Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00349 * 2 1 4 4 H 1.48502 * 109.47031 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47028 * 120.00076 * 3 2 1 7 7 C 1.38815 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00433 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00292 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46830 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88729 * 57.43371 * 11 10 9 13 13 C 1.55164 * 111.03520 * 181.32966 * 11 10 9 14 14 C 1.54332 * 103.01962 * 153.39701 * 13 11 10 15 15 N 1.47024 * 107.26495 * 338.14273 * 14 13 11 16 16 C 1.34779 * 125.64731 * 178.85308 * 15 14 13 17 17 O 1.21609 * 120.00245 * 179.69524 * 16 15 14 18 18 C 1.47465 * 120.00139 * 359.68514 * 16 15 14 19 19 C 1.36227 * 126.36627 * 180.02562 * 18 16 15 20 20 O 1.34278 * 107.12285 * 180.02562 * 19 18 16 21 21 C 1.34482 * 108.17037 * 0.02562 * 20 19 18 22 22 C 1.47865 * 125.48874 * 179.97438 * 21 20 19 23 23 C 1.39557 * 120.14001 * 180.27184 * 22 21 20 24 24 C 1.37966 * 119.85351 * 180.29931 * 23 22 21 25 25 C 1.38351 * 120.14373 * 359.44765 * 24 23 22 26 26 C 1.38356 * 120.28683 * 0.27967 * 25 24 23 27 27 C 1.37968 * 120.14194 * 359.97438 * 26 25 24 28 28 N 1.30891 * 109.01513 * 0.23854 * 21 20 19 29 29 C 1.47424 * 108.70381 * 358.58468 * 15 14 13 30 30 H 0.96998 * 119.99703 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99609 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47118 * 59.99901 * 10 9 7 33 33 H 1.08994 * 109.47034 * 299.99540 * 10 9 7 34 34 H 1.08987 * 110.72139 * 271.95888 * 13 11 10 35 35 H 1.09005 * 110.71644 * 35.05265 * 13 11 10 36 36 H 1.09003 * 109.99158 * 218.67052 * 14 13 11 37 37 H 1.08996 * 109.78078 * 97.49548 * 14 13 11 38 38 H 1.07995 * 126.44212 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.07113 * 0.04288 * 23 22 21 40 40 H 1.08002 * 119.93050 * 179.73227 * 24 23 22 41 41 H 1.07996 * 119.85851 * 180.25898 * 25 24 23 42 42 H 1.08002 * 119.92821 * 180.02562 * 26 25 24 43 43 H 1.07994 * 120.06875 * 179.97438 * 27 26 25 44 44 H 1.09002 * 110.36266 * 143.19597 * 29 15 14 45 45 H 1.09000 * 110.36909 * 265.40409 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3941 -4.7590 -0.8568 13 6 1.8020 -6.1840 0.0348 14 6 0.7737 -7.1195 0.7049 15 7 -0.1566 -6.2722 1.4653 16 6 -1.2153 -6.7091 2.1758 17 8 -1.9164 -5.9150 2.7730 18 6 -1.5236 -8.1502 2.2288 19 6 -2.5553 -8.7312 2.9025 20 8 -2.4719 -10.0542 2.6885 21 6 -1.4085 -10.2851 1.8983 22 6 -0.9632 -11.6131 1.4246 23 6 0.1641 -11.7246 0.6095 24 6 0.5707 -12.9661 0.1658 25 6 -0.1297 -14.1001 0.5366 26 6 -1.2447 -13.9970 1.3492 27 6 -1.6649 -12.7609 1.7954 28 7 -0.8280 -9.1452 1.6207 29 6 0.2642 -4.8660 1.3272 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6846 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 2.0338 -6.5220 -0.9751 35 1 2.7094 -6.1166 0.6352 36 1 1.2814 -7.8098 1.3786 37 1 0.2291 -7.6759 -0.0580 38 1 -3.3003 -8.2233 3.4969 39 1 0.7144 -10.8406 0.3232 40 1 1.4404 -13.0533 -0.4686 41 1 0.1952 -15.0700 0.1901 42 1 -1.7869 -14.8861 1.6354 43 1 -2.5357 -12.6818 2.4292 44 1 -0.6070 -4.2135 1.2680 45 1 0.8984 -4.5758 2.1648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491846979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 11.350690 kcal Electronic energy + Delta-G solvation = -28174.837527 eV Core-core repulsion = 24158.417386 eV Total energy + Delta-G solvation = -4016.420142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.54974 -41.10646 -39.94203 -38.91354 -36.51082 -36.04263 -33.94401 -33.39244 -32.05181 -31.88652 -30.32281 -29.97994 -27.55757 -25.77271 -24.92415 -24.38114 -23.48363 -23.04577 -22.22225 -21.36928 -20.74551 -19.33485 -18.82712 -18.14246 -18.01865 -17.44353 -17.35141 -16.75272 -16.53988 -16.37742 -15.93862 -15.65401 -15.31031 -15.12721 -14.80900 -14.67919 -14.59802 -14.35567 -14.11053 -13.90272 -13.89077 -13.54084 -13.14001 -13.01787 -12.70367 -12.58368 -12.40320 -12.34838 -12.17252 -12.08117 -11.94539 -11.81162 -11.62749 -11.55297 -11.42995 -10.92801 -10.90860 -9.92579 -9.83130 -9.37045 -8.99964 -7.94013 -5.23587 -0.43642 0.14537 0.44514 1.19566 1.34328 1.47065 1.50877 1.56923 1.74360 2.07469 2.55979 2.58747 2.86314 3.29366 3.39629 3.61502 3.63217 3.65186 3.86285 4.00007 4.04328 4.16969 4.20227 4.31011 4.34235 4.42778 4.44475 4.49370 4.57033 4.60686 4.66212 4.72073 4.82292 4.89024 4.94130 4.99569 5.06632 5.11133 5.16868 5.23495 5.39890 5.41186 5.49552 5.50357 5.56364 5.96265 6.22315 6.27277 6.37377 6.86050 7.33334 8.09385 8.31389 9.29476 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002024 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.042966 B =13832.783955 C =14897.979870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.113 4.113 14 C 0.119 3.881 15 N -0.602 5.602 16 C 0.604 3.396 17 O -0.576 6.576 18 C -0.087 4.087 19 C 0.035 3.965 20 O -0.186 6.186 21 C 0.239 3.761 22 C -0.046 4.046 23 C -0.080 4.080 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.123 4.123 27 C -0.094 4.094 28 N -0.456 5.456 29 C 0.121 3.879 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.259 0.741 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.049 0.951 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -36.058 1.784 36.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.003 4.003 15 N -0.333 5.333 16 C 0.393 3.607 17 O -0.457 6.457 18 C -0.208 4.208 19 C -0.039 4.039 20 O -0.072 6.072 21 C 0.033 3.967 22 C -0.048 4.048 23 C -0.099 4.099 24 C -0.141 4.141 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.114 4.114 28 N -0.185 5.185 29 C -0.002 4.002 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.275 0.725 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.155 0.845 44 H 0.068 0.932 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.070 -35.491 1.762 35.535 hybrid contribution -0.981 1.721 0.644 2.083 sum -1.051 -33.770 2.406 33.872 Atomic orbital electron populations 1.69834 1.06780 1.26109 1.59548 1.25639 0.96393 1.01376 1.03799 0.85165 0.77110 0.78930 0.78275 1.20070 1.22413 1.20378 1.19639 0.91639 0.85256 1.41114 0.90199 1.42623 1.05615 1.01378 1.89486 1.20754 0.93211 0.83592 0.98599 1.22403 0.97283 0.95974 0.95813 0.90439 1.22725 0.97615 0.91528 1.03229 1.22177 0.90166 0.92696 0.95211 1.48405 1.27288 1.09218 1.48436 1.16746 0.79747 0.85611 0.78594 1.90823 1.51150 1.56361 1.47348 1.21454 0.99277 0.93799 1.06230 1.25835 0.99894 0.79057 0.99102 1.84455 1.43182 1.25680 1.53890 1.24337 0.84493 0.95295 0.92569 1.17469 0.99100 0.85269 1.02924 1.21334 0.94072 0.99664 0.94853 1.21454 1.01126 0.91300 1.00249 1.21812 0.94107 0.99978 0.95395 1.21441 0.97446 0.97385 0.97770 1.21436 0.99364 0.91658 0.98922 1.71012 1.27864 0.97215 1.22455 1.22155 0.98287 0.81285 0.98431 0.94108 0.79673 0.95503 0.94529 0.87182 0.89141 0.89999 0.90325 0.72493 0.84741 0.82856 0.82612 0.82681 0.84466 0.93223 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.24 -13.90 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -38.86 5.45 -343.45 -1.87 -40.73 16 10 C 0.16 6.44 5.71 86.38 0.49 6.94 16 11 C -0.10 -3.07 3.11 -9.40 -0.03 -3.10 16 12 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 13 C -0.11 -2.54 6.42 31.79 0.20 -2.34 16 14 C 0.12 2.90 5.53 86.73 0.48 3.38 16 15 N -0.60 -19.48 3.33 -815.59 -2.71 -22.19 16 16 C 0.60 20.72 7.85 86.67 0.68 21.40 16 17 O -0.58 -23.63 17.14 -4.06 -0.07 -23.70 16 18 C -0.09 -2.39 6.82 40.50 0.28 -2.11 16 19 C 0.04 0.75 11.94 67.35 0.80 1.55 16 20 O -0.19 -3.69 10.45 -3.99 -0.04 -3.73 16 21 C 0.24 5.01 7.88 87.38 0.69 5.70 16 22 C -0.05 -0.75 5.87 -20.10 -0.12 -0.87 16 23 C -0.08 -1.10 9.68 22.52 0.22 -0.88 16 24 C -0.12 -1.08 10.03 22.23 0.22 -0.86 16 25 C -0.09 -0.61 10.04 22.32 0.22 -0.39 16 26 C -0.12 -0.92 10.03 22.23 0.22 -0.70 16 27 C -0.09 -1.12 9.71 22.52 0.22 -0.90 16 28 N -0.46 -11.13 8.43 -294.26 -2.48 -13.61 16 29 C 0.12 4.42 6.08 86.85 0.53 4.95 16 30 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.37 20.93 7.53 -92.71 -0.70 20.24 16 32 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.86 8.04 -2.38 -0.02 1.84 16 36 H 0.08 1.85 7.75 -2.39 -0.02 1.84 16 37 H 0.08 1.84 7.63 -2.39 -0.02 1.83 16 38 H 0.26 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.13 1.90 7.82 -2.91 -0.02 1.88 16 40 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 42 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.14 1.36 7.89 -2.91 -0.02 1.33 16 44 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 45 H 0.06 2.44 8.01 -2.39 -0.02 2.42 16 Total: -1.00 -77.38 384.53 1.87 -75.51 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.32 Total: 26.22 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.42 Total: 14.43 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -6.78 Total: -137.95 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.11 Total: -27.42 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -77.38 1.87 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491846979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.864 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds