Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99541 * 2 1 4 4 H 1.48498 * 109.47149 * 89.99922 * 3 2 1 5 5 H 1.48500 * 109.47196 * 209.99445 * 3 2 1 6 6 H 1.48499 * 109.47190 * 329.99570 * 3 2 1 7 7 C 1.38811 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00130 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47357 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.88417 * 302.57805 * 11 10 9 13 13 C 1.55157 * 111.00781 * 178.65676 * 11 10 9 14 14 C 1.54320 * 102.94225 * 206.42812 * 13 11 10 15 15 N 1.47020 * 107.27392 * 22.18662 * 14 13 11 16 16 C 1.34772 * 125.64890 * 181.09927 * 15 14 13 17 17 O 1.21640 * 120.00278 * 174.64853 * 16 15 14 18 18 C 1.47143 * 119.99898 * 354.64918 * 16 15 14 19 19 C 1.37939 * 120.54962 * 315.67673 * 18 16 15 20 20 N 1.33958 * 122.19963 * 180.02562 * 19 18 16 21 21 H 0.96995 * 118.59764 * 179.97438 * 20 19 18 22 22 C 1.37801 * 122.80349 * 0.02898 * 20 19 18 23 23 C 1.39279 * 120.51471 * 179.97438 * 22 20 19 24 24 C 1.37731 * 119.97342 * 179.97438 * 23 22 20 25 25 C 1.38787 * 120.71873 * 0.04583 * 24 23 22 26 26 C 1.37713 * 120.29782 * 359.97438 * 25 24 23 27 27 C 1.39490 * 119.60992 * 359.97438 * 26 25 24 28 28 C 1.47152 * 120.54939 * 135.40621 * 18 16 15 29 29 O 1.21850 * 121.41397 * 0.02562 * 28 18 16 30 30 C 1.47420 * 108.70312 * 1.05928 * 15 14 13 31 31 H 0.96995 * 120.00196 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00184 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47152 * 300.00333 * 10 9 7 34 34 H 1.09008 * 109.46513 * 60.00341 * 10 9 7 35 35 H 1.09006 * 110.71561 * 324.78249 * 13 11 10 36 36 H 1.08998 * 110.72486 * 88.05675 * 13 11 10 37 37 H 1.09010 * 109.87843 * 262.77040 * 14 13 11 38 38 H 1.08995 * 110.01073 * 141.68126 * 14 13 11 39 39 H 1.07996 * 118.90422 * 0.03245 * 19 18 16 40 40 H 1.08004 * 120.01098 * 359.96017 * 23 22 20 41 41 H 1.07996 * 119.63937 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.84971 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.19249 * 180.02562 * 26 25 24 44 44 H 1.08991 * 110.37103 * 217.03012 * 30 15 14 45 45 H 1.09005 * 110.45704 * 94.75635 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.6999 6 1 1.4475 2.6527 -0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0022 11 6 5.6165 -2.1910 0.0032 12 1 5.8989 -1.5813 -0.8550 13 6 6.4280 -3.5130 0.0384 14 6 7.7533 -3.0874 0.7047 15 7 7.4836 -1.8604 1.4684 16 6 8.3915 -1.1613 2.1778 17 8 8.0784 -0.1048 2.6930 18 6 9.7617 -1.6759 2.3290 19 6 9.9829 -3.0051 2.6238 20 7 11.2157 -3.5085 2.7692 21 1 11.3108 -4.4512 2.9768 22 6 12.3546 -2.7440 2.6374 23 6 13.6137 -3.3171 2.7992 24 6 14.7447 -2.5426 2.6644 25 6 14.6467 -1.1902 2.3687 26 6 13.4121 -0.6025 2.2050 27 6 12.2581 -1.3748 2.3374 28 6 10.9189 -0.7823 2.1625 29 8 10.7766 0.3985 1.8974 30 6 6.0558 -1.5210 1.3290 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3619 0.0014 33 1 3.8486 -3.0417 0.8924 34 1 3.8493 -3.0428 -0.8876 35 1 5.9167 -4.2634 0.6416 36 1 6.6054 -3.8837 -0.9711 37 1 8.5058 -2.8908 -0.0591 38 1 8.1024 -3.8724 1.3754 39 1 9.1338 -3.6620 2.7413 40 1 13.7031 -4.3683 3.0304 41 1 15.7183 -2.9927 2.7906 42 1 15.5428 -0.5959 2.2666 43 1 13.3378 0.4501 1.9745 44 1 5.9268 -0.4404 1.2689 45 1 5.4849 -1.9245 2.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491815965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = -32.540560 kcal Electronic energy + Delta-G solvation = -28714.245032 eV Core-core repulsion = 24695.921623 eV Total energy + Delta-G solvation = -4018.323409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20546 -40.93149 -39.31479 -38.64129 -38.19873 -36.57588 -34.18124 -33.24128 -32.38920 -31.70490 -30.95303 -30.11421 -27.45197 -25.62671 -25.14755 -24.42243 -23.44648 -23.11582 -21.65460 -21.15001 -19.79531 -19.46683 -19.17686 -18.90524 -17.68886 -17.20035 -16.90366 -16.58995 -16.42014 -16.08232 -15.93849 -15.70543 -15.52794 -15.25735 -14.92824 -14.91803 -14.68053 -14.51507 -14.22470 -14.03702 -13.83799 -13.68986 -13.39591 -13.11547 -13.05788 -12.93274 -12.82882 -12.30593 -12.28984 -11.98819 -11.85841 -11.78299 -11.59313 -11.30879 -11.01513 -10.63893 -10.43198 -10.09455 -9.69702 -9.30605 -8.89099 -8.06354 -5.37453 -0.35072 -0.27324 0.64210 1.32258 1.36292 1.39862 1.44895 1.71531 1.84507 2.22566 2.42813 2.86556 3.06370 3.25986 3.35132 3.46740 3.56318 3.64691 3.78559 3.82795 3.96113 3.98595 4.24242 4.28119 4.30656 4.34056 4.43435 4.50739 4.56966 4.63703 4.71908 4.79631 4.86403 4.87447 4.96675 5.02975 5.08998 5.20603 5.29657 5.37265 5.43350 5.47457 5.48724 5.74509 5.86021 6.13251 6.18949 6.49830 6.74618 7.05194 7.14552 7.83367 7.98684 9.15037 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.002339 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.988804 B =11969.722450 C =12846.190999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.058 4.058 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.262 1.262 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.765 5.765 10 C 0.166 3.834 11 C -0.104 4.104 12 H 0.074 0.926 13 C -0.109 4.109 14 C 0.095 3.905 15 N -0.617 5.617 16 C 0.589 3.411 17 O -0.595 6.595 18 C -0.377 4.377 19 C 0.262 3.738 20 N -0.562 5.562 21 H 0.451 0.549 22 C 0.173 3.827 23 C -0.145 4.145 24 C -0.053 4.053 25 C -0.144 4.144 26 C -0.065 4.065 27 C -0.208 4.208 28 C 0.413 3.587 29 O -0.542 6.542 30 C 0.112 3.888 31 H 0.257 0.743 32 H 0.360 0.640 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.217 0.783 40 H 0.184 0.816 41 H 0.174 0.826 42 H 0.152 0.848 43 H 0.114 0.886 44 H 0.033 0.967 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.553 -21.485 5.740 44.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.769 3.231 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.087 0.913 9 N -0.410 5.410 10 C 0.041 3.959 11 C -0.124 4.124 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.026 4.026 15 N -0.351 5.351 16 C 0.381 3.619 17 O -0.475 6.475 18 C -0.389 4.389 19 C 0.125 3.875 20 N -0.170 5.170 21 H 0.294 0.706 22 C 0.071 3.929 23 C -0.165 4.165 24 C -0.072 4.072 25 C -0.163 4.163 26 C -0.083 4.083 27 C -0.212 4.212 28 C 0.302 3.698 29 O -0.427 6.427 30 C -0.011 4.011 31 H 0.066 0.934 32 H 0.193 0.807 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.234 0.766 40 H 0.201 0.799 41 H 0.191 0.809 42 H 0.170 0.830 43 H 0.132 0.868 44 H 0.052 0.948 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 38.243 -20.397 5.902 43.742 hybrid contribution -0.633 2.146 0.010 2.238 sum 37.610 -18.250 5.912 42.220 Atomic orbital electron populations 1.69837 1.06639 1.26432 1.60094 1.25333 0.95977 1.00466 1.03240 0.85632 0.78561 0.81144 0.77758 1.21390 1.18728 1.21733 1.19085 0.82594 0.93604 1.40369 0.91346 1.42889 1.02735 1.04459 1.90940 1.20795 0.88560 0.87149 0.99446 1.22489 0.95073 0.98970 0.95828 0.90797 1.22687 0.93148 0.95228 1.03602 1.22518 0.98955 0.85439 0.95707 1.48527 1.08642 1.28307 1.49620 1.17674 0.84241 0.82641 0.77386 1.90782 1.80708 1.24985 1.51047 1.21316 0.92796 0.96260 1.28496 1.22392 0.89068 0.92816 0.83251 1.40924 1.01968 1.14131 1.59994 0.70563 1.18035 0.88330 0.89089 0.97415 1.21269 0.88256 1.02790 1.04183 1.21670 1.00278 0.92615 0.92638 1.21498 0.96807 0.96706 1.01282 1.21184 0.92065 0.99728 0.95362 1.20173 0.94579 0.94592 1.11847 1.20135 0.88734 0.87200 0.73777 1.90687 1.88726 1.19426 1.43879 1.22169 0.81071 0.99152 0.98666 0.93358 0.80749 0.94380 0.93989 0.87927 0.87223 0.90537 0.87072 0.76632 0.79868 0.80862 0.83004 0.86756 0.94808 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.44 13.97 21.65 0.30 -64.13 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.94 49.60 27.73 68.60 1.90 51.51 16 4 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.26 -13.01 6.52 99.48 0.65 -12.36 16 6 H -0.29 -15.25 7.11 99.48 0.71 -14.55 16 7 C -0.23 -13.14 10.47 84.03 0.88 -12.26 16 8 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 9 N -0.77 -36.95 5.26 -343.46 -1.81 -38.75 16 10 C 0.17 5.93 5.71 86.38 0.49 6.42 16 11 C -0.10 -2.92 3.10 -9.40 -0.03 -2.95 16 12 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -1.66 6.42 31.78 0.20 -1.45 16 14 C 0.09 1.36 5.90 86.73 0.51 1.87 16 15 N -0.62 -17.05 3.33 -816.00 -2.71 -19.76 16 16 C 0.59 20.51 7.25 86.58 0.63 21.14 16 17 O -0.59 -28.70 16.83 2.07 0.03 -28.67 16 18 C -0.38 -9.59 5.55 -18.67 -0.10 -9.69 16 19 C 0.26 2.43 9.53 84.30 0.80 3.23 16 20 N -0.56 -1.56 5.21 -186.89 -0.97 -2.53 16 21 H 0.45 -3.67 8.73 -92.71 -0.81 -4.47 16 22 C 0.17 1.60 6.66 39.01 0.26 1.86 16 23 C -0.15 -0.28 9.86 22.40 0.22 -0.06 16 24 C -0.05 -0.16 10.01 22.28 0.22 0.06 16 25 C -0.14 -1.36 10.03 22.28 0.22 -1.14 16 26 C -0.06 -1.22 9.65 22.45 0.22 -1.00 16 27 C -0.21 -4.33 5.89 -19.99 -0.12 -4.45 16 28 C 0.41 13.09 7.12 27.05 0.19 13.28 16 29 O -0.54 -23.63 16.63 1.40 0.02 -23.61 16 30 C 0.11 3.72 6.11 86.86 0.53 4.25 16 31 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 32 H 0.36 17.63 5.40 -92.71 -0.50 17.13 16 33 H 0.04 1.32 8.10 -2.39 -0.02 1.31 16 34 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.10 1.22 8.04 -2.38 -0.02 1.20 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.11 0.47 5.72 -2.39 -0.01 0.45 16 39 H 0.22 0.08 6.05 -2.91 -0.02 0.06 16 40 H 0.18 -1.33 8.06 -2.91 -0.02 -1.36 16 41 H 0.17 -0.73 8.06 -2.91 -0.02 -0.76 16 42 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 43 H 0.11 2.62 7.79 -2.91 -0.02 2.59 16 44 H 0.03 1.40 7.99 -2.39 -0.02 1.38 16 45 H 0.07 2.40 8.00 -2.38 -0.02 2.38 16 Total: -1.00 -107.31 373.38 2.05 -105.25 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -0.32 Total: 4.70 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.60 Total: 15.99 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.19 Total: -125.18 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: 0.06 Total: -52.28 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.90 Total: 51.51 kcal Total: -107.31 2.05 -105.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491815965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.714 kcal (2) G-P(sol) polarization free energy of solvation -107.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds