Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99718 * 2 1 4 4 H 1.48502 * 109.46874 * 239.99427 * 3 2 1 5 5 H 1.48496 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46852 * 120.00027 * 3 2 1 7 7 C 1.38814 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99677 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46835 * 179.97438 * 10 9 7 12 12 C 1.53785 * 113.61113 * 175.00299 * 11 10 9 13 13 C 1.53779 * 87.07848 * 139.98124 * 12 11 10 14 14 N 1.46505 * 113.61212 * 89.11849 * 13 12 11 15 15 C 1.34777 * 119.99722 * 156.52957 * 14 13 12 16 16 O 1.21493 * 120.00329 * 359.97438 * 15 14 13 17 17 C 1.48351 * 119.99570 * 179.72005 * 15 14 13 18 18 C 1.41917 * 126.83999 * 180.27151 * 17 15 14 19 19 C 1.36712 * 103.81398 * 180.02562 * 18 17 15 20 20 C 1.47856 * 126.82020 * 179.97438 * 19 18 17 21 21 C 1.39563 * 120.13950 * 359.72912 * 20 19 18 22 22 C 1.37960 * 119.85342 * 179.72024 * 21 20 19 23 23 C 1.38361 * 120.14346 * 0.55135 * 22 21 20 24 24 C 1.38352 * 120.28776 * 359.72536 * 23 22 21 25 25 C 1.37969 * 120.14455 * 359.97438 * 24 23 22 26 26 O 1.34465 * 106.36569 * 359.97438 * 19 18 17 27 27 N 1.20880 * 111.73990 * 359.71186 * 26 19 18 28 28 C 1.53777 * 87.17562 * 334.52617 * 13 12 11 29 29 H 0.97003 * 119.99943 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99886 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47042 * 60.00473 * 10 9 7 32 32 H 1.08993 * 109.47634 * 300.00101 * 10 9 7 33 33 H 1.08998 * 112.84935 * 43.80557 * 11 10 9 34 34 H 1.09003 * 113.61547 * 25.43031 * 12 11 10 35 35 H 1.08998 * 113.68676 * 254.54052 * 12 11 10 36 36 H 1.09000 * 113.61450 * 219.92894 * 13 12 11 37 37 H 0.97000 * 119.99795 * 336.52073 * 14 13 12 38 38 H 1.08000 * 128.09600 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.07249 * 359.97438 * 21 20 19 40 40 H 1.07994 * 119.93025 * 180.27417 * 22 21 20 41 41 H 1.08001 * 119.85744 * 179.69789 * 23 22 21 42 42 H 1.07996 * 119.92877 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.07340 * 180.02562 * 25 24 23 44 44 H 1.08991 * 113.61540 * 140.02715 * 28 13 12 45 45 H 1.09011 * 113.61107 * 270.92689 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.7304 -6.2001 -0.1215 13 6 0.7052 -6.6996 0.9101 14 7 -0.5384 -7.1906 0.3112 15 6 -1.3107 -8.0663 0.9844 16 8 -0.9754 -8.4489 2.0877 17 6 -2.5731 -8.5588 0.3806 18 6 -3.4934 -9.4716 0.9584 19 6 -4.4714 -9.5929 0.0109 20 6 -5.6872 -10.4300 0.0945 21 6 -5.9251 -11.2090 1.2278 22 6 -7.0644 -11.9835 1.3021 23 6 -7.9644 -11.9979 0.2513 24 6 -7.7316 -11.2324 -0.8774 25 6 -6.5992 -10.4488 -0.9616 26 8 -4.1081 -8.7997 -1.0123 27 7 -3.0637 -8.2329 -0.7905 28 6 0.6165 -5.2486 1.4115 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6847 -3.7145 0.8906 32 1 2.6848 -3.7146 -0.8894 33 1 0.2375 -4.6705 -0.6938 34 1 2.7589 -6.2220 0.2390 35 1 1.6171 -6.6553 -1.1054 36 1 1.1236 -7.3900 1.6425 37 1 -0.8060 -6.8854 -0.5698 38 1 -3.4349 -9.9569 1.9214 39 1 -5.2209 -11.2023 2.0466 40 1 -7.2519 -12.5833 2.1803 41 1 -8.8524 -12.6097 0.3123 42 1 -8.4382 -11.2477 -1.6940 43 1 -6.4189 -9.8514 -1.8431 44 1 -0.3963 -4.9351 1.6641 45 1 1.3410 -5.0108 2.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485098930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 85.522592 kcal Electronic energy + Delta-G solvation = -27307.561513 eV Core-core repulsion = 23294.357707 eV Total energy + Delta-G solvation = -4013.203807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.38809 -40.25671 -39.60190 -38.37312 -34.59943 -34.48009 -33.79724 -32.95145 -31.51317 -30.82493 -29.99387 -27.06839 -25.53438 -25.29169 -24.23900 -23.48421 -22.87324 -22.33401 -21.42523 -20.53105 -19.15666 -18.74954 -18.14396 -17.25344 -16.98481 -16.82858 -16.02402 -15.77201 -15.39211 -15.08597 -14.90782 -14.61691 -14.29958 -14.04260 -13.98423 -13.81129 -13.64086 -13.49563 -13.33782 -12.79254 -12.40410 -12.19982 -12.11847 -11.82094 -11.68892 -11.59156 -11.03461 -10.83856 -10.80107 -10.77251 -10.60625 -10.38146 -10.34658 -10.10741 -9.83870 -9.60592 -9.52762 -9.12967 -8.87675 -8.82260 -6.87876 -5.73201 -3.01585 0.09355 0.83846 0.94835 1.66068 2.39480 2.70439 2.92380 3.28315 3.46063 3.50045 3.51411 3.61150 3.97512 4.33313 4.41151 4.51581 4.59613 4.60300 4.62612 4.74359 4.79123 4.81745 4.91012 5.06705 5.08863 5.11843 5.28805 5.44061 5.47937 5.60451 5.66238 5.84030 5.86208 5.86808 5.92010 5.94344 5.98111 6.10482 6.20339 6.27523 6.34050 6.41873 6.57546 6.79824 6.94011 7.20763 7.62706 7.72072 7.89226 8.45868 9.56654 10.16015 10.50390 11.49667 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.001728 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.421435 B =16195.504340 C =17136.378409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.114 3.886 14 N -0.691 5.691 15 C 0.602 3.398 16 O -0.522 6.522 17 C -0.020 4.020 18 C -0.165 4.165 19 C 0.009 3.991 20 C -0.024 4.024 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.092 4.092 26 O 0.132 5.868 27 N -0.325 5.325 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.408 0.592 38 H 0.184 0.816 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.069 0.931 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -29.291 -0.283 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 C -0.175 4.175 13 C 0.009 3.991 14 N -0.342 5.342 15 C 0.385 3.615 16 O -0.396 6.396 17 C -0.179 4.179 18 C -0.188 4.188 19 C -0.053 4.053 20 C -0.025 4.025 21 C -0.107 4.107 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.136 4.136 25 C -0.111 4.111 26 O 0.054 5.946 27 N -0.023 5.023 28 C -0.176 4.176 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.244 0.756 38 H 0.201 0.799 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.897 -28.573 -0.420 31.776 hybrid contribution -0.109 0.812 0.202 0.844 sum -14.006 -27.761 -0.218 31.095 Atomic orbital electron populations 1.69656 1.05113 1.25699 1.57822 1.24746 0.95525 0.97690 1.03126 0.86259 0.78499 0.83555 0.77826 1.21292 1.21711 1.21291 1.19206 0.91004 0.84287 1.42622 0.91271 1.42341 1.05838 0.99978 1.89418 1.20632 0.92961 0.85183 0.97707 1.22827 0.99176 0.94262 0.97008 1.23311 0.98815 0.96582 0.98805 1.22056 0.83838 0.96326 0.96876 1.45555 1.23031 1.44198 1.21384 1.16804 0.81130 0.78972 0.84602 1.90803 1.71585 1.58340 1.18867 1.23391 0.99757 1.01654 0.93066 1.22583 0.92682 1.01270 1.02215 1.22467 0.97362 0.97116 0.88389 1.17582 0.91091 0.97361 0.96462 1.21160 0.97818 0.95223 0.96513 1.21107 0.93992 0.99208 0.99240 1.21386 0.99235 0.98300 0.93444 1.21149 0.97296 0.96640 0.98511 1.21343 0.93512 0.98335 0.97879 1.84869 1.28955 1.43029 1.37771 1.74181 0.96530 1.14429 1.17204 1.23467 1.02666 0.93652 0.97836 0.93514 0.78329 0.96162 0.96359 0.89373 0.88384 0.91122 0.87939 0.75597 0.79866 0.85050 0.85092 0.85477 0.85177 0.84815 0.91218 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.96 5.60 -59.91 -0.34 -19.29 16 10 C 0.16 3.29 6.10 -4.04 -0.02 3.27 16 11 C -0.11 -1.82 3.65 -89.66 -0.33 -2.15 16 12 C -0.14 -1.70 7.38 -25.92 -0.19 -1.89 16 13 C 0.11 1.49 4.30 -67.12 -0.29 1.20 16 14 N -0.69 -8.95 5.26 -53.80 -0.28 -9.24 16 15 C 0.60 8.42 7.85 -12.10 -0.09 8.33 16 16 O -0.52 -8.52 16.57 5.37 0.09 -8.43 16 17 C -0.02 -0.25 7.18 -82.62 -0.59 -0.85 16 18 C -0.17 -1.67 10.34 -38.73 -0.40 -2.07 16 19 C 0.01 0.09 7.15 -36.20 -0.26 -0.17 16 20 C -0.02 -0.18 5.87 -104.98 -0.62 -0.79 16 21 C -0.09 -0.53 9.58 -39.19 -0.38 -0.91 16 22 C -0.12 -0.57 10.03 -39.64 -0.40 -0.97 16 23 C -0.11 -0.48 10.04 -39.49 -0.40 -0.88 16 24 C -0.12 -0.59 10.03 -39.64 -0.40 -0.99 16 25 C -0.09 -0.59 9.73 -39.19 -0.38 -0.97 16 26 O 0.13 1.40 11.01 16.04 0.18 1.57 16 27 N -0.32 -3.96 11.82 33.35 0.39 -3.57 16 28 C -0.14 -2.11 7.45 -25.78 -0.19 -2.30 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 31 H 0.02 0.41 7.85 -51.93 -0.41 0.01 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.36 7.50 -51.93 -0.39 0.97 16 37 H 0.41 4.91 8.46 -40.82 -0.35 4.57 16 38 H 0.18 1.47 7.46 -52.49 -0.39 1.08 16 39 H 0.13 0.61 7.15 -52.49 -0.38 0.23 16 40 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.13 0.72 7.96 -52.49 -0.42 0.30 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.43 7.90 -51.92 -0.41 1.02 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -34.10 389.29 -9.55 -43.65 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.98 Total: 9.46 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -5.18 Total: -9.69 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.50 Total: -60.22 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.27 Total: -6.85 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.10 -9.55 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485098930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.172 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds