Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48504 * 109.46818 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47519 * 119.99862 * 3 2 1 6 6 H 1.48498 * 109.47102 * 240.00198 * 3 2 1 7 7 C 1.38817 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00161 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99951 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47018 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88855 * 302.57373 * 11 10 9 13 13 C 1.55156 * 111.00128 * 178.65351 * 11 10 9 14 14 C 1.54327 * 102.94125 * 206.42459 * 13 11 10 15 15 N 1.47024 * 107.26994 * 22.19233 * 14 13 11 16 16 C 1.34777 * 125.64731 * 181.02877 * 15 14 13 17 17 O 1.21652 * 119.99744 * 180.02562 * 16 15 14 18 18 C 1.47096 * 120.00162 * 0.03674 * 16 15 14 19 19 C 1.42463 * 128.38347 * 5.19659 * 18 16 15 20 20 N 1.29885 * 106.41018 * 179.89692 * 19 18 16 21 21 O 1.20743 * 112.75954 * 0.39492 * 20 19 18 22 22 C 1.34239 * 111.94736 * 359.74187 * 21 20 19 23 23 C 1.47548 * 127.17429 * 179.97438 * 22 21 20 24 24 C 1.39704 * 120.15968 * 52.91645 * 23 22 21 25 25 C 1.37928 * 119.84301 * 179.71969 * 24 23 22 26 26 C 1.38369 * 120.15651 * 0.55293 * 25 24 23 27 27 C 1.38383 * 120.31831 * 359.72207 * 26 25 24 28 28 C 1.37930 * 120.15887 * 359.97438 * 27 26 25 29 29 C 1.47424 * 108.70580 * 1.05870 * 15 14 13 30 30 H 0.97000 * 120.00083 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99652 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47103 * 300.00074 * 10 9 7 33 33 H 1.09008 * 109.47072 * 60.00074 * 10 9 7 34 34 H 1.08996 * 110.72479 * 324.78348 * 13 11 10 35 35 H 1.08996 * 110.72652 * 88.06506 * 13 11 10 36 36 H 1.09000 * 109.88479 * 262.77749 * 14 13 11 37 37 H 1.09000 * 110.01435 * 141.68099 * 14 13 11 38 38 H 1.08003 * 126.79725 * 0.03666 * 19 18 16 39 39 H 1.08005 * 120.07580 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.91655 * 180.29938 * 25 24 23 41 41 H 1.08002 * 119.84276 * 179.74160 * 26 25 24 42 42 H 1.08001 * 119.92187 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.07727 * 179.97438 * 28 27 26 44 44 H 1.08992 * 110.37195 * 217.03754 * 29 15 14 45 45 H 1.08994 * 110.45705 * 94.75507 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3950 -4.7586 0.8596 13 6 1.8032 -6.1834 -0.0328 14 6 0.7718 -7.1192 -0.6976 15 7 -0.1564 -6.2731 -1.4619 16 6 -1.2154 -6.7108 -2.1714 17 8 -1.9178 -5.9169 -2.7682 18 6 -1.5220 -8.1485 -2.2240 19 6 -0.8899 -9.2141 -1.5208 20 7 -1.4977 -10.3036 -1.8820 21 8 -2.3797 -10.1032 -2.6818 22 6 -2.4996 -8.8000 -2.9805 23 6 -3.4626 -8.1841 -3.9135 24 6 -4.8295 -8.4407 -3.7820 25 6 -5.7244 -7.8569 -4.6542 26 6 -5.2702 -7.0279 -5.6647 27 6 -3.9171 -6.7737 -5.8045 28 6 -3.0112 -7.3457 -4.9357 29 6 0.2635 -4.8666 -1.3243 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6848 -3.7145 -0.8894 33 1 2.6848 -3.7145 0.8906 34 1 2.7084 -6.1164 -0.6364 35 1 2.0359 -6.5213 0.9769 36 1 0.2257 -7.6718 0.0669 37 1 1.2768 -7.8148 -1.3679 38 1 -0.0693 -9.1320 -0.8234 39 1 -5.1851 -9.0914 -2.9967 40 1 -6.7818 -8.0505 -4.5507 41 1 -5.9750 -6.5767 -6.3474 42 1 -3.5696 -6.1254 -6.5952 43 1 -1.9554 -7.1468 -5.0463 44 1 -0.6079 -4.2147 -1.2644 45 1 0.8980 -4.5749 -2.1611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491842857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 58.086197 kcal Electronic energy + Delta-G solvation = -28793.930905 eV Core-core repulsion = 24779.537367 eV Total energy + Delta-G solvation = -4014.393538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.12053 -41.17447 -40.02746 -38.82113 -36.49080 -35.29585 -34.17946 -33.83792 -32.07398 -31.93976 -30.76346 -30.08216 -27.64068 -26.06559 -24.75440 -24.61763 -23.54841 -23.24038 -22.67504 -21.33598 -20.56132 -19.32938 -18.88224 -18.85821 -18.48889 -17.49359 -17.15844 -16.76750 -16.51185 -16.15260 -15.81885 -15.58975 -15.32118 -15.26546 -15.04453 -14.69124 -14.44356 -14.40353 -14.06373 -13.94980 -13.81269 -13.44137 -13.11780 -12.91565 -12.82238 -12.70000 -12.34110 -12.27968 -12.14473 -12.13837 -11.87711 -11.75631 -11.60817 -11.57376 -11.27616 -10.95559 -10.92232 -9.94044 -9.80484 -9.62766 -8.99326 -7.93998 -5.23276 -0.55897 0.38144 0.44195 0.67477 1.47350 1.48254 1.50705 1.56744 1.88875 2.01345 2.56606 2.73163 3.03374 3.28904 3.38831 3.40405 3.53119 3.61616 3.82231 3.88638 3.94445 4.00207 4.04838 4.21719 4.22902 4.24663 4.41161 4.47614 4.54250 4.55409 4.61299 4.69013 4.79766 4.84849 4.86915 5.01393 5.03477 5.05590 5.17562 5.24241 5.36576 5.42151 5.43685 5.50775 5.51362 5.93659 6.27495 6.35817 6.87611 6.96548 7.33742 8.10458 8.31543 9.29396 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002619 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.921273 B =10689.234568 C =12532.522203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.298 1.298 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.098 4.098 12 H 0.078 0.922 13 C -0.111 4.111 14 C 0.085 3.915 15 N -0.607 5.607 16 C 0.599 3.401 17 O -0.564 6.564 18 C -0.255 4.255 19 C 0.037 3.963 20 N -0.374 5.374 21 O 0.107 5.893 22 C 0.092 3.908 23 C -0.061 4.061 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.133 4.133 28 C -0.068 4.068 29 C 0.125 3.875 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.143 0.857 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.045 0.955 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -24.457 -7.168 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.224 1.224 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.036 4.036 15 N -0.340 5.340 16 C 0.388 3.612 17 O -0.444 6.444 18 C -0.262 4.262 19 C -0.142 4.142 20 N -0.080 5.080 21 O 0.048 5.952 22 C 0.026 3.974 23 C -0.063 4.063 24 C -0.110 4.110 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.151 4.151 28 C -0.087 4.087 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.254 0.746 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.405 -25.294 -7.193 26.846 hybrid contribution 0.134 2.251 0.023 2.255 sum -5.271 -23.043 -7.170 24.701 Atomic orbital electron populations 1.69826 1.06753 1.26091 1.59541 1.25604 0.96341 1.01283 1.03797 0.85204 0.77152 0.79092 0.78271 1.22449 1.20106 1.20395 1.19628 0.91609 0.85311 1.41117 0.90261 1.42628 1.05620 1.01422 1.89481 1.20777 0.93317 0.83694 0.98538 1.22425 0.97265 0.96114 0.95906 0.90360 1.22692 0.97501 0.91172 1.03517 1.22722 0.90932 0.94261 0.95730 1.48330 1.27448 1.09087 1.49112 1.16652 0.79721 0.85997 0.78784 1.90855 1.50251 1.56887 1.46408 1.21294 1.03277 0.95063 1.06574 1.25972 1.01686 0.85625 1.00899 1.73563 1.02345 1.24934 1.07151 1.84905 1.41393 1.24065 1.44846 1.23288 0.95304 0.83400 0.95442 1.17685 0.91716 1.01055 0.95803 1.21500 0.90775 0.99125 0.99586 1.21446 1.01030 0.97164 0.94664 1.21751 0.95583 0.96274 0.97792 1.21350 0.93823 1.00057 0.99887 1.21106 1.00145 0.94305 0.93104 1.22075 0.98050 0.81372 0.98284 0.94120 0.79672 0.95541 0.94646 0.88940 0.86756 0.88729 0.88356 0.74556 0.83927 0.82290 0.82696 0.84001 0.87166 0.93669 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 4 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -37.68 5.45 -343.45 -1.87 -39.56 16 10 C 0.16 6.01 5.71 86.38 0.49 6.50 16 11 C -0.10 -2.81 3.10 -9.40 -0.03 -2.84 16 12 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.11 -1.91 6.42 31.78 0.20 -1.71 16 14 C 0.08 1.39 5.06 86.73 0.44 1.83 16 15 N -0.61 -16.48 3.33 -816.03 -2.71 -19.20 16 16 C 0.60 18.51 7.82 86.57 0.68 19.19 16 17 O -0.56 -21.93 14.85 -4.19 -0.06 -21.99 16 18 C -0.25 -6.36 6.26 -19.54 -0.12 -6.49 16 19 C 0.04 0.70 10.60 86.03 0.91 1.62 16 20 N -0.37 -8.10 11.98 -56.89 -0.68 -8.78 16 21 O 0.11 2.42 11.17 69.96 0.78 3.20 16 22 C 0.09 2.24 6.95 25.09 0.17 2.42 16 23 C -0.06 -1.48 5.32 -20.11 -0.11 -1.58 16 24 C -0.09 -1.77 9.79 22.55 0.22 -1.54 16 25 C -0.13 -1.96 10.03 22.23 0.22 -1.74 16 26 C -0.10 -1.56 10.04 22.34 0.22 -1.34 16 27 C -0.13 -2.72 10.03 22.23 0.22 -2.50 16 28 C -0.07 -1.69 8.10 22.55 0.18 -1.51 16 29 C 0.12 4.14 6.08 86.86 0.53 4.67 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 20.35 7.53 -92.71 -0.70 19.66 16 32 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 33 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.13 6.63 -2.39 -0.02 1.12 16 37 H 0.10 1.14 7.36 -2.39 -0.02 1.13 16 38 H 0.24 2.60 4.95 -2.91 -0.01 2.59 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.11 2.94 7.88 -2.91 -0.02 2.92 16 44 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 45 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16 Total: -1.00 -76.48 376.84 3.64 -72.84 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.33 Total: 27.36 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.55 Total: -1.88 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -4.99 Total: -127.96 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.72 Total: -18.79 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.48 3.64 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.926 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds