Wall clock time and date at job start Sat Apr 11 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48506 * 109.46694 * 269.99748 * 3 2 1 5 5 H 1.48503 * 109.47391 * 29.99324 * 3 2 1 6 6 H 1.48493 * 109.47288 * 150.00080 * 3 2 1 7 7 C 1.38803 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00267 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00334 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47229 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.91772 * 51.10444 * 11 10 9 13 13 C 1.55158 * 111.00694 * 175.00064 * 11 10 9 14 14 C 1.54322 * 103.10612 * 153.66870 * 13 11 10 15 15 N 1.47025 * 107.26788 * 337.72037 * 14 13 11 16 16 C 1.34778 * 125.64830 * 178.90620 * 15 14 13 17 17 O 1.21643 * 120.00148 * 180.02562 * 16 15 14 18 18 C 1.47097 * 120.00136 * 0.02562 * 16 15 14 19 19 C 1.42469 * 128.38009 * 5.78687 * 18 16 15 20 20 N 1.29881 * 106.40617 * 179.89908 * 19 18 16 21 21 O 1.20736 * 112.76366 * 0.39352 * 20 19 18 22 22 C 1.34242 * 111.94727 * 359.74481 * 21 20 19 23 23 C 1.47554 * 127.17366 * 179.97438 * 22 21 20 24 24 C 1.39700 * 120.16109 * 51.54131 * 23 22 21 25 25 C 1.37922 * 119.84103 * 179.71849 * 24 23 22 26 26 C 1.38380 * 120.15778 * 0.55399 * 25 24 23 27 27 C 1.38386 * 120.31570 * 359.72014 * 26 25 24 28 28 C 1.37919 * 120.15878 * 0.02562 * 27 26 25 29 29 C 1.47426 * 108.70359 * 358.93903 * 15 14 13 30 30 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99607 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46875 * 60.00221 * 10 9 7 33 33 H 1.09002 * 109.47827 * 300.00512 * 10 9 7 34 34 H 1.09005 * 110.72289 * 35.21430 * 13 11 10 35 35 H 1.09003 * 110.71936 * 272.11924 * 13 11 10 36 36 H 1.09003 * 109.88527 * 97.13576 * 14 13 11 37 37 H 1.09001 * 109.88615 * 218.30652 * 14 13 11 38 38 H 1.08001 * 126.79874 * 0.03907 * 19 18 16 39 39 H 1.08000 * 120.07317 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.92267 * 180.25527 * 25 24 23 41 41 H 1.07993 * 119.84336 * 179.69615 * 26 25 24 42 42 H 1.07997 * 119.91933 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.08101 * 179.97438 * 28 27 26 44 44 H 1.09000 * 110.36499 * 142.96840 * 29 15 14 45 45 H 1.08996 * 110.36704 * 265.17871 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1911 0.0011 12 1 5.8821 -1.4914 0.7935 13 6 6.4269 -3.5081 0.1273 14 6 7.7688 -3.1595 -0.5505 15 7 7.5207 -2.0244 -1.4514 16 6 8.4471 -1.4084 -2.2122 17 8 8.1273 -0.4745 -2.9230 18 6 9.8450 -1.8653 -2.1830 19 6 10.3918 -2.9973 -1.5126 20 7 11.6639 -2.9997 -1.7746 21 8 11.9984 -2.0747 -2.4748 22 6 10.9587 -1.2907 -2.8009 23 6 10.9864 -0.0752 -3.6371 24 6 11.5852 -0.1049 -4.8989 25 6 11.6022 1.0335 -5.6774 26 6 11.0381 2.2062 -5.2066 27 6 10.4483 2.2444 -3.9553 28 6 10.4194 1.1123 -3.1681 29 6 6.0910 -1.6710 -1.3841 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0014 32 1 3.8492 -3.0421 -0.8892 33 1 3.8485 -3.0426 0.8908 34 1 5.9276 -4.3204 -0.4010 35 1 6.5800 -3.7678 1.1748 36 1 8.5038 -2.8799 0.2044 37 1 8.1286 -4.0148 -1.1224 38 1 9.8544 -3.7132 -0.9084 39 1 12.0300 -1.0182 -5.2656 40 1 12.0611 1.0110 -6.6548 41 1 11.0586 3.0958 -5.8184 42 1 10.0097 3.1629 -3.5944 43 1 9.9591 1.1437 -2.1916 44 1 5.9640 -0.5903 -1.4469 45 1 5.5403 -2.1641 -2.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491842856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:32 Heat of formation + Delta-G solvation = 60.729539 kcal Electronic energy + Delta-G solvation = -28886.429594 eV Core-core repulsion = 24872.150680 eV Total energy + Delta-G solvation = -4014.278914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.12839 -41.18575 -40.04137 -38.84649 -36.64332 -35.30868 -34.19175 -33.93847 -32.40956 -31.95780 -30.77308 -30.23745 -27.79674 -26.02583 -24.72584 -24.45324 -23.49004 -23.20007 -22.68674 -21.52661 -20.57079 -19.69742 -19.01770 -18.85978 -18.50980 -17.43093 -17.21401 -16.81162 -16.57990 -16.05138 -15.90201 -15.73949 -15.46152 -15.23733 -14.92657 -14.65547 -14.45279 -14.40995 -14.18631 -13.98823 -13.83394 -13.73468 -13.37875 -13.01828 -12.85678 -12.80755 -12.34705 -12.25339 -12.15299 -11.96654 -11.86697 -11.79520 -11.75673 -11.58624 -11.29522 -10.99561 -10.97609 -9.95510 -9.81444 -9.63317 -9.30149 -8.04146 -5.36899 -0.57826 0.38076 0.43348 0.67220 1.35513 1.38975 1.44930 1.47403 1.87485 2.00055 2.46220 2.72439 3.01818 3.26176 3.28653 3.36951 3.46867 3.58908 3.71362 3.83669 3.93284 3.97392 4.03066 4.05535 4.21979 4.24425 4.36772 4.46230 4.49449 4.53626 4.58349 4.67299 4.76271 4.83037 4.85759 5.00103 5.02389 5.03091 5.13385 5.22957 5.35534 5.39814 5.42687 5.50370 5.75662 5.92321 6.20288 6.33133 6.86885 6.95171 7.07099 7.83992 8.00464 9.17452 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.002905 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.391661 B = 9637.036145 C =11587.283244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.761 5.761 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.086 0.914 13 C -0.113 4.113 14 C 0.085 3.915 15 N -0.607 5.607 16 C 0.601 3.399 17 O -0.563 6.563 18 C -0.256 4.256 19 C 0.037 3.963 20 N -0.375 5.375 21 O 0.107 5.893 22 C 0.092 3.908 23 C -0.061 4.061 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.134 4.134 28 C -0.067 4.067 29 C 0.117 3.883 30 H 0.258 0.742 31 H 0.364 0.636 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.238 0.762 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.053 0.947 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.737 -4.135 -6.439 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.407 5.407 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.104 0.896 13 C -0.151 4.151 14 C -0.036 4.036 15 N -0.340 5.340 16 C 0.390 3.610 17 O -0.443 6.443 18 C -0.263 4.263 19 C -0.142 4.142 20 N -0.081 5.081 21 O 0.047 5.953 22 C 0.025 3.975 23 C -0.063 4.063 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.152 4.152 28 C -0.086 4.086 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.196 0.804 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.254 0.746 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.128 0.872 44 H 0.072 0.928 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 31.465 -4.555 -6.500 32.451 hybrid contribution -1.231 1.466 0.030 1.915 sum 30.234 -3.089 -6.470 31.072 Atomic orbital electron populations 1.69867 1.07018 1.26614 1.59899 1.25446 0.96044 1.01012 1.02880 0.85504 0.78729 0.80223 0.77921 1.20979 1.22035 1.17769 1.19062 0.82737 0.93529 1.40869 0.92030 1.42797 1.02568 1.04354 1.90992 1.20755 0.88837 0.87299 0.99149 1.22554 0.94525 0.99321 0.95605 0.89596 1.22685 0.92952 0.95959 1.03471 1.22713 0.99569 0.88351 0.92976 1.48301 1.08476 1.34157 1.43035 1.16601 0.83168 0.81751 0.79441 1.90847 1.81411 1.29937 1.42083 1.21302 0.94602 1.01368 1.08999 1.25970 0.89734 0.98320 1.00166 1.73565 1.17322 1.06754 1.10451 1.84907 1.33286 1.27788 1.49312 1.23298 0.85762 0.93014 0.95389 1.17681 1.05125 0.88880 0.94565 1.21501 0.96962 1.00267 0.92150 1.21448 0.99955 0.91917 1.00960 1.21750 0.95053 0.99380 0.95172 1.21338 1.00175 0.98380 0.95279 1.21099 0.95677 0.91833 0.99983 1.22307 0.79798 1.00202 0.98288 0.93346 0.80368 0.95161 0.94113 0.88973 0.86911 0.88804 0.88339 0.74586 0.83862 0.82284 0.82755 0.84136 0.87239 0.92793 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 46.29 27.74 68.60 1.90 48.20 16 4 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 7 C -0.23 -13.08 10.47 84.03 0.88 -12.20 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.76 -34.71 5.36 -343.47 -1.84 -36.55 16 10 C 0.17 5.65 5.73 86.38 0.49 6.15 16 11 C -0.10 -2.52 3.07 -9.24 -0.03 -2.55 16 12 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.11 -1.69 6.40 31.78 0.20 -1.49 16 14 C 0.09 1.19 5.04 86.73 0.44 1.63 16 15 N -0.61 -14.44 3.33 -815.06 -2.71 -17.15 16 16 C 0.60 16.67 7.82 86.57 0.68 17.35 16 17 O -0.56 -19.78 14.74 -4.17 -0.06 -19.85 16 18 C -0.26 -5.81 6.25 -19.54 -0.12 -5.93 16 19 C 0.04 0.64 10.59 86.04 0.91 1.55 16 20 N -0.38 -7.60 11.98 -56.89 -0.68 -8.28 16 21 O 0.11 2.25 11.17 69.94 0.78 3.03 16 22 C 0.09 2.07 6.95 25.09 0.17 2.24 16 23 C -0.06 -1.36 5.35 -20.11 -0.11 -1.47 16 24 C -0.09 -1.57 9.79 22.55 0.22 -1.35 16 25 C -0.13 -1.74 10.03 22.23 0.22 -1.51 16 26 C -0.10 -1.40 10.04 22.34 0.22 -1.17 16 27 C -0.13 -2.53 10.03 22.23 0.22 -2.31 16 28 C -0.07 -1.56 8.04 22.55 0.18 -1.38 16 29 C 0.12 3.32 6.35 87.02 0.55 3.87 16 30 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.36 16.17 5.53 -92.71 -0.51 15.66 16 32 H 0.03 1.06 7.98 -2.38 -0.02 1.04 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.28 8.04 -2.38 -0.02 1.26 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 0.96 7.25 -2.39 -0.02 0.94 16 37 H 0.10 0.91 6.77 -2.39 -0.02 0.89 16 38 H 0.24 2.19 4.97 -2.91 -0.01 2.18 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.11 2.77 7.79 -2.91 -0.02 2.75 16 44 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 45 H 0.07 2.03 7.93 -2.39 -0.02 2.01 16 Total: -1.00 -77.92 373.79 3.76 -74.16 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.46 Total: 21.31 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.61 Total: -1.80 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -4.93 Total: -125.05 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.72 Total: -16.82 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.20 kcal Total: -77.92 3.76 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.887 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds