Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.08997 * 112.85267 * 45.32803 * 11 10 9 13 13 C 1.53781 * 113.61494 * 176.52844 * 11 10 9 14 14 C 1.53781 * 87.08219 * 139.98040 * 13 11 10 15 15 H 1.09005 * 113.61793 * 219.93491 * 14 13 11 16 16 N 1.46498 * 113.61687 * 89.11614 * 14 13 11 17 17 C 1.34775 * 120.00345 * 155.00344 * 16 14 13 18 18 O 1.21550 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.47928 * 120.00231 * 180.02562 * 17 16 14 20 20 C 1.38258 * 119.24030 * 179.72513 * 19 17 16 21 21 C 1.40697 * 118.65019 * 179.79903 * 20 19 17 22 22 C 1.40229 * 122.05681 * 180.23474 * 21 20 19 23 23 C 1.36320 * 119.48257 * 180.23282 * 22 21 20 24 24 C 1.39252 * 120.93940 * 359.97438 * 23 22 21 25 25 C 1.36363 * 121.06118 * 0.04572 * 24 23 22 26 26 C 1.40041 * 119.59064 * 359.95707 * 25 24 23 27 27 C 1.41338 * 121.85541 * 180.02562 * 26 25 24 28 28 O 1.35502 * 119.95367 * 359.97258 * 27 26 25 29 29 N 1.31386 * 120.09829 * 179.97438 * 27 26 25 30 30 C 1.53784 * 113.61355 * 274.13660 * 11 10 9 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 113.60987 * 254.52402 * 13 11 10 36 36 H 1.08999 * 113.61627 * 25.42900 * 13 11 10 37 37 H 0.97003 * 119.99886 * 334.99585 * 16 14 13 38 38 H 1.07999 * 120.67707 * 359.97438 * 20 19 17 39 39 H 1.08001 * 120.26113 * 0.25211 * 22 21 20 40 40 H 1.07994 * 119.53262 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.46665 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.20213 * 179.97438 * 25 24 23 43 43 H 0.96697 * 114.00047 * 270.02408 * 28 27 26 44 44 H 1.09004 * 113.61160 * 334.56145 * 30 11 10 45 45 H 1.08999 * 113.62074 * 105.47017 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.2522 -4.6861 -0.7026 13 6 1.7324 -6.2023 -0.0654 14 6 0.6856 -6.6791 0.9553 15 1 1.0883 -7.3530 1.7116 16 7 -0.5453 -7.1835 0.3415 17 6 -1.3159 -8.0680 1.0052 18 8 -0.9893 -8.4475 2.1128 19 6 -2.5585 -8.5777 0.3852 20 6 -3.3341 -9.4890 1.0776 21 6 -4.5156 -9.9624 0.4780 22 6 -5.3577 -10.8832 1.1179 23 6 -6.4876 -11.3106 0.4862 24 6 -6.8172 -10.8452 -0.7842 25 6 -6.0200 -9.9500 -1.4342 26 6 -4.8511 -9.4887 -0.8162 27 6 -3.9907 -8.5608 -1.4458 28 8 -4.2883 -8.0933 -2.6823 29 7 -2.9028 -8.1508 -0.8338 30 6 0.5855 -5.2147 1.4199 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 1.6386 -6.6781 -1.0415 36 1 2.7530 -6.2159 0.3171 37 1 -0.8058 -6.8809 -0.5425 38 1 -3.0406 -9.8283 2.0600 39 1 -5.1131 -11.2508 2.1035 40 1 -7.1364 -12.0201 0.9781 41 1 -7.7184 -11.1994 -1.2625 42 1 -6.2887 -9.5986 -2.4195 43 1 -3.9208 -8.6239 -3.4023 44 1 1.2921 -4.9579 2.2092 45 1 -0.4326 -4.8945 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485686028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = 14.092517 kcal Electronic energy + Delta-G solvation = -27921.248738 eV Core-core repulsion = 23904.947491 eV Total energy + Delta-G solvation = -4016.301247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53250 -40.09369 -38.46660 -38.31218 -36.85149 -34.50808 -33.22048 -32.66686 -31.65832 -30.77744 -29.90388 -26.90384 -25.44323 -25.12542 -24.47488 -23.26840 -22.60566 -21.67518 -21.23010 -19.27959 -18.99250 -18.44947 -18.07065 -16.98956 -16.93204 -16.33104 -15.89865 -15.74288 -15.09896 -14.89136 -14.77271 -14.55413 -14.38654 -14.01100 -13.84100 -13.80741 -13.45229 -13.28051 -12.75821 -12.46623 -12.38778 -12.25573 -12.16787 -12.06865 -11.71915 -11.59547 -10.98764 -10.79400 -10.65148 -10.52950 -10.35312 -10.28280 -10.03487 -9.82020 -9.74354 -9.64962 -9.54912 -8.98274 -8.79150 -8.47099 -6.84130 -5.70128 -2.98269 -0.27249 0.20579 1.32272 2.05393 2.88264 2.97894 3.09988 3.47470 3.52146 3.54257 3.59720 4.01662 4.09437 4.26207 4.35757 4.53917 4.62986 4.67322 4.73537 4.78777 4.88281 4.94476 5.18024 5.20132 5.20845 5.25678 5.42082 5.43584 5.63681 5.76962 5.84040 5.87449 5.92458 5.95093 5.99987 6.08432 6.18073 6.25489 6.30798 6.37416 6.49157 6.67237 6.85054 6.99801 7.00637 7.25792 7.56044 7.75374 8.10099 8.49050 9.59763 10.19794 10.54178 11.52853 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002031 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.510482 B =13784.819977 C =14688.248535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.137 4.137 14 C 0.113 3.887 15 H 0.101 0.899 16 N -0.686 5.686 17 C 0.574 3.426 18 O -0.535 6.535 19 C 0.081 3.919 20 C -0.092 4.092 21 C -0.023 4.023 22 C -0.103 4.103 23 C -0.096 4.096 24 C -0.114 4.114 25 C -0.082 4.082 26 C -0.108 4.108 27 C 0.357 3.643 28 O -0.470 6.470 29 N -0.484 5.484 30 C -0.138 4.138 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.405 0.595 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -29.330 -2.844 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.107 0.893 13 C -0.176 4.176 14 C 0.008 3.992 15 H 0.119 0.881 16 N -0.336 5.336 17 C 0.359 3.641 18 O -0.412 6.412 19 C -0.044 4.044 20 C -0.114 4.114 21 C -0.028 4.028 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.102 4.102 26 C -0.111 4.111 27 C 0.161 3.839 28 O -0.278 6.278 29 N -0.205 5.205 30 C -0.176 4.176 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.264 0.736 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.343 -28.422 -2.087 31.057 hybrid contribution -0.398 0.404 -0.448 0.723 sum -12.741 -28.018 -2.535 30.883 Atomic orbital electron populations 1.69670 1.05090 1.25535 1.57973 1.24751 0.95535 0.97687 1.03266 0.86184 0.78619 0.83913 0.77459 1.21788 1.21824 1.20807 1.19249 0.91009 0.84288 1.42332 0.91245 1.42355 1.05877 0.99989 1.89354 1.20632 0.92993 0.85231 0.97632 1.22761 0.99051 0.94220 0.97205 0.89347 1.23302 0.98598 0.96693 0.98958 1.22066 0.84490 0.95988 0.96700 0.88103 1.45535 1.23363 1.43401 1.21323 1.17746 0.82417 0.79163 0.84815 1.90793 1.71940 1.59458 1.19056 1.20556 0.96453 0.97136 0.90294 1.22213 0.92544 0.95595 1.01001 1.18064 0.94932 0.96762 0.93007 1.21060 0.94389 0.96360 1.00324 1.21074 0.96576 0.98960 0.94954 1.21046 0.99891 0.97110 0.95129 1.20983 0.92713 0.96086 1.00407 1.19062 0.97956 0.98387 0.95724 1.19097 0.88266 0.89087 0.87408 1.84764 1.75044 1.55548 1.12416 1.66830 1.18186 1.25012 1.10484 1.23438 1.02489 0.93850 0.97854 0.93587 0.78303 0.96414 0.96224 0.91185 0.88603 0.75072 0.82509 0.84383 0.85083 0.85141 0.84311 0.73630 0.88991 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.20 5.60 -59.91 -0.34 -19.53 16 10 C 0.16 3.35 6.08 -4.04 -0.02 3.32 16 11 C -0.11 -1.87 3.62 -89.81 -0.33 -2.20 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.14 -1.76 7.39 -25.92 -0.19 -1.96 16 14 C 0.11 1.54 4.33 -67.02 -0.29 1.25 16 15 H 0.10 1.39 7.46 -51.93 -0.39 1.01 16 16 N -0.69 -9.28 5.25 -53.84 -0.28 -9.56 16 17 C 0.57 8.21 7.80 -12.29 -0.10 8.11 16 18 O -0.54 -8.81 15.86 5.32 0.08 -8.73 16 19 C 0.08 1.02 6.73 -83.09 -0.56 0.46 16 20 C -0.09 -0.98 9.41 -38.65 -0.36 -1.34 16 21 C -0.02 -0.21 5.74 -106.84 -0.61 -0.82 16 22 C -0.10 -0.68 9.81 -39.52 -0.39 -1.07 16 23 C -0.10 -0.50 9.95 -39.90 -0.40 -0.90 16 24 C -0.11 -0.59 9.95 -39.88 -0.40 -0.99 16 25 C -0.08 -0.54 9.58 -39.58 -0.38 -0.92 16 26 C -0.11 -0.98 5.76 -106.67 -0.61 -1.59 16 27 C 0.36 3.66 7.80 -16.56 -0.13 3.53 16 28 O -0.47 -3.86 12.83 -18.20 -0.23 -4.10 16 29 N -0.48 -5.92 9.47 -9.60 -0.09 -6.01 16 30 C -0.14 -2.19 7.44 -25.82 -0.19 -2.38 16 31 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.41 5.32 7.99 -40.82 -0.33 4.99 16 38 H 0.16 1.49 7.59 -52.49 -0.40 1.09 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.14 0.66 7.65 -52.49 -0.40 0.26 16 43 H 0.40 1.19 9.06 45.56 0.41 1.60 16 44 H 0.09 1.46 7.92 -51.93 -0.41 1.05 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -36.23 384.04 -9.74 -45.96 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.16 Total: 11.69 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -5.21 Total: -5.09 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.02 Total: -63.50 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.15 Total: -12.83 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.23 -9.74 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485686028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.057 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds