Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99541 * 2 1 4 4 H 1.48498 * 109.47149 * 89.99922 * 3 2 1 5 5 H 1.48500 * 109.47196 * 209.99445 * 3 2 1 6 6 H 1.48499 * 109.47190 * 329.99570 * 3 2 1 7 7 C 1.38811 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00130 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47357 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.88417 * 302.57805 * 11 10 9 13 13 C 1.55157 * 111.00781 * 178.65676 * 11 10 9 14 14 C 1.54320 * 102.94225 * 206.42812 * 13 11 10 15 15 N 1.47020 * 107.27392 * 22.18662 * 14 13 11 16 16 C 1.34772 * 125.64890 * 181.09927 * 15 14 13 17 17 O 1.21640 * 120.00278 * 174.64853 * 16 15 14 18 18 C 1.47143 * 119.99898 * 354.64918 * 16 15 14 19 19 C 1.37939 * 120.54962 * 315.67673 * 18 16 15 20 20 N 1.33958 * 122.19963 * 180.02562 * 19 18 16 21 21 H 0.96995 * 118.59764 * 179.97438 * 20 19 18 22 22 C 1.37801 * 122.80349 * 0.02898 * 20 19 18 23 23 C 1.39279 * 120.51471 * 179.97438 * 22 20 19 24 24 C 1.37731 * 119.97342 * 179.97438 * 23 22 20 25 25 C 1.38787 * 120.71873 * 0.04583 * 24 23 22 26 26 C 1.37713 * 120.29782 * 359.97438 * 25 24 23 27 27 C 1.39490 * 119.60992 * 359.97438 * 26 25 24 28 28 C 1.47152 * 120.54939 * 135.40621 * 18 16 15 29 29 O 1.21850 * 121.41397 * 0.02562 * 28 18 16 30 30 C 1.47420 * 108.70312 * 1.05928 * 15 14 13 31 31 H 0.96995 * 120.00196 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00184 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47152 * 300.00333 * 10 9 7 34 34 H 1.09008 * 109.46513 * 60.00341 * 10 9 7 35 35 H 1.09006 * 110.71561 * 324.78249 * 13 11 10 36 36 H 1.08998 * 110.72486 * 88.05675 * 13 11 10 37 37 H 1.09010 * 109.87843 * 262.77040 * 14 13 11 38 38 H 1.08995 * 110.01073 * 141.68126 * 14 13 11 39 39 H 1.07996 * 118.90422 * 0.03245 * 19 18 16 40 40 H 1.08004 * 120.01098 * 359.96017 * 23 22 20 41 41 H 1.07996 * 119.63937 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.84971 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.19249 * 180.02562 * 26 25 24 44 44 H 1.08991 * 110.37103 * 217.03012 * 30 15 14 45 45 H 1.09005 * 110.45704 * 94.75635 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.6999 6 1 1.4475 2.6527 -0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0022 11 6 5.6165 -2.1910 0.0032 12 1 5.8989 -1.5813 -0.8550 13 6 6.4280 -3.5130 0.0384 14 6 7.7533 -3.0874 0.7047 15 7 7.4836 -1.8604 1.4684 16 6 8.3915 -1.1613 2.1778 17 8 8.0784 -0.1048 2.6930 18 6 9.7617 -1.6759 2.3290 19 6 9.9829 -3.0051 2.6238 20 7 11.2157 -3.5085 2.7692 21 1 11.3108 -4.4512 2.9768 22 6 12.3546 -2.7440 2.6374 23 6 13.6137 -3.3171 2.7992 24 6 14.7447 -2.5426 2.6644 25 6 14.6467 -1.1902 2.3687 26 6 13.4121 -0.6025 2.2050 27 6 12.2581 -1.3748 2.3374 28 6 10.9189 -0.7823 2.1625 29 8 10.7766 0.3985 1.8974 30 6 6.0558 -1.5210 1.3290 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3619 0.0014 33 1 3.8486 -3.0417 0.8924 34 1 3.8493 -3.0428 -0.8876 35 1 5.9167 -4.2634 0.6416 36 1 6.6054 -3.8837 -0.9711 37 1 8.5058 -2.8908 -0.0591 38 1 8.1024 -3.8724 1.3754 39 1 9.1338 -3.6620 2.7413 40 1 13.7031 -4.3683 3.0304 41 1 15.7183 -2.9927 2.7906 42 1 15.5428 -0.5959 2.2666 43 1 13.3378 0.4501 1.9745 44 1 5.9268 -0.4404 1.2689 45 1 5.4849 -1.9245 2.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491815965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = -0.653704 kcal Electronic energy + Delta-G solvation = -28712.862314 eV Core-core repulsion = 24695.921623 eV Total energy + Delta-G solvation = -4016.940691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52675 -39.90857 -38.34927 -37.80838 -37.25088 -34.82099 -32.80513 -32.05125 -31.30551 -30.70585 -30.26723 -28.91783 -26.02294 -24.66025 -24.38118 -23.29826 -22.68667 -21.70481 -20.60708 -20.04202 -18.94261 -18.55498 -18.20371 -17.48046 -16.71020 -16.24596 -15.94649 -15.55359 -15.34894 -15.17825 -14.78927 -14.56358 -14.44932 -14.30748 -13.89028 -13.78063 -13.64240 -13.34043 -12.89200 -12.75968 -12.59639 -12.50742 -12.45047 -12.21802 -11.91048 -11.84414 -11.70642 -10.91660 -10.68331 -10.63447 -10.49380 -10.14750 -10.05943 -9.80512 -9.61631 -9.56577 -9.54730 -8.86221 -8.59373 -8.21744 -7.20540 -5.73316 -3.09195 0.25975 0.33813 1.19235 2.19535 2.42013 2.80246 3.10357 3.45854 3.50096 3.54101 3.55132 3.75402 3.99723 4.14723 4.25083 4.47191 4.52883 4.58885 4.62165 4.65109 4.73614 4.84422 4.98709 5.14010 5.21329 5.24978 5.29142 5.39701 5.42908 5.49443 5.58157 5.77607 5.78562 5.81973 5.85111 5.91727 5.96815 6.03583 6.18745 6.21617 6.35804 6.39574 6.44968 6.60484 6.72374 7.55047 7.60659 8.01534 8.27773 8.45514 9.24349 9.97188 10.16103 11.44791 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.002339 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.988804 B =11969.722450 C =12846.190999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.111 4.111 12 H 0.084 0.916 13 C -0.123 4.123 14 C 0.101 3.899 15 N -0.621 5.621 16 C 0.595 3.405 17 O -0.517 6.517 18 C -0.316 4.316 19 C 0.202 3.798 20 N -0.598 5.598 21 H 0.422 0.578 22 C 0.182 3.818 23 C -0.169 4.169 24 C -0.060 4.060 25 C -0.154 4.154 26 C -0.031 4.031 27 C -0.182 4.182 28 C 0.434 3.566 29 O -0.459 6.459 30 C 0.114 3.886 31 H 0.259 0.741 32 H 0.362 0.638 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.172 0.828 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.079 0.921 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.047 -15.585 5.329 37.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.043 3.957 11 C -0.130 4.130 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.383 3.617 17 O -0.392 6.392 18 C -0.328 4.328 19 C 0.070 3.930 20 N -0.206 5.206 21 H 0.258 0.742 22 C 0.081 3.919 23 C -0.190 4.190 24 C -0.079 4.079 25 C -0.173 4.173 26 C -0.049 4.049 27 C -0.186 4.186 28 C 0.315 3.685 29 O -0.337 6.337 30 C -0.008 4.008 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.189 0.811 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.625 -14.338 5.509 36.968 hybrid contribution 0.564 0.590 0.090 0.821 sum 34.189 -13.749 5.599 37.273 Atomic orbital electron populations 1.69701 1.05102 1.25864 1.57497 1.24664 0.95236 0.97243 1.01872 0.86590 0.79228 0.84909 0.78086 1.20846 1.20260 1.21698 1.19022 0.80559 0.94694 1.43243 0.89194 1.42732 1.04125 1.02216 1.91185 1.20557 0.86688 0.89540 0.98964 1.22646 0.97042 0.95954 0.97391 0.89715 1.22638 0.94128 0.97993 1.01422 1.22126 0.98851 0.86428 0.94825 1.48485 1.10100 1.27030 1.50049 1.17008 0.82751 0.83486 0.78435 1.90848 1.79227 1.21430 1.47659 1.21830 0.95652 0.93761 1.21527 1.22066 0.87157 0.94861 0.88942 1.40809 1.03266 1.12945 1.63537 0.74153 1.17901 0.86478 0.90479 0.97030 1.20709 0.90087 1.00708 1.07479 1.21131 0.98213 0.93725 0.94799 1.21186 0.97742 0.95255 1.03084 1.21197 0.90566 1.00380 0.92764 1.20248 0.96448 0.92415 1.09517 1.19356 0.86245 0.87702 0.75147 1.90749 1.87498 1.16453 1.38953 1.22332 0.79026 1.01692 0.97714 0.93060 0.80533 0.95184 0.94999 0.90007 0.89820 0.91509 0.92209 0.81065 0.84766 0.84885 0.84923 0.84082 0.90229 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 23.17 27.73 -169.99 -4.71 18.46 16 4 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.28 -6.93 6.52 56.52 0.37 -6.56 16 6 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.25 -7.03 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -18.12 5.26 -59.91 -0.31 -18.43 16 10 C 0.17 3.12 5.71 -4.04 -0.02 3.10 16 11 C -0.11 -1.62 3.10 -88.47 -0.27 -1.89 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.12 -1.21 6.42 -24.90 -0.16 -1.37 16 14 C 0.10 0.93 5.90 -3.07 -0.02 0.91 16 15 N -0.62 -8.66 3.33 -171.90 -0.57 -9.23 16 16 C 0.60 9.77 7.25 -12.65 -0.09 9.68 16 17 O -0.52 -11.19 16.83 -1.27 -0.02 -11.21 16 18 C -0.32 -3.98 5.55 -102.78 -0.57 -4.55 16 19 C 0.20 1.37 9.53 -16.73 -0.16 1.21 16 20 N -0.60 -2.58 5.21 -10.42 -0.05 -2.64 16 21 H 0.42 0.05 8.73 -40.82 -0.36 -0.31 16 22 C 0.18 1.22 6.66 -83.94 -0.56 0.66 16 23 C -0.17 -0.72 9.86 -39.38 -0.39 -1.10 16 24 C -0.06 -0.26 10.01 -39.56 -0.40 -0.65 16 25 C -0.15 -0.90 10.03 -39.57 -0.40 -1.29 16 26 C -0.03 -0.27 9.65 -39.31 -0.38 -0.65 16 27 C -0.18 -1.88 5.89 -104.81 -0.62 -2.49 16 28 C 0.43 6.25 7.12 -32.20 -0.23 6.02 16 29 O -0.46 -8.60 16.63 -1.46 -0.02 -8.63 16 30 C 0.11 1.83 6.11 -2.53 -0.02 1.82 16 31 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 32 H 0.36 8.70 5.40 -40.82 -0.22 8.48 16 33 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 38 H 0.06 0.34 5.72 -51.93 -0.30 0.04 16 39 H 0.17 0.64 6.05 -52.49 -0.32 0.33 16 40 H 0.13 0.15 8.06 -52.48 -0.42 -0.28 16 41 H 0.13 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 43 H 0.14 1.30 7.79 -52.48 -0.41 0.89 16 44 H 0.08 1.52 7.99 -51.93 -0.41 1.10 16 45 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -41.41 373.38 -9.65 -51.06 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.82 Total: 1.78 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -4.53 Total: 2.28 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.17 Total: -59.37 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.41 -9.65 -51.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491815965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.405 kcal (2) G-P(sol) polarization free energy of solvation -41.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds