Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00349 * 2 1 4 4 H 1.48502 * 109.47031 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47028 * 120.00076 * 3 2 1 7 7 C 1.38815 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00433 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00292 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46830 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88729 * 57.43371 * 11 10 9 13 13 C 1.55164 * 111.03520 * 181.32966 * 11 10 9 14 14 C 1.54332 * 103.01962 * 153.39701 * 13 11 10 15 15 N 1.47024 * 107.26495 * 338.14273 * 14 13 11 16 16 C 1.34779 * 125.64731 * 178.85308 * 15 14 13 17 17 O 1.21609 * 120.00245 * 179.69524 * 16 15 14 18 18 C 1.47465 * 120.00139 * 359.68514 * 16 15 14 19 19 C 1.36227 * 126.36627 * 180.02562 * 18 16 15 20 20 O 1.34278 * 107.12285 * 180.02562 * 19 18 16 21 21 C 1.34482 * 108.17037 * 0.02562 * 20 19 18 22 22 C 1.47865 * 125.48874 * 179.97438 * 21 20 19 23 23 C 1.39557 * 120.14001 * 180.27184 * 22 21 20 24 24 C 1.37966 * 119.85351 * 180.29931 * 23 22 21 25 25 C 1.38351 * 120.14373 * 359.44765 * 24 23 22 26 26 C 1.38356 * 120.28683 * 0.27967 * 25 24 23 27 27 C 1.37968 * 120.14194 * 359.97438 * 26 25 24 28 28 N 1.30891 * 109.01513 * 0.23854 * 21 20 19 29 29 C 1.47424 * 108.70381 * 358.58468 * 15 14 13 30 30 H 0.96998 * 119.99703 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99609 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47118 * 59.99901 * 10 9 7 33 33 H 1.08994 * 109.47034 * 299.99540 * 10 9 7 34 34 H 1.08987 * 110.72139 * 271.95888 * 13 11 10 35 35 H 1.09005 * 110.71644 * 35.05265 * 13 11 10 36 36 H 1.09003 * 109.99158 * 218.67052 * 14 13 11 37 37 H 1.08996 * 109.78078 * 97.49548 * 14 13 11 38 38 H 1.07995 * 126.44212 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.07113 * 0.04288 * 23 22 21 40 40 H 1.08002 * 119.93050 * 179.73227 * 24 23 22 41 41 H 1.07996 * 119.85851 * 180.25898 * 25 24 23 42 42 H 1.08002 * 119.92821 * 180.02562 * 26 25 24 43 43 H 1.07994 * 120.06875 * 179.97438 * 27 26 25 44 44 H 1.09002 * 110.36266 * 143.19597 * 29 15 14 45 45 H 1.09000 * 110.36909 * 265.40409 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3941 -4.7590 -0.8568 13 6 1.8020 -6.1840 0.0348 14 6 0.7737 -7.1195 0.7049 15 7 -0.1566 -6.2722 1.4653 16 6 -1.2153 -6.7091 2.1758 17 8 -1.9164 -5.9150 2.7730 18 6 -1.5236 -8.1502 2.2288 19 6 -2.5553 -8.7312 2.9025 20 8 -2.4719 -10.0542 2.6885 21 6 -1.4085 -10.2851 1.8983 22 6 -0.9632 -11.6131 1.4246 23 6 0.1641 -11.7246 0.6095 24 6 0.5707 -12.9661 0.1658 25 6 -0.1297 -14.1001 0.5366 26 6 -1.2447 -13.9970 1.3492 27 6 -1.6649 -12.7609 1.7954 28 7 -0.8280 -9.1452 1.6207 29 6 0.2642 -4.8660 1.3272 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6846 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 2.0338 -6.5220 -0.9751 35 1 2.7094 -6.1166 0.6352 36 1 1.2814 -7.8098 1.3786 37 1 0.2291 -7.6759 -0.0580 38 1 -3.3003 -8.2233 3.4969 39 1 0.7144 -10.8406 0.3232 40 1 1.4404 -13.0533 -0.4686 41 1 0.1952 -15.0700 0.1901 42 1 -1.7869 -14.8861 1.6354 43 1 -2.5357 -12.6818 2.4292 44 1 -0.6070 -4.2135 1.2680 45 1 0.8984 -4.5758 2.1648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491846979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 34.428179 kcal Electronic energy + Delta-G solvation = -28173.836812 eV Core-core repulsion = 24158.417386 eV Total energy + Delta-G solvation = -4015.419427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.68852 -39.84203 -39.47331 -37.56126 -35.25205 -34.56207 -32.82333 -32.13948 -31.46616 -30.37830 -29.51708 -28.61234 -26.01882 -24.45357 -24.04761 -23.28882 -22.47833 -21.86765 -21.48873 -20.03722 -19.69310 -18.12331 -17.36869 -17.16130 -16.91880 -16.59497 -16.16743 -15.93260 -15.44036 -15.14326 -14.66853 -14.44889 -14.21026 -13.94275 -13.84056 -13.56661 -13.39814 -13.35650 -13.13388 -12.64601 -12.57222 -12.16331 -11.98353 -11.71335 -11.67877 -11.60281 -11.28753 -10.98271 -10.81318 -10.57668 -10.54956 -10.36369 -10.18748 -10.14329 -9.99973 -9.64052 -9.48752 -8.84505 -8.77754 -8.45716 -6.89599 -5.72346 -3.01766 0.19439 0.87800 1.05833 1.98034 2.14578 2.91390 3.19626 3.37130 3.43906 3.47105 3.51116 3.52590 4.31500 4.36579 4.45320 4.56340 4.60657 4.62131 4.79182 4.88221 4.94176 4.97915 5.09857 5.11210 5.30543 5.36750 5.45490 5.50898 5.53405 5.62429 5.67542 5.86479 5.89533 5.93776 5.95164 5.98466 6.03347 6.12042 6.15424 6.30818 6.36932 6.42641 6.48550 6.72410 6.86587 7.13803 7.56597 7.72598 8.12532 8.45897 9.56936 10.14147 10.48553 11.50268 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002024 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.042966 B =13832.783955 C =14897.979870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.128 4.128 14 C 0.114 3.886 15 N -0.600 5.600 16 C 0.609 3.391 17 O -0.534 6.534 18 C -0.056 4.056 19 C 0.015 3.985 20 O -0.191 6.191 21 C 0.232 3.768 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.089 4.089 28 N -0.441 5.441 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -32.858 2.384 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.332 5.332 16 C 0.396 3.604 17 O -0.412 6.412 18 C -0.178 4.178 19 C -0.058 4.058 20 O -0.077 6.077 21 C 0.027 3.973 22 C -0.020 4.020 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.109 4.109 28 N -0.171 5.171 29 C -0.005 4.005 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.104 0.896 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.705 -32.241 2.383 32.374 hybrid contribution -0.516 0.940 0.462 1.168 sum -2.221 -31.300 2.844 31.508 Atomic orbital electron populations 1.69653 1.05099 1.25792 1.57480 1.24757 0.95523 0.97719 1.02966 0.86258 0.78494 0.83563 0.77795 1.21308 1.21711 1.21279 1.19168 0.90981 0.84140 1.42991 0.91209 1.42367 1.05913 0.99931 1.89550 1.20588 0.92721 0.84764 0.98203 1.22581 0.97861 0.94907 0.97100 0.89723 1.22717 0.97941 0.94732 1.01285 1.22058 0.90631 0.92964 0.95206 1.48313 1.26861 1.09679 1.48321 1.16313 0.80244 0.84459 0.79371 1.90864 1.49791 1.54923 1.45585 1.21793 0.97283 0.95087 1.03618 1.25388 1.00760 0.79053 1.00638 1.84418 1.43225 1.26096 1.53956 1.23820 0.85105 0.94819 0.93557 1.17282 0.97721 0.85820 1.01145 1.21236 0.94176 0.98835 0.94566 1.21162 1.00475 0.91858 1.00352 1.21407 0.94892 0.98995 0.96630 1.21094 0.97303 0.97228 0.98359 1.21252 0.99257 0.91525 0.98833 1.71089 1.27315 0.97049 1.21656 1.22393 0.99753 0.80457 0.97900 0.93433 0.78197 0.96017 0.95758 0.90020 0.90441 0.91116 0.90984 0.74921 0.84194 0.84901 0.85406 0.85175 0.85090 0.89632 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.68 5.45 -59.91 -0.33 -19.01 16 10 C 0.17 3.26 5.71 -4.04 -0.02 3.24 16 11 C -0.10 -1.70 3.11 -88.47 -0.27 -1.98 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.58 6.42 -24.89 -0.16 -1.74 16 14 C 0.11 1.45 5.53 -3.06 -0.02 1.43 16 15 N -0.60 -9.44 3.33 -171.76 -0.57 -10.01 16 16 C 0.61 10.03 7.85 -12.50 -0.10 9.93 16 17 O -0.53 -10.34 17.14 5.27 0.09 -10.25 16 18 C -0.06 -0.76 6.82 -83.08 -0.57 -1.33 16 19 C 0.02 0.16 11.94 30.01 0.36 0.52 16 20 O -0.19 -1.97 10.45 5.29 0.06 -1.91 16 21 C 0.23 2.50 7.88 -14.01 -0.11 2.39 16 22 C -0.02 -0.16 5.87 -104.98 -0.62 -0.78 16 23 C -0.07 -0.52 9.68 -39.19 -0.38 -0.90 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.10 -0.50 10.04 -39.50 -0.40 -0.89 16 26 C -0.12 -0.64 10.03 -39.64 -0.40 -1.04 16 27 C -0.09 -0.61 9.71 -39.19 -0.38 -0.99 16 28 N -0.44 -5.44 8.43 -8.26 -0.07 -5.51 16 29 C 0.12 2.03 6.08 -2.53 -0.02 2.02 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.38 10.38 7.53 -40.82 -0.31 10.07 16 32 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.86 8.14 -51.94 -0.42 0.44 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 37 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 38 H 0.23 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.14 1.05 7.82 -52.49 -0.41 0.64 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.13 0.75 7.89 -52.49 -0.41 0.34 16 44 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 45 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -34.59 384.53 -9.16 -43.75 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.11 Total: 6.13 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.72 Total: 1.34 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.24 Total: -62.55 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.15 Total: -12.17 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.59 -9.16 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491846979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.176 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds