Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48504 * 109.46818 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47519 * 119.99862 * 3 2 1 6 6 H 1.48498 * 109.47102 * 240.00198 * 3 2 1 7 7 C 1.38817 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00161 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99951 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47018 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88855 * 302.57373 * 11 10 9 13 13 C 1.55156 * 111.00128 * 178.65351 * 11 10 9 14 14 C 1.54327 * 102.94125 * 206.42459 * 13 11 10 15 15 N 1.47024 * 107.26994 * 22.19233 * 14 13 11 16 16 C 1.34777 * 125.64731 * 181.02877 * 15 14 13 17 17 O 1.21652 * 119.99744 * 180.02562 * 16 15 14 18 18 C 1.47096 * 120.00162 * 0.03674 * 16 15 14 19 19 C 1.42463 * 128.38347 * 5.19659 * 18 16 15 20 20 N 1.29885 * 106.41018 * 179.89692 * 19 18 16 21 21 O 1.20743 * 112.75954 * 0.39492 * 20 19 18 22 22 C 1.34239 * 111.94736 * 359.74187 * 21 20 19 23 23 C 1.47548 * 127.17429 * 179.97438 * 22 21 20 24 24 C 1.39704 * 120.15968 * 52.91645 * 23 22 21 25 25 C 1.37928 * 119.84301 * 179.71969 * 24 23 22 26 26 C 1.38369 * 120.15651 * 0.55293 * 25 24 23 27 27 C 1.38383 * 120.31831 * 359.72207 * 26 25 24 28 28 C 1.37930 * 120.15887 * 359.97438 * 27 26 25 29 29 C 1.47424 * 108.70580 * 1.05870 * 15 14 13 30 30 H 0.97000 * 120.00083 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99652 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47103 * 300.00074 * 10 9 7 33 33 H 1.09008 * 109.47072 * 60.00074 * 10 9 7 34 34 H 1.08996 * 110.72479 * 324.78348 * 13 11 10 35 35 H 1.08996 * 110.72652 * 88.06506 * 13 11 10 36 36 H 1.09000 * 109.88479 * 262.77749 * 14 13 11 37 37 H 1.09000 * 110.01435 * 141.68099 * 14 13 11 38 38 H 1.08003 * 126.79725 * 0.03666 * 19 18 16 39 39 H 1.08005 * 120.07580 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.91655 * 180.29938 * 25 24 23 41 41 H 1.08002 * 119.84276 * 179.74160 * 26 25 24 42 42 H 1.08001 * 119.92187 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.07727 * 179.97438 * 28 27 26 44 44 H 1.08992 * 110.37195 * 217.03754 * 29 15 14 45 45 H 1.08994 * 110.45705 * 94.75507 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3950 -4.7586 0.8596 13 6 1.8032 -6.1834 -0.0328 14 6 0.7718 -7.1192 -0.6976 15 7 -0.1564 -6.2731 -1.4619 16 6 -1.2154 -6.7108 -2.1714 17 8 -1.9178 -5.9169 -2.7682 18 6 -1.5220 -8.1485 -2.2240 19 6 -0.8899 -9.2141 -1.5208 20 7 -1.4977 -10.3036 -1.8820 21 8 -2.3797 -10.1032 -2.6818 22 6 -2.4996 -8.8000 -2.9805 23 6 -3.4626 -8.1841 -3.9135 24 6 -4.8295 -8.4407 -3.7820 25 6 -5.7244 -7.8569 -4.6542 26 6 -5.2702 -7.0279 -5.6647 27 6 -3.9171 -6.7737 -5.8045 28 6 -3.0112 -7.3457 -4.9357 29 6 0.2635 -4.8666 -1.3243 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6848 -3.7145 -0.8894 33 1 2.6848 -3.7145 0.8906 34 1 2.7084 -6.1164 -0.6364 35 1 2.0359 -6.5213 0.9769 36 1 0.2257 -7.6718 0.0669 37 1 1.2768 -7.8148 -1.3679 38 1 -0.0693 -9.1320 -0.8234 39 1 -5.1851 -9.0914 -2.9967 40 1 -6.7818 -8.0505 -4.5507 41 1 -5.9750 -6.5767 -6.3474 42 1 -3.5696 -6.1254 -6.5952 43 1 -1.9554 -7.1468 -5.0463 44 1 -0.6079 -4.2147 -1.2644 45 1 0.8980 -4.5749 -2.1611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491842857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 78.649680 kcal Electronic energy + Delta-G solvation = -28793.039205 eV Core-core repulsion = 24779.537367 eV Total energy + Delta-G solvation = -4013.501838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.23747 -40.04993 -39.25841 -37.61280 -34.85104 -34.22284 -33.33215 -32.23284 -31.20092 -30.52810 -29.90935 -28.82470 -26.23875 -24.67332 -23.86374 -23.30416 -22.60964 -22.12919 -21.68950 -20.06574 -19.57642 -18.17262 -17.97359 -17.64415 -16.99620 -16.51650 -16.15300 -15.57619 -15.27188 -14.95252 -14.75637 -14.43066 -14.35734 -13.80602 -13.70998 -13.64352 -13.32906 -13.22794 -13.05863 -12.78865 -12.62242 -12.17602 -11.95121 -11.78511 -11.58685 -11.40729 -11.32819 -10.89210 -10.82732 -10.67520 -10.64160 -10.47256 -10.13561 -10.06591 -9.99475 -9.68915 -9.16811 -8.88784 -8.87491 -8.62295 -6.94414 -5.76387 -3.06180 0.34131 1.17917 1.25072 1.55301 2.45350 2.91274 3.10910 3.44152 3.48408 3.49784 3.50367 3.89458 4.16873 4.34168 4.49528 4.56185 4.60638 4.68570 4.70856 4.83113 4.85222 4.89747 4.96109 5.18921 5.23222 5.29614 5.35178 5.45275 5.53520 5.58054 5.60900 5.76572 5.81627 5.90981 5.94015 6.05933 6.12716 6.18139 6.19763 6.25782 6.35192 6.37757 6.65093 6.65459 6.78392 7.44324 7.68617 7.79132 8.09011 8.41618 9.52864 10.09338 10.43564 11.46093 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002619 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.921273 B =10689.234568 C =12532.522203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.125 4.125 14 C 0.092 3.908 15 N -0.609 5.609 16 C 0.603 3.397 17 O -0.519 6.519 18 C -0.236 4.236 19 C 0.017 3.983 20 N -0.363 5.363 21 O 0.111 5.889 22 C 0.084 3.916 23 C -0.037 4.037 24 C -0.084 4.084 25 C -0.126 4.126 26 C -0.097 4.097 27 C -0.120 4.120 28 C -0.047 4.047 29 C 0.119 3.881 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.206 0.794 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 -22.531 -7.706 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.164 4.164 14 C -0.031 4.031 15 N -0.342 5.342 16 C 0.391 3.609 17 O -0.396 6.396 18 C -0.243 4.243 19 C -0.162 4.162 20 N -0.067 5.067 21 O 0.049 5.951 22 C 0.018 3.982 23 C -0.038 4.038 24 C -0.103 4.103 25 C -0.144 4.144 26 C -0.115 4.115 27 C -0.138 4.138 28 C -0.066 4.066 29 C -0.002 4.002 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.223 0.777 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.105 0.895 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.350 -23.300 -7.738 25.359 hybrid contribution 0.416 1.700 0.235 1.766 sum -5.934 -21.600 -7.503 23.623 Atomic orbital electron populations 1.69648 1.05108 1.25854 1.57332 1.24753 0.95511 0.97723 1.02837 0.86268 0.78520 0.83554 0.77820 1.21678 1.21275 1.21257 1.19157 0.90975 0.84118 1.43214 0.91212 1.42357 1.05907 0.99910 1.89586 1.20584 0.92684 0.84773 0.98246 1.22602 0.97870 0.94785 0.97272 0.89617 1.22671 0.97690 0.94625 1.01375 1.22363 0.91404 0.94408 0.94931 1.48309 1.27176 1.09596 1.49152 1.16313 0.79985 0.85224 0.79362 1.90886 1.48643 1.55584 1.44510 1.21488 1.01849 0.96036 1.04897 1.25583 1.01874 0.87062 1.01666 1.73565 1.01949 1.24529 1.06644 1.84899 1.41135 1.24495 1.44598 1.23101 0.95731 0.83230 0.96112 1.17471 0.90744 1.00210 0.95367 1.21210 0.91362 0.98835 0.98865 1.21033 0.99679 0.98174 0.95549 1.21365 0.95799 0.96844 0.97520 1.21085 0.93100 0.99894 0.99752 1.21083 1.00415 0.93166 0.91925 1.22361 0.99778 0.80299 0.97788 0.93391 0.78179 0.95995 0.95760 0.90040 0.89740 0.91284 0.91201 0.77701 0.85458 0.85336 0.85546 0.85175 0.85608 0.89543 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.13 5.45 -59.91 -0.33 -18.45 16 10 C 0.17 3.10 5.71 -4.04 -0.02 3.07 16 11 C -0.11 -1.57 3.10 -88.47 -0.27 -1.84 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -1.30 6.42 -24.90 -0.16 -1.46 16 14 C 0.09 0.91 5.06 -3.06 -0.02 0.89 16 15 N -0.61 -8.38 3.33 -171.91 -0.57 -8.95 16 16 C 0.60 9.12 7.82 -12.67 -0.10 9.02 16 17 O -0.52 -9.49 14.85 5.23 0.08 -9.41 16 18 C -0.24 -2.99 6.26 -104.12 -0.65 -3.64 16 19 C 0.02 0.18 10.60 -16.75 -0.18 0.00 16 20 N -0.36 -4.25 11.98 30.84 0.37 -3.88 16 21 O 0.11 1.30 11.17 16.69 0.19 1.48 16 22 C 0.08 1.02 6.95 -35.23 -0.24 0.78 16 23 C -0.04 -0.43 5.32 -105.01 -0.56 -0.99 16 24 C -0.08 -0.84 9.79 -39.15 -0.38 -1.22 16 25 C -0.13 -1.09 10.03 -39.65 -0.40 -1.49 16 26 C -0.10 -0.85 10.04 -39.48 -0.40 -1.24 16 27 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 28 C -0.05 -0.55 8.10 -39.15 -0.32 -0.87 16 29 C 0.12 1.91 6.08 -2.53 -0.02 1.89 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.38 10.10 7.53 -40.82 -0.31 9.79 16 32 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 33 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 34 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.57 6.63 -51.93 -0.34 0.23 16 37 H 0.07 0.56 7.36 -51.93 -0.38 0.18 16 38 H 0.21 1.56 4.95 -52.48 -0.26 1.30 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.51 7.88 -52.49 -0.41 1.09 16 44 H 0.09 1.63 8.04 -51.93 -0.42 1.22 16 45 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -33.59 376.84 -9.13 -42.71 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.88 Total: 7.04 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.36 Total: -6.03 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.20 Total: -58.81 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.26 Total: -7.92 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.59 -9.13 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.365 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds