Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.08997 * 112.85267 * 45.32803 * 11 10 9 13 13 C 1.53781 * 113.61494 * 176.52844 * 11 10 9 14 14 C 1.53781 * 87.08219 * 139.98040 * 13 11 10 15 15 H 1.09005 * 113.61793 * 219.93491 * 14 13 11 16 16 N 1.46498 * 113.61687 * 89.11614 * 14 13 11 17 17 C 1.34775 * 120.00345 * 155.00344 * 16 14 13 18 18 O 1.21550 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.47928 * 120.00231 * 180.02562 * 17 16 14 20 20 C 1.38258 * 119.24030 * 179.72513 * 19 17 16 21 21 C 1.40697 * 118.65019 * 179.79903 * 20 19 17 22 22 C 1.40229 * 122.05681 * 180.23474 * 21 20 19 23 23 C 1.36320 * 119.48257 * 180.23282 * 22 21 20 24 24 C 1.39252 * 120.93940 * 359.97438 * 23 22 21 25 25 C 1.36363 * 121.06118 * 0.04572 * 24 23 22 26 26 C 1.40041 * 119.59064 * 359.95707 * 25 24 23 27 27 C 1.41338 * 121.85541 * 180.02562 * 26 25 24 28 28 O 1.35502 * 119.95367 * 359.97258 * 27 26 25 29 29 N 1.31386 * 120.09829 * 179.97438 * 27 26 25 30 30 C 1.53784 * 113.61355 * 274.13660 * 11 10 9 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 113.60987 * 254.52402 * 13 11 10 36 36 H 1.08999 * 113.61627 * 25.42900 * 13 11 10 37 37 H 0.97003 * 119.99886 * 334.99585 * 16 14 13 38 38 H 1.07999 * 120.67707 * 359.97438 * 20 19 17 39 39 H 1.08001 * 120.26113 * 0.25211 * 22 21 20 40 40 H 1.07994 * 119.53262 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.46665 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.20213 * 179.97438 * 25 24 23 43 43 H 0.96697 * 114.00047 * 270.02408 * 28 27 26 44 44 H 1.09004 * 113.61160 * 334.56145 * 30 11 10 45 45 H 1.08999 * 113.62074 * 105.47017 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.2522 -4.6861 -0.7026 13 6 1.7324 -6.2023 -0.0654 14 6 0.6856 -6.6791 0.9553 15 1 1.0883 -7.3530 1.7116 16 7 -0.5453 -7.1835 0.3415 17 6 -1.3159 -8.0680 1.0052 18 8 -0.9893 -8.4475 2.1128 19 6 -2.5585 -8.5777 0.3852 20 6 -3.3341 -9.4890 1.0776 21 6 -4.5156 -9.9624 0.4780 22 6 -5.3577 -10.8832 1.1179 23 6 -6.4876 -11.3106 0.4862 24 6 -6.8172 -10.8452 -0.7842 25 6 -6.0200 -9.9500 -1.4342 26 6 -4.8511 -9.4887 -0.8162 27 6 -3.9907 -8.5608 -1.4458 28 8 -4.2883 -8.0933 -2.6823 29 7 -2.9028 -8.1508 -0.8338 30 6 0.5855 -5.2147 1.4199 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 1.6386 -6.6781 -1.0415 36 1 2.7530 -6.2159 0.3171 37 1 -0.8058 -6.8809 -0.5425 38 1 -3.0406 -9.8283 2.0600 39 1 -5.1131 -11.2508 2.1035 40 1 -7.1364 -12.0201 0.9781 41 1 -7.7184 -11.1994 -1.2625 42 1 -6.2887 -9.5986 -2.4195 43 1 -3.9208 -8.6239 -3.4023 44 1 1.2921 -4.9579 2.2092 45 1 -0.4326 -4.8945 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485686028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -13.782964 kcal Electronic energy + Delta-G solvation = -27922.457509 eV Core-core repulsion = 23904.947491 eV Total energy + Delta-G solvation = -4017.510019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24337 -41.17483 -39.58505 -38.93686 -37.60901 -36.36016 -34.52840 -33.34128 -32.84285 -32.16611 -30.63828 -28.56560 -26.65936 -26.13076 -25.08812 -24.99853 -23.20387 -23.03696 -22.36587 -20.35192 -19.99540 -19.25983 -19.02365 -18.68553 -17.66799 -17.17644 -16.86561 -16.66895 -16.49636 -16.09901 -15.94622 -15.63609 -15.35669 -15.10503 -15.05419 -14.85992 -14.59614 -14.38538 -14.15151 -13.72237 -13.42230 -13.15871 -13.05564 -12.90638 -12.88933 -12.81850 -12.71135 -12.18842 -12.18530 -11.93819 -11.83630 -11.53413 -11.38556 -11.17434 -11.16896 -10.87369 -10.60791 -10.24379 -10.09654 -9.11384 -8.98788 -7.95248 -5.24142 -0.93535 -0.42658 0.74260 1.25734 1.45775 1.48399 1.56864 1.94039 2.18540 2.37543 2.55684 2.90771 3.26121 3.37356 3.50011 3.55158 3.58312 3.63627 3.78375 3.90643 3.92963 3.95995 4.22850 4.24517 4.31955 4.37164 4.52788 4.59817 4.63563 4.72780 4.82818 4.85118 4.89454 4.92012 4.96529 4.99023 5.13132 5.24841 5.30773 5.34024 5.36087 5.43485 5.48141 5.62229 5.81457 6.26935 6.27972 6.51663 6.69970 7.03422 7.32458 8.10605 8.32914 9.28583 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002031 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.510482 B =13784.819977 C =14688.248535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.113 4.113 12 H 0.077 0.923 13 C -0.114 4.114 14 C 0.122 3.878 15 H 0.104 0.896 16 N -0.685 5.685 17 C 0.572 3.428 18 O -0.565 6.565 19 C 0.051 3.949 20 C -0.088 4.088 21 C -0.041 4.041 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.103 4.103 25 C -0.092 4.092 26 C -0.118 4.118 27 C 0.353 3.647 28 O -0.477 6.477 29 N -0.511 5.511 30 C -0.141 4.141 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.415 0.585 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.425 0.575 44 H 0.092 0.908 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 -31.361 -3.502 34.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.131 4.131 12 H 0.096 0.904 13 C -0.152 4.152 14 C 0.017 3.983 15 H 0.122 0.878 16 N -0.334 5.334 17 C 0.358 3.642 18 O -0.445 6.445 19 C -0.073 4.073 20 C -0.109 4.109 21 C -0.046 4.046 22 C -0.129 4.129 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.122 4.122 27 C 0.158 3.842 28 O -0.288 6.288 29 N -0.233 5.233 30 C -0.180 4.180 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.252 0.748 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.288 0.712 44 H 0.111 0.889 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.079 -30.492 -2.775 33.295 hybrid contribution -0.314 0.894 -0.289 0.991 sum -13.393 -29.598 -3.064 32.631 Atomic orbital electron populations 1.69842 1.06736 1.26026 1.59723 1.25643 0.96459 1.01354 1.03882 0.85084 0.77656 0.79205 0.77489 1.21254 1.22257 1.19292 1.19693 0.91574 0.85457 1.40923 0.90492 1.42606 1.05558 1.01377 1.89310 1.20824 0.93647 0.84357 0.97702 1.22666 0.98417 0.94704 0.97356 0.90424 1.23224 0.98882 0.93330 0.99761 1.21949 0.84893 0.94457 0.97036 0.87783 1.45537 1.23308 1.43209 1.21337 1.18085 0.82881 0.78742 0.84458 1.90753 1.72882 1.60610 1.20237 1.20310 0.96621 0.99110 0.91296 1.22328 0.92867 0.94806 1.00914 1.18281 0.94997 0.97831 0.93456 1.21348 0.94530 0.95848 1.01212 1.21524 0.95992 0.98445 0.94811 1.21507 1.00206 0.95452 0.94906 1.21242 0.92025 0.96562 1.01308 1.19253 0.98701 0.98331 0.95865 1.19312 0.87973 0.89033 0.87910 1.84714 1.75199 1.56379 1.12487 1.66714 1.19634 1.26295 1.10688 1.23450 1.01122 0.95804 0.97624 0.94081 0.79736 0.95910 0.95758 0.89326 0.86760 0.74775 0.82243 0.82644 0.81859 0.81963 0.82675 0.71228 0.88945 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.00 13.06 21.65 0.28 -61.72 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 3 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.75 -39.83 5.60 -343.46 -1.92 -41.76 16 10 C 0.16 6.60 6.08 86.38 0.53 7.13 16 11 C -0.11 -3.73 3.62 -10.27 -0.04 -3.76 16 12 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 13 C -0.11 -2.77 7.39 31.12 0.23 -2.54 16 14 C 0.12 3.33 4.33 45.58 0.20 3.53 16 15 H 0.10 2.85 7.46 -2.38 -0.02 2.83 16 16 N -0.68 -19.10 5.25 -442.53 -2.32 -21.43 16 17 C 0.57 17.17 7.80 86.81 0.68 17.84 16 18 O -0.57 -19.40 15.86 -3.87 -0.06 -19.47 16 19 C 0.05 1.35 6.73 41.44 0.28 1.63 16 20 C -0.09 -1.93 9.41 22.88 0.22 -1.71 16 21 C -0.04 -0.73 5.74 -21.30 -0.12 -0.85 16 22 C -0.11 -1.25 9.81 22.31 0.22 -1.03 16 23 C -0.09 -0.61 9.95 22.07 0.22 -0.39 16 24 C -0.10 -0.70 9.95 22.08 0.22 -0.48 16 25 C -0.09 -1.00 9.58 22.27 0.21 -0.79 16 26 C -0.12 -2.05 5.76 -21.19 -0.12 -2.18 16 27 C 0.35 7.33 7.80 85.52 0.67 8.00 16 28 O -0.48 -7.67 12.83 -88.03 -1.13 -8.80 16 29 N -0.51 -13.07 9.47 -297.69 -2.82 -15.89 16 30 C -0.14 -4.61 7.44 31.18 0.23 -4.38 16 31 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.37 21.31 7.67 -92.71 -0.71 20.60 16 33 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.02 0.99 7.87 -2.39 -0.02 0.97 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 2.43 8.10 -2.39 -0.02 2.41 16 37 H 0.42 11.11 7.99 -92.71 -0.74 10.37 16 38 H 0.16 3.20 7.59 -2.91 -0.02 3.18 16 39 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 42 H 0.16 1.10 7.65 -2.91 -0.02 1.07 16 43 H 0.43 2.23 9.06 -74.06 -0.67 1.56 16 44 H 0.09 2.98 7.92 -2.38 -0.02 2.96 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -80.09 384.04 -2.09 -82.18 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -1.06 Total: 34.99 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 4.92 Total: 2.25 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -6.78 Total: -140.80 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.19 Total: -28.27 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.09 -2.09 -82.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485686028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.397 kcal (2) G-P(sol) polarization free energy of solvation -80.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds