Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48506 * 109.46694 * 269.99748 * 3 2 1 5 5 H 1.48503 * 109.47391 * 29.99324 * 3 2 1 6 6 H 1.48493 * 109.47288 * 150.00080 * 3 2 1 7 7 C 1.38803 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00267 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00334 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47229 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.91772 * 51.10444 * 11 10 9 13 13 C 1.55158 * 111.00694 * 175.00064 * 11 10 9 14 14 C 1.54322 * 103.10612 * 153.66870 * 13 11 10 15 15 N 1.47025 * 107.26788 * 337.72037 * 14 13 11 16 16 C 1.34778 * 125.64830 * 178.90620 * 15 14 13 17 17 O 1.21643 * 120.00148 * 180.02562 * 16 15 14 18 18 C 1.47097 * 120.00136 * 0.02562 * 16 15 14 19 19 C 1.42469 * 128.38009 * 5.78687 * 18 16 15 20 20 N 1.29881 * 106.40617 * 179.89908 * 19 18 16 21 21 O 1.20736 * 112.76366 * 0.39352 * 20 19 18 22 22 C 1.34242 * 111.94727 * 359.74481 * 21 20 19 23 23 C 1.47554 * 127.17366 * 179.97438 * 22 21 20 24 24 C 1.39700 * 120.16109 * 51.54131 * 23 22 21 25 25 C 1.37922 * 119.84103 * 179.71849 * 24 23 22 26 26 C 1.38380 * 120.15778 * 0.55399 * 25 24 23 27 27 C 1.38386 * 120.31570 * 359.72014 * 26 25 24 28 28 C 1.37919 * 120.15878 * 0.02562 * 27 26 25 29 29 C 1.47426 * 108.70359 * 358.93903 * 15 14 13 30 30 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99607 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46875 * 60.00221 * 10 9 7 33 33 H 1.09002 * 109.47827 * 300.00512 * 10 9 7 34 34 H 1.09005 * 110.72289 * 35.21430 * 13 11 10 35 35 H 1.09003 * 110.71936 * 272.11924 * 13 11 10 36 36 H 1.09003 * 109.88527 * 97.13576 * 14 13 11 37 37 H 1.09001 * 109.88615 * 218.30652 * 14 13 11 38 38 H 1.08001 * 126.79874 * 0.03907 * 19 18 16 39 39 H 1.08000 * 120.07317 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.92267 * 180.25527 * 25 24 23 41 41 H 1.07993 * 119.84336 * 179.69615 * 26 25 24 42 42 H 1.07997 * 119.91933 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.08101 * 179.97438 * 28 27 26 44 44 H 1.09000 * 110.36499 * 142.96840 * 29 15 14 45 45 H 1.08996 * 110.36704 * 265.17871 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1911 0.0011 12 1 5.8821 -1.4914 0.7935 13 6 6.4269 -3.5081 0.1273 14 6 7.7688 -3.1595 -0.5505 15 7 7.5207 -2.0244 -1.4514 16 6 8.4471 -1.4084 -2.2122 17 8 8.1273 -0.4745 -2.9230 18 6 9.8450 -1.8653 -2.1830 19 6 10.3918 -2.9973 -1.5126 20 7 11.6639 -2.9997 -1.7746 21 8 11.9984 -2.0747 -2.4748 22 6 10.9587 -1.2907 -2.8009 23 6 10.9864 -0.0752 -3.6371 24 6 11.5852 -0.1049 -4.8989 25 6 11.6022 1.0335 -5.6774 26 6 11.0381 2.2062 -5.2066 27 6 10.4483 2.2444 -3.9553 28 6 10.4194 1.1123 -3.1681 29 6 6.0910 -1.6710 -1.3841 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0014 32 1 3.8492 -3.0421 -0.8892 33 1 3.8485 -3.0426 0.8908 34 1 5.9276 -4.3204 -0.4010 35 1 6.5800 -3.7678 1.1748 36 1 8.5038 -2.8799 0.2044 37 1 8.1286 -4.0148 -1.1224 38 1 9.8544 -3.7132 -0.9084 39 1 12.0300 -1.0182 -5.2656 40 1 12.0611 1.0110 -6.6548 41 1 11.0586 3.0958 -5.8184 42 1 10.0097 3.1629 -3.5944 43 1 9.9591 1.1437 -2.1916 44 1 5.9640 -0.5903 -1.4469 45 1 5.5403 -2.1641 -2.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491842856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 82.301992 kcal Electronic energy + Delta-G solvation = -28885.494142 eV Core-core repulsion = 24872.150680 eV Total energy + Delta-G solvation = -4013.343462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.31487 -40.17039 -39.33633 -37.73758 -35.03402 -34.33412 -33.40975 -32.29134 -31.27554 -30.84855 -29.99392 -29.12990 -26.47523 -24.80444 -23.94242 -23.27993 -22.63711 -22.02824 -21.64640 -20.32842 -19.67550 -18.28171 -18.04859 -17.81491 -17.41111 -16.54388 -16.29616 -15.77788 -15.28924 -15.01145 -14.84306 -14.46999 -14.40519 -13.95882 -13.85895 -13.71904 -13.62499 -13.16412 -13.04009 -12.85731 -12.70403 -12.33795 -12.02934 -11.98114 -11.76699 -11.66204 -11.47620 -11.00780 -10.92788 -10.76057 -10.70024 -10.56259 -10.24814 -10.14748 -10.10249 -9.61110 -9.24409 -8.95065 -8.92527 -8.75396 -7.27010 -5.78895 -3.15218 0.24843 1.10676 1.18427 1.47619 2.36534 2.79607 2.99334 3.37129 3.40684 3.43237 3.45540 3.81052 4.07956 4.24738 4.39800 4.48299 4.57733 4.58807 4.62012 4.70473 4.76137 4.81255 4.88605 5.07413 5.11625 5.21513 5.23390 5.36882 5.37337 5.52017 5.53515 5.68286 5.69489 5.72015 5.76158 5.82542 6.02567 6.05298 6.09183 6.11349 6.18717 6.21781 6.54397 6.58042 6.64921 7.30689 7.71792 7.95875 7.96347 8.39803 9.18238 9.90675 10.09382 11.39375 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.002905 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.391661 B = 9637.036145 C =11587.283244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.125 4.125 14 C 0.092 3.908 15 N -0.609 5.609 16 C 0.605 3.395 17 O -0.521 6.521 18 C -0.238 4.238 19 C 0.018 3.982 20 N -0.362 5.362 21 O 0.112 5.888 22 C 0.086 3.914 23 C -0.038 4.038 24 C -0.084 4.084 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.121 4.121 28 C -0.047 4.047 29 C 0.115 3.885 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.207 0.793 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.756 -3.362 -6.384 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.129 4.129 12 H 0.104 0.896 13 C -0.163 4.163 14 C -0.031 4.031 15 N -0.343 5.343 16 C 0.393 3.607 17 O -0.399 6.399 18 C -0.245 4.245 19 C -0.161 4.161 20 N -0.066 5.066 21 O 0.049 5.951 22 C 0.020 3.980 23 C -0.039 4.039 24 C -0.103 4.103 25 C -0.145 4.145 26 C -0.115 4.115 27 C -0.139 4.139 28 C -0.065 4.065 29 C -0.006 4.006 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.223 0.777 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 28.410 -3.734 -6.463 29.375 hybrid contribution -0.297 1.310 0.064 1.344 sum 28.113 -2.425 -6.398 28.934 Atomic orbital electron populations 1.69698 1.05118 1.25891 1.57405 1.24667 0.95225 0.97226 1.01879 0.86573 0.79161 0.85000 0.77950 1.20896 1.21671 1.20383 1.19035 0.80537 0.94755 1.43279 0.89157 1.42721 1.04137 1.02132 1.91240 1.20559 0.86529 0.89574 0.99144 1.22737 0.97086 0.96672 0.96422 0.89594 1.22663 0.93764 0.98386 1.01486 1.22383 0.99211 0.88780 0.92757 1.48284 1.09643 1.33432 1.42902 1.16316 0.82306 0.82214 0.79887 1.90875 1.80647 1.28079 1.40249 1.21447 0.95636 1.00029 1.07369 1.25570 0.90308 0.99026 1.01209 1.73567 1.16726 1.06444 1.09834 1.84904 1.33453 1.27658 1.49055 1.23106 0.85679 0.93164 0.96062 1.17479 1.03914 0.88999 0.93526 1.21212 0.97330 0.98990 0.92726 1.21040 1.00787 0.92615 1.00021 1.21376 0.96272 0.98153 0.95683 1.21091 0.99763 0.98445 0.94567 1.21093 0.94659 0.90764 1.00028 1.22491 0.78305 1.01937 0.97867 0.93009 0.80626 0.95065 0.94838 0.89838 0.89574 0.91089 0.91104 0.77691 0.85419 0.85304 0.85520 0.85165 0.85593 0.90033 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.76 -17.41 5.36 -59.92 -0.32 -17.73 16 10 C 0.17 2.99 5.73 -4.05 -0.02 2.97 16 11 C -0.11 -1.49 3.07 -88.22 -0.27 -1.76 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.18 6.40 -24.90 -0.16 -1.34 16 14 C 0.09 0.82 5.04 -3.06 -0.02 0.80 16 15 N -0.61 -7.71 3.33 -171.60 -0.57 -8.28 16 16 C 0.60 8.51 7.82 -12.67 -0.10 8.41 16 17 O -0.52 -8.91 14.74 5.24 0.08 -8.83 16 18 C -0.24 -2.83 6.25 -104.12 -0.65 -3.48 16 19 C 0.02 0.18 10.59 -16.75 -0.18 0.00 16 20 N -0.36 -4.03 11.98 30.84 0.37 -3.66 16 21 O 0.11 1.24 11.17 16.69 0.19 1.43 16 22 C 0.09 0.99 6.95 -35.23 -0.24 0.74 16 23 C -0.04 -0.42 5.35 -105.00 -0.56 -0.98 16 24 C -0.08 -0.78 9.79 -39.15 -0.38 -1.16 16 25 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 26 C -0.10 -0.79 10.04 -39.47 -0.40 -1.19 16 27 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 28 C -0.05 -0.53 8.04 -39.15 -0.31 -0.84 16 29 C 0.12 1.68 6.35 -2.27 -0.01 1.66 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.36 8.20 5.53 -40.82 -0.23 7.98 16 32 H 0.03 0.56 7.98 -51.92 -0.41 0.15 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.53 7.25 -51.93 -0.38 0.16 16 37 H 0.07 0.50 6.77 -51.93 -0.35 0.15 16 38 H 0.21 1.41 4.97 -52.49 -0.26 1.15 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.47 7.79 -52.49 -0.41 1.06 16 44 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 45 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -34.39 373.79 -8.76 -43.15 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.83 Total: 5.42 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.36 Total: -6.07 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.25 Total: -58.17 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.26 Total: -7.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.39 -8.76 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.448 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds