Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47087 * 270.00438 * 3 2 1 5 5 H 1.48504 * 109.47117 * 30.00253 * 3 2 1 6 6 H 1.48498 * 109.47102 * 150.00619 * 3 2 1 7 7 C 1.38811 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00068 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00141 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46869 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.88764 * 51.12188 * 11 10 9 13 13 C 1.55157 * 110.99877 * 174.99987 * 11 10 9 14 14 C 1.54325 * 102.94019 * 153.57670 * 13 11 10 15 15 N 1.47022 * 107.27170 * 337.80574 * 14 13 11 16 16 C 1.34776 * 125.64546 * 178.90101 * 15 14 13 17 17 O 1.21640 * 119.99527 * 185.32279 * 16 15 14 18 18 C 1.47129 * 120.00395 * 5.33034 * 16 15 14 19 19 C 1.37943 * 120.55574 * 44.26283 * 18 16 15 20 20 N 1.33951 * 122.20758 * 180.31443 * 19 18 16 21 21 H 0.97004 * 118.59928 * 179.71256 * 20 19 18 22 22 C 1.37795 * 122.80371 * 359.42732 * 20 19 18 23 23 C 1.39277 * 120.52495 * 180.28591 * 22 20 19 24 24 C 1.37739 * 119.97403 * 179.97438 * 23 22 20 25 25 C 1.38783 * 120.72243 * 359.97386 * 24 23 22 26 26 C 1.37720 * 120.29685 * 0.02562 * 25 24 23 27 27 C 1.39494 * 119.60360 * 359.97438 * 26 25 24 28 28 C 1.47146 * 120.55406 * 224.00149 * 18 16 15 29 29 O 1.21867 * 121.41005 * 359.95634 * 28 18 16 30 30 C 1.47419 * 108.70103 * 359.17198 * 15 14 13 31 31 H 0.97004 * 119.99971 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99733 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47066 * 60.00347 * 10 9 7 34 34 H 1.09004 * 109.46847 * 300.00361 * 10 9 7 35 35 H 1.08998 * 110.72460 * 35.21273 * 13 11 10 36 36 H 1.08996 * 110.87461 * 272.01189 * 13 11 10 37 37 H 1.09004 * 109.88388 * 218.38551 * 14 13 11 38 38 H 1.09003 * 109.88127 * 97.22547 * 14 13 11 39 39 H 1.08004 * 118.89568 * 0.02808 * 19 18 16 40 40 H 1.07998 * 120.01099 * 359.95747 * 23 22 20 41 41 H 1.07996 * 119.63414 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.85432 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.19491 * 179.97438 * 26 25 24 44 44 H 1.09001 * 110.37102 * 142.74175 * 30 15 14 45 45 H 1.09004 * 110.36485 * 265.05870 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 1 5.8816 -1.4917 0.7917 13 6 6.4268 -3.5082 0.1252 14 6 7.7664 -3.1563 -0.5555 15 7 7.5142 -2.0202 -1.4541 16 6 8.4377 -1.4016 -2.2162 17 8 8.1364 -0.4083 -2.8505 18 6 9.8102 -1.9277 -2.2812 19 6 10.0365 -3.2810 -2.4229 20 7 11.2717 -3.7962 -2.4795 21 1 11.3703 -4.7565 -2.5755 22 6 12.4082 -3.0199 -2.4127 23 6 13.6699 -3.6055 -2.4821 24 6 14.7984 -2.8186 -2.4148 25 6 14.6953 -1.4413 -2.2784 26 6 13.4579 -0.8408 -2.2078 27 6 12.3064 -1.6254 -2.2747 28 6 10.9644 -1.0184 -2.2019 29 8 10.8174 0.1855 -2.0821 30 6 6.0853 -1.6658 -1.3784 31 1 -0.4850 0.8401 0.0004 32 1 3.8645 -0.3620 -0.0007 33 1 3.8486 -3.0426 -0.8908 34 1 3.8491 -3.0422 0.8892 35 1 5.9275 -4.3204 -0.4030 36 1 6.5830 -3.7693 1.1718 37 1 8.1261 -4.0102 -1.1295 38 1 8.5028 -2.8767 0.1979 39 1 9.1894 -3.9480 -2.4858 40 1 13.7635 -4.6761 -2.5884 41 1 15.7741 -3.2784 -2.4688 42 1 15.5894 -0.8377 -2.2266 43 1 13.3796 0.2310 -2.1012 44 1 5.9590 -0.5846 -1.4355 45 1 5.5299 -2.1562 -2.1779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491815960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = -0.703966 kcal Electronic energy + Delta-G solvation = -28677.423305 eV Core-core repulsion = 24660.480435 eV Total energy + Delta-G solvation = -4016.942871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52966 -39.91455 -38.34992 -37.81105 -37.25313 -34.82247 -32.81166 -32.05386 -31.30891 -30.70566 -30.26681 -28.95019 -26.01441 -24.66328 -24.38451 -23.28782 -22.68477 -21.70098 -20.61186 -20.08600 -18.94531 -18.55276 -18.20565 -17.47677 -16.71124 -16.24729 -15.95103 -15.55765 -15.35179 -15.18183 -14.79393 -14.58095 -14.44113 -14.28657 -13.88345 -13.78551 -13.64203 -13.33722 -12.89183 -12.77350 -12.61468 -12.51399 -12.46051 -12.20993 -11.94579 -11.84755 -11.67650 -10.92867 -10.68352 -10.62969 -10.50366 -10.15119 -10.06544 -9.80879 -9.61982 -9.56533 -9.55061 -8.86338 -8.60095 -8.22001 -7.20638 -5.73466 -3.09293 0.25643 0.33517 1.18896 2.19247 2.41808 2.79583 3.10175 3.45307 3.49501 3.53499 3.54975 3.75033 3.99391 4.14368 4.24882 4.47018 4.52520 4.58809 4.62391 4.64822 4.73417 4.84115 4.98565 5.13835 5.20076 5.24712 5.28923 5.39470 5.42739 5.48974 5.58081 5.78361 5.78764 5.81992 5.85162 5.90574 5.96617 6.03293 6.17436 6.21956 6.35440 6.38894 6.44485 6.60964 6.72061 7.54501 7.60447 8.01492 8.27244 8.45355 9.24236 9.97054 10.16001 11.44661 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002311 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.185421 B =12113.621462 C =12971.110655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.111 4.111 12 H 0.085 0.915 13 C -0.124 4.124 14 C 0.101 3.899 15 N -0.621 5.621 16 C 0.595 3.405 17 O -0.517 6.517 18 C -0.316 4.316 19 C 0.202 3.798 20 N -0.598 5.598 21 H 0.422 0.578 22 C 0.182 3.818 23 C -0.169 4.169 24 C -0.060 4.060 25 C -0.154 4.154 26 C -0.031 4.031 27 C -0.182 4.182 28 C 0.434 3.566 29 O -0.459 6.459 30 C 0.114 3.886 31 H 0.259 0.741 32 H 0.362 0.638 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.172 0.828 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.080 0.920 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.156 -16.082 -3.882 37.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.043 3.957 11 C -0.130 4.130 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.383 3.617 17 O -0.392 6.392 18 C -0.328 4.328 19 C 0.070 3.930 20 N -0.205 5.205 21 H 0.259 0.741 22 C 0.081 3.919 23 C -0.190 4.190 24 C -0.079 4.079 25 C -0.173 4.173 26 C -0.049 4.049 27 C -0.186 4.186 28 C 0.315 3.685 29 O -0.336 6.336 30 C -0.008 4.008 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.189 0.811 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 33.739 -14.865 -4.218 37.109 hybrid contribution 0.566 0.581 -0.014 0.811 sum 34.305 -14.285 -4.232 37.401 Atomic orbital electron populations 1.69700 1.05109 1.25857 1.57492 1.24664 0.95238 0.97249 1.01879 0.86582 0.79207 0.84902 0.78062 1.20860 1.21711 1.20281 1.19024 0.80564 0.94698 1.43239 0.89198 1.42740 1.04125 1.02207 1.91185 1.20557 0.86670 0.89540 0.98968 1.22609 0.96965 0.96631 0.96827 0.89708 1.22636 0.93954 0.98277 1.01323 1.22132 0.98883 0.88453 0.92781 1.48486 1.09661 1.33879 1.43635 1.17004 0.82727 0.82819 0.79128 1.90847 1.79916 1.24370 1.44043 1.21821 0.95623 0.92854 1.22494 1.22066 0.87101 0.95238 0.88606 1.40810 1.03232 1.10996 1.65510 0.74150 1.17899 0.86514 0.90256 0.97229 1.20710 0.90060 1.00433 1.07776 1.21132 0.98245 0.93696 0.94797 1.21187 0.97708 0.94940 1.03424 1.21200 0.90581 1.00687 0.92439 1.20249 0.96436 0.91747 1.10191 1.19359 0.86254 0.88263 0.74589 1.90754 1.87473 1.15585 1.39829 1.22312 0.78925 1.01977 0.97547 0.93062 0.80544 0.95148 0.95002 0.90041 0.89812 0.92195 0.91484 0.81065 0.84765 0.84884 0.84922 0.84080 0.90169 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.81 13.97 55.49 0.78 -29.04 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 23.10 27.74 -169.99 -4.71 18.38 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 7 C -0.25 -7.03 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -18.11 5.35 -59.91 -0.32 -18.43 16 10 C 0.17 3.12 5.72 -4.04 -0.02 3.10 16 11 C -0.11 -1.62 3.03 -88.59 -0.27 -1.88 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.12 -1.21 6.42 -24.90 -0.16 -1.37 16 14 C 0.10 0.92 5.89 -3.06 -0.02 0.90 16 15 N -0.62 -8.59 3.33 -172.03 -0.57 -9.16 16 16 C 0.60 9.70 7.26 -12.65 -0.09 9.61 16 17 O -0.52 -11.12 16.81 -1.89 -0.03 -11.15 16 18 C -0.32 -3.96 5.56 -102.78 -0.57 -4.53 16 19 C 0.20 1.35 9.53 -16.73 -0.16 1.19 16 20 N -0.60 -2.55 5.21 -10.42 -0.05 -2.61 16 21 H 0.42 0.02 8.73 -40.82 -0.36 -0.33 16 22 C 0.18 1.21 6.66 -83.94 -0.56 0.65 16 23 C -0.17 -0.71 9.87 -39.38 -0.39 -1.10 16 24 C -0.06 -0.26 10.01 -39.56 -0.40 -0.65 16 25 C -0.15 -0.89 10.03 -39.57 -0.40 -1.29 16 26 C -0.03 -0.27 9.65 -39.30 -0.38 -0.65 16 27 C -0.18 -1.87 5.89 -104.81 -0.62 -2.49 16 28 C 0.43 6.23 7.12 -32.20 -0.23 6.00 16 29 O -0.46 -8.58 16.62 -2.10 -0.03 -8.62 16 30 C 0.11 1.81 6.35 -2.65 -0.02 1.80 16 31 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 32 H 0.36 8.67 5.53 -40.82 -0.23 8.45 16 33 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.34 5.73 -51.93 -0.30 0.04 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.17 0.63 6.05 -52.48 -0.32 0.31 16 40 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 41 H 0.13 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.14 1.29 7.79 -52.49 -0.41 0.88 16 44 H 0.08 1.51 7.99 -51.93 -0.41 1.10 16 45 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -41.38 373.53 -9.67 -51.04 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.81 Total: 1.77 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -4.53 Total: 2.18 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.17 Total: -59.24 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.07 Total: -19.77 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.38 -9.67 -51.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491815960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.337 kcal (2) G-P(sol) polarization free energy of solvation -41.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds