0.95508 0.94322 1.21371 0.94392 0.92766 0.99422 1.23336 0.93485 0.99374 0.89845 1.23272 0.90219 0.86819 1.03793 1.88113 1.47127 1.52883 1.42191 0.94021 0.79314 0.94812 0.94015 0.88584 0.88888 0.81832 0.79938 0.78345 0.80878 0.82776 0.84922 0.85051 0.87377 0.93752 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.74 -39.26 5.49 -343.47 -1.89 -41.15 16 10 C 0.16 6.58 5.96 86.38 0.51 7.09 16 11 C 0.09 2.98 2.87 30.69 0.09 3.07 16 12 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 13 C 0.09 2.61 5.94 86.35 0.51 3.13 16 14 N -0.60 -14.21 3.02 -820.70 -2.48 -16.69 16 15 C 0.56 14.36 7.43 86.80 0.65 15.00 16 16 O -0.57 -19.48 16.17 -3.89 -0.06 -19.54 16 17 C -0.12 -2.26 5.41 -20.07 -0.11 -2.36 16 18 C -0.11 -1.31 7.29 22.29 0.16 -1.15 16 19 C -0.07 -0.57 9.77 22.27 0.22 -0.35 16 20 C -0.11 -1.41 5.75 -21.26 -0.12 -1.53 16 21 C 0.15 1.66 11.04 85.33 0.94 2.61 16 22 N -0.51 -7.90 10.29 -195.52 -2.01 -9.92 16 23 C 0.07 0.93 11.07 84.11 0.93 1.87 16 24 C -0.15 -2.21 9.88 22.42 0.22 -1.99 16 25 C -0.05 -0.79 5.74 -21.29 -0.12 -0.91 16 26 C -0.06 -1.18 9.38 22.79 0.21 -0.96 16 27 C 0.06 0.99 4.85 86.35 0.42 1.40 16 28 C 0.04 0.81 6.98 72.08 0.50 1.31 16 29 O -0.38 -12.97 10.13 -148.98 -1.51 -14.48 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.38 21.46 7.54 -92.70 -0.70 20.76 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 2.77 7.06 -2.39 -0.02 2.76 16 36 H 0.16 1.21 5.48 -2.91 -0.02 1.19 16 37 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 39 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.13 2.73 7.91 -2.91 -0.02 2.71 16 42 H 0.13 1.46 4.52 -2.38 -0.01 1.45 16 43 H 0.11 1.30 7.88 -2.39 -0.02 1.28 16 44 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -80.41 371.50 1.02 -79.39 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.33 Total: 25.20 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.32 Total: 8.80 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -6.10 Total: -128.26 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.57 Total: -34.02 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -80.41 1.02 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484693078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.748 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds