Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99968 * 2 1 4 4 H 1.48505 * 109.46938 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47234 * 29.99666 * 3 2 1 6 6 H 1.48503 * 109.47380 * 149.99898 * 3 2 1 7 7 C 1.38813 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99537 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46698 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51475 * 304.89955 * 11 10 9 13 13 C 1.52882 * 109.62314 * 184.90453 * 11 10 9 14 14 N 1.47156 * 108.60486 * 187.89883 * 13 11 10 15 15 C 1.34773 * 120.97662 * 230.49940 * 14 13 11 16 16 O 1.21550 * 120.00627 * 5.50454 * 15 14 13 17 17 C 1.47888 * 119.99848 * 185.50361 * 15 14 13 18 18 C 1.40592 * 119.73351 * 219.22352 * 17 15 14 19 19 C 1.35852 * 120.95791 * 180.02562 * 18 17 15 20 20 C 1.40493 * 119.87504 * 359.95829 * 19 18 17 21 21 C 1.40485 * 121.83865 * 180.02562 * 20 19 18 22 22 N 1.31210 * 119.94521 * 180.02562 * 21 20 19 23 23 C 1.32555 * 122.79714 * 0.02562 * 22 21 20 24 24 C 1.36223 * 121.85156 * 359.97281 * 23 22 21 25 25 C 1.40758 * 118.67434 * 0.02736 * 24 23 22 26 26 C 1.38535 * 119.73083 * 39.24271 * 17 15 14 27 27 C 1.47150 * 118.03619 * 50.23247 * 14 13 11 28 28 C 1.53295 * 108.38046 * 309.71208 * 27 14 13 29 29 O 1.42954 * 109.22712 * 52.30641 * 28 27 14 30 30 H 0.96992 * 120.00311 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46827 * 60.00019 * 10 9 7 33 33 H 1.09001 * 109.46921 * 299.99913 * 10 9 7 34 34 H 1.09002 * 109.61587 * 68.08005 * 13 11 10 35 35 H 1.09001 * 109.52290 * 307.66116 * 13 11 10 36 36 H 1.08005 * 119.52187 * 359.97438 * 18 17 15 37 37 H 1.08000 * 120.06202 * 179.97438 * 19 18 17 38 38 H 1.08008 * 120.03008 * 0.09073 * 21 20 19 39 39 H 1.08000 * 119.07560 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.66252 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.35907 * 0.02615 * 26 17 15 42 42 H 1.08991 * 109.68319 * 69.43718 * 27 14 13 43 43 H 1.09003 * 109.67805 * 189.98870 * 27 14 13 44 44 H 1.09009 * 109.51084 * 172.23354 * 28 27 14 45 45 H 1.09003 * 109.51460 * 292.37472 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3808 -4.7143 0.8440 13 6 1.8208 -6.1423 0.1243 14 7 0.8687 -7.2478 -0.0679 15 6 0.8008 -8.2657 0.8127 16 8 1.4596 -8.2313 1.8336 17 6 -0.0755 -9.4247 0.5370 18 6 -0.8022 -10.0146 1.5861 19 6 -1.6140 -11.0804 1.3610 20 6 -1.7353 -11.6061 0.0638 21 6 -2.5630 -12.7063 -0.2156 22 7 -2.6481 -13.1674 -1.4411 23 6 -1.9782 -12.6385 -2.4553 24 6 -1.1494 -11.5702 -2.2904 25 6 -1.0058 -11.0191 -1.0031 26 6 -0.1733 -9.9206 -0.7528 27 6 -0.0110 -7.2059 -1.2467 28 6 -0.6823 -5.8288 -1.3002 29 8 0.3202 -4.8129 -1.2199 30 1 -0.4850 0.8399 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8895 34 1 2.2726 -6.2147 1.1137 35 1 2.5976 -6.1899 -0.6389 36 1 -0.7131 -9.6152 2.5856 37 1 -2.1653 -11.5225 2.1777 38 1 -3.1297 -13.1716 0.5775 39 1 -2.0929 -13.0667 -3.4402 40 1 -0.6130 -11.1542 -3.1305 41 1 0.3868 -9.4657 -1.5564 42 1 0.5782 -7.3624 -2.1502 43 1 -0.7717 -7.9823 -1.1648 44 1 -1.2298 -5.7267 -2.2373 45 1 -1.3718 -5.7270 -0.4621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484693079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = -18.203604 kcal Electronic energy + Delta-G solvation = -28707.652910 eV Core-core repulsion = 24689.951198 eV Total energy + Delta-G solvation = -4017.701712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18380 -41.27309 -39.68822 -38.03867 -36.72750 -35.91175 -34.17406 -33.89145 -32.59973 -31.78565 -30.69243 -29.43020 -27.51795 -25.83701 -25.13640 -24.65622 -23.93378 -23.28373 -22.39893 -20.98809 -19.29846 -19.05820 -18.57843 -18.20937 -17.66789 -17.27299 -17.04407 -16.63479 -16.57828 -16.12909 -15.86855 -15.76558 -15.41188 -15.24422 -15.04615 -14.76492 -14.62636 -14.48012 -14.35844 -14.00422 -13.76801 -13.58196 -13.45509 -13.20177 -12.86997 -12.78154 -12.67380 -12.30100 -12.13583 -12.07500 -11.88900 -11.72182 -11.30890 -11.26638 -11.05843 -10.97028 -10.49801 -10.20868 -9.73001 -9.10684 -9.02171 -7.94837 -5.24601 -0.84114 -0.33559 0.79527 1.33437 1.47447 1.50062 1.58117 1.60285 2.10748 2.55924 2.70309 3.01617 3.13597 3.39094 3.46849 3.50475 3.53683 3.73071 3.78412 3.83874 3.88857 3.96073 3.98211 4.06404 4.11102 4.26322 4.31413 4.38859 4.46219 4.54885 4.60184 4.61718 4.69509 4.72785 4.78535 4.90974 4.92601 5.03276 5.06347 5.12225 5.18075 5.25456 5.48063 5.57885 5.70639 6.09827 6.18588 6.26422 6.82760 6.98229 7.32538 8.06040 8.30552 9.28938 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026081 B = 0.002083 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.336243 B =13439.783706 C =13850.153753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.087 3.913 12 H 0.045 0.955 13 C 0.095 3.905 14 N -0.605 5.605 15 C 0.556 3.444 16 O -0.571 6.571 17 C -0.115 4.115 18 C -0.095 4.095 19 C -0.074 4.074 20 C -0.110 4.110 21 C 0.143 3.857 22 N -0.508 5.508 23 C 0.064 3.936 24 C -0.144 4.144 25 C -0.045 4.045 26 C -0.068 4.068 27 C 0.068 3.932 28 C 0.037 3.963 29 O -0.385 6.385 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.160 0.840 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.130 0.870 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -29.970 -4.400 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.034 3.966 11 C 0.028 3.972 12 H 0.063 0.937 13 C -0.028 4.028 14 N -0.338 5.338 15 C 0.347 3.653 16 O -0.451 6.451 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.028 4.028 22 N -0.217 5.217 23 C -0.078 4.078 24 C -0.164 4.164 25 C -0.050 4.050 26 C -0.086 4.086 27 C -0.054 4.054 28 C -0.040 4.040 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.188 0.812 38 H 0.209 0.791 39 H 0.193 0.807 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.055 -30.431 -4.351 31.153 hybrid contribution 0.530 1.888 0.570 2.042 sum -4.526 -28.542 -3.780 29.145 Atomic orbital electron populations 1.69837 1.06737 1.26096 1.59415 1.25638 0.96467 1.01317 1.03613 0.85075 0.77674 0.79113 0.77483 1.21280 1.22193 1.19253 1.19671 0.91627 0.85168 1.41347 0.90280 1.42431 1.05651 1.00904 1.89402 1.20766 0.93030 0.83776 0.99074 1.22381 0.93451 0.94320 0.87021 0.93742 1.22082 0.91834 0.84390 1.04536 1.48133 1.38320 1.21766 1.25531 1.18808 0.81654 0.82792 0.82091 1.90781 1.46778 1.80243 1.27292 1.19865 0.99636 0.96819 0.95624 1.20943 0.95607 0.96218 0.98632 1.21190 0.97290 0.94624 0.96222 1.19400 0.98981 0.98156 0.94656 1.23711 0.93646 0.90964 0.94473 1.67455 1.22277 1.30952 1.00969 1.22644 0.92799 0.93748 0.98639 1.22254 1.00014 0.97416 0.96685 1.18309 0.96650 0.95524 0.94550 1.21708 0.96695 0.94680 0.95541 1.23038 0.94973 0.99292 0.88080 1.23228 0.90132 0.86538 1.04060 1.88107 1.50505 1.54272 1.37454 0.94005 0.79410 0.93810 0.94795 0.88767 0.88553 0.85075 0.81164 0.79143 0.80748 0.81501 0.82273 0.87634 0.86223 0.85176 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -39.29 5.55 -343.44 -1.91 -41.20 16 10 C 0.16 6.58 5.93 86.38 0.51 7.10 16 11 C 0.09 2.97 2.80 30.55 0.09 3.06 16 12 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 13 C 0.09 2.61 5.92 86.21 0.51 3.12 16 14 N -0.61 -14.32 3.03 -821.50 -2.49 -16.80 16 15 C 0.56 14.33 7.33 86.80 0.64 14.97 16 16 O -0.57 -19.21 16.36 -3.87 -0.06 -19.27 16 17 C -0.12 -2.22 5.16 -20.08 -0.10 -2.32 16 18 C -0.10 -1.64 9.51 22.29 0.21 -1.43 16 19 C -0.07 -0.89 9.77 22.27 0.22 -0.67 16 20 C -0.11 -1.46 5.75 -21.26 -0.12 -1.59 16 21 C 0.14 1.70 11.04 85.33 0.94 2.65 16 22 N -0.51 -7.58 10.29 -195.50 -2.01 -9.59 16 23 C 0.06 0.74 11.07 84.11 0.93 1.67 16 24 C -0.14 -1.48 9.88 22.42 0.22 -1.26 16 25 C -0.05 -0.62 5.74 -21.29 -0.12 -0.74 16 26 C -0.07 -0.96 7.19 22.79 0.16 -0.80 16 27 C 0.07 1.16 5.00 86.35 0.43 1.59 16 28 C 0.04 0.86 6.98 72.08 0.50 1.37 16 29 O -0.38 -12.97 10.33 -148.98 -1.54 -14.51 16 30 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.37 21.39 7.67 -92.71 -0.71 20.68 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 2.80 7.06 -2.39 -0.02 2.78 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.13 2.35 8.04 -2.91 -0.02 2.33 16 37 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.16 1.60 6.41 -2.91 -0.02 1.58 16 42 H 0.11 1.37 8.01 -2.39 -0.02 1.35 16 43 H 0.12 1.54 4.95 -2.39 -0.01 1.53 16 44 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.08 373.42 0.95 -78.13 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.32 Total: 25.62 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.33 Total: 9.31 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -6.12 Total: -128.14 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.60 Total: -33.78 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.08 0.95 -78.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484693079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.929 kcal (2) G-P(sol) polarization free energy of solvation -79.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds