Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99968 * 2 1 4 4 H 1.48505 * 109.46938 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47234 * 29.99666 * 3 2 1 6 6 H 1.48503 * 109.47380 * 149.99898 * 3 2 1 7 7 C 1.38813 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99537 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46698 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51475 * 304.89955 * 11 10 9 13 13 C 1.52882 * 109.62314 * 184.90453 * 11 10 9 14 14 N 1.47156 * 108.60486 * 187.89883 * 13 11 10 15 15 C 1.34773 * 120.97662 * 230.49940 * 14 13 11 16 16 O 1.21550 * 120.00627 * 5.50454 * 15 14 13 17 17 C 1.47888 * 119.99848 * 185.50361 * 15 14 13 18 18 C 1.40592 * 119.73351 * 219.22352 * 17 15 14 19 19 C 1.35852 * 120.95791 * 180.02562 * 18 17 15 20 20 C 1.40493 * 119.87504 * 359.95829 * 19 18 17 21 21 C 1.40485 * 121.83865 * 180.02562 * 20 19 18 22 22 N 1.31210 * 119.94521 * 180.02562 * 21 20 19 23 23 C 1.32555 * 122.79714 * 0.02562 * 22 21 20 24 24 C 1.36223 * 121.85156 * 359.97281 * 23 22 21 25 25 C 1.40758 * 118.67434 * 0.02736 * 24 23 22 26 26 C 1.38535 * 119.73083 * 39.24271 * 17 15 14 27 27 C 1.47150 * 118.03619 * 50.23247 * 14 13 11 28 28 C 1.53295 * 108.38046 * 309.71208 * 27 14 13 29 29 O 1.42954 * 109.22712 * 52.30641 * 28 27 14 30 30 H 0.96992 * 120.00311 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46827 * 60.00019 * 10 9 7 33 33 H 1.09001 * 109.46921 * 299.99913 * 10 9 7 34 34 H 1.09002 * 109.61587 * 68.08005 * 13 11 10 35 35 H 1.09001 * 109.52290 * 307.66116 * 13 11 10 36 36 H 1.08005 * 119.52187 * 359.97438 * 18 17 15 37 37 H 1.08000 * 120.06202 * 179.97438 * 19 18 17 38 38 H 1.08008 * 120.03008 * 0.09073 * 21 20 19 39 39 H 1.08000 * 119.07560 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.66252 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.35907 * 0.02615 * 26 17 15 42 42 H 1.08991 * 109.68319 * 69.43718 * 27 14 13 43 43 H 1.09003 * 109.67805 * 189.98870 * 27 14 13 44 44 H 1.09009 * 109.51084 * 172.23354 * 28 27 14 45 45 H 1.09003 * 109.51460 * 292.37472 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3808 -4.7143 0.8440 13 6 1.8208 -6.1423 0.1243 14 7 0.8687 -7.2478 -0.0679 15 6 0.8008 -8.2657 0.8127 16 8 1.4596 -8.2313 1.8336 17 6 -0.0755 -9.4247 0.5370 18 6 -0.8022 -10.0146 1.5861 19 6 -1.6140 -11.0804 1.3610 20 6 -1.7353 -11.6061 0.0638 21 6 -2.5630 -12.7063 -0.2156 22 7 -2.6481 -13.1674 -1.4411 23 6 -1.9782 -12.6385 -2.4553 24 6 -1.1494 -11.5702 -2.2904 25 6 -1.0058 -11.0191 -1.0031 26 6 -0.1733 -9.9206 -0.7528 27 6 -0.0110 -7.2059 -1.2467 28 6 -0.6823 -5.8288 -1.3002 29 8 0.3202 -4.8129 -1.2199 30 1 -0.4850 0.8399 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8895 34 1 2.2726 -6.2147 1.1137 35 1 2.5976 -6.1899 -0.6389 36 1 -0.7131 -9.6152 2.5856 37 1 -2.1653 -11.5225 2.1777 38 1 -3.1297 -13.1716 0.5775 39 1 -2.0929 -13.0667 -3.4402 40 1 -0.6130 -11.1542 -3.1305 41 1 0.3868 -9.4657 -1.5564 42 1 0.5782 -7.3624 -2.1502 43 1 -0.7717 -7.9823 -1.1648 44 1 -1.2298 -5.7267 -2.2373 45 1 -1.3718 -5.7270 -0.4621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484693079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = 6.363023 kcal Electronic energy + Delta-G solvation = -28706.587621 eV Core-core repulsion = 24689.951198 eV Total energy + Delta-G solvation = -4016.636423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48915 -40.40248 -38.58491 -37.33940 -35.24361 -34.48358 -33.51490 -32.42598 -31.69518 -30.39482 -29.97514 -28.26204 -26.11567 -24.97163 -24.10342 -23.68206 -22.78188 -22.42219 -21.01453 -20.07505 -18.41049 -17.87994 -17.50027 -17.11707 -16.57573 -16.44474 -16.07428 -15.52573 -15.44190 -15.16576 -14.67747 -14.61928 -14.59953 -14.24261 -14.03815 -13.99004 -13.39608 -13.19339 -13.17982 -13.01816 -12.67264 -12.63482 -12.43755 -12.09748 -11.69060 -11.59234 -11.06197 -10.91068 -10.80854 -10.72334 -10.56045 -10.23565 -10.04830 -9.96846 -9.91416 -9.69843 -9.54090 -8.87679 -8.68270 -8.55196 -6.90507 -5.73716 -3.02626 -0.26811 0.26319 1.34905 2.13641 2.52665 2.84929 3.45547 3.50242 3.52152 3.56983 3.87331 3.89542 3.95253 4.03295 4.27743 4.32519 4.52107 4.54081 4.58390 4.67645 4.77804 4.81682 4.98297 5.03688 5.06300 5.15660 5.18916 5.22877 5.35392 5.44818 5.57064 5.58549 5.59005 5.63609 5.74316 5.79272 5.83643 5.89291 6.09645 6.16906 6.24276 6.26257 6.53215 6.66256 7.04859 7.40316 7.48727 7.71148 7.80761 8.44274 9.55997 10.12630 10.48386 11.49099 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026081 B = 0.002083 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.336243 B =13439.783706 C =13850.153753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.605 5.605 15 C 0.557 3.443 16 O -0.527 6.527 17 C -0.097 4.097 18 C -0.075 4.075 19 C -0.088 4.088 20 C -0.100 4.100 21 C 0.145 3.855 22 N -0.485 5.485 23 C 0.074 3.926 24 C -0.147 4.147 25 C -0.032 4.032 26 C -0.078 4.078 27 C 0.061 3.939 28 C 0.046 3.954 29 O -0.357 6.357 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -28.170 -3.026 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.014 3.986 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.339 5.339 15 C 0.345 3.655 16 O -0.404 6.404 17 C -0.102 4.102 18 C -0.094 4.094 19 C -0.108 4.108 20 C -0.102 4.102 21 C -0.026 4.026 22 N -0.192 5.192 23 C -0.069 4.069 24 C -0.167 4.167 25 C -0.037 4.037 26 C -0.097 4.097 27 C -0.061 4.061 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.126 -28.589 -2.954 29.195 hybrid contribution 0.611 1.469 0.196 1.603 sum -4.515 -27.120 -2.758 27.631 Atomic orbital electron populations 1.69670 1.05125 1.25599 1.57655 1.24751 0.95540 0.97710 1.03013 0.86170 0.78619 0.83767 0.77503 1.21717 1.21802 1.20745 1.19224 0.91027 0.84053 1.42759 0.91107 1.42229 1.06007 0.99484 1.89376 1.20616 0.92355 0.84611 0.98872 1.22730 0.94262 0.94169 0.87391 0.91773 1.22334 0.91635 0.85243 1.04525 1.48067 1.38424 1.22533 1.24831 1.18336 0.82044 0.82195 0.82918 1.90813 1.44937 1.79177 1.25488 1.20022 0.98792 0.97095 0.94265 1.20896 0.94411 0.95071 0.99006 1.20930 0.98416 0.95881 0.95542 1.19169 0.98797 0.97834 0.94373 1.23281 0.93890 0.91324 0.94135 1.67409 1.21474 1.30169 1.00196 1.22225 0.93055 0.93588 0.97983 1.21987 1.00304 0.97839 0.96533 1.18079 0.96531 0.95414 0.93643 1.21604 0.97093 0.94914 0.96082 1.22889 0.94604 1.00341 0.88312 1.22928 0.90944 0.86280 1.03101 1.88169 1.49357 1.52017 1.37912 0.93545 0.77909 0.94586 0.95230 0.87751 0.90081 0.84392 0.84079 0.81702 0.82754 0.84074 0.83954 0.90049 0.88500 0.87633 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.88 5.55 -59.90 -0.33 -19.21 16 10 C 0.16 3.32 5.93 -4.04 -0.02 3.30 16 11 C 0.07 1.23 2.80 -26.79 -0.07 1.16 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.08 1.18 5.92 -3.74 -0.02 1.16 16 14 N -0.61 -7.41 3.03 -173.62 -0.53 -7.93 16 15 C 0.56 7.21 7.33 -12.31 -0.09 7.12 16 16 O -0.53 -8.61 16.36 5.32 0.09 -8.53 16 17 C -0.10 -0.98 5.16 -104.95 -0.54 -1.53 16 18 C -0.08 -0.67 9.51 -39.55 -0.38 -1.05 16 19 C -0.09 -0.61 9.77 -39.59 -0.39 -1.00 16 20 C -0.10 -0.77 5.75 -106.78 -0.61 -1.39 16 21 C 0.15 1.04 11.04 -16.97 -0.19 0.85 16 22 N -0.48 -4.15 10.29 -13.14 -0.14 -4.29 16 23 C 0.07 0.53 11.07 -17.96 -0.20 0.33 16 24 C -0.15 -0.97 9.88 -39.35 -0.39 -1.36 16 25 C -0.03 -0.25 5.74 -106.83 -0.61 -0.87 16 26 C -0.08 -0.64 7.19 -38.78 -0.28 -0.92 16 27 C 0.06 0.59 5.00 -3.53 -0.02 0.57 16 28 C 0.05 0.55 6.98 37.31 0.26 0.81 16 29 O -0.36 -6.05 10.33 -35.23 -0.36 -6.41 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.70 7.67 -40.82 -0.31 10.39 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.52 7.06 -51.93 -0.37 1.15 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.14 1.20 8.04 -52.48 -0.42 0.78 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.17 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.14 0.95 6.41 -52.49 -0.34 0.61 16 42 H 0.08 0.67 8.01 -51.93 -0.42 0.26 16 43 H 0.10 0.76 4.95 -51.93 -0.26 0.50 16 44 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -35.82 373.42 -9.63 -45.45 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.88 Total: 5.87 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.80 Total: -0.28 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.27 Total: -59.34 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.28 Total: -14.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.82 -9.63 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484693079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.814 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds