Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47043 * 239.99316 * 3 2 1 5 5 H 1.48499 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46883 * 119.99382 * 3 2 1 7 7 C 1.38811 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00033 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47284 * 179.97438 * 10 9 7 12 12 H 1.08992 * 110.89059 * 302.57354 * 11 10 9 13 13 C 1.55164 * 111.00141 * 178.64949 * 11 10 9 14 14 C 1.54330 * 102.94081 * 206.42304 * 13 11 10 15 15 N 1.47026 * 107.26840 * 22.19556 * 14 13 11 16 16 C 1.34776 * 125.64607 * 181.09447 * 15 14 13 17 17 O 1.21606 * 119.99944 * 179.97438 * 16 15 14 18 18 C 1.47466 * 119.99727 * 359.97227 * 16 15 14 19 19 C 1.36241 * 126.36126 * 179.97438 * 18 16 15 20 20 O 1.34278 * 107.11924 * 179.97438 * 19 18 16 21 21 C 1.34478 * 108.17115 * 0.02562 * 20 19 18 22 22 C 1.47875 * 125.48866 * 180.02562 * 21 20 19 23 23 C 1.39540 * 120.14127 * 179.70034 * 22 21 20 24 24 C 1.37971 * 119.85437 * 179.77292 * 23 22 21 25 25 C 1.38346 * 120.14178 * 0.50147 * 24 23 22 26 26 C 1.38354 * 120.28849 * 359.74911 * 25 24 23 27 27 C 1.37968 * 120.14120 * 359.97438 * 26 25 24 28 28 N 1.30892 * 109.01817 * 359.75763 * 21 20 19 29 29 C 1.47422 * 108.70500 * 1.05856 * 15 14 13 30 30 H 0.96997 * 120.00361 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00372 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47090 * 59.99974 * 10 9 7 33 33 H 1.09004 * 109.47045 * 300.00192 * 10 9 7 34 34 H 1.08999 * 110.71932 * 88.06637 * 13 11 10 35 35 H 1.08995 * 110.72046 * 324.78892 * 13 11 10 36 36 H 1.08998 * 109.88224 * 262.77875 * 14 13 11 37 37 H 1.08998 * 109.88221 * 141.61268 * 14 13 11 38 38 H 1.08000 * 126.43600 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.07459 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.92851 * 180.24943 * 24 23 22 41 41 H 1.08002 * 119.85823 * 179.77107 * 25 24 23 42 42 H 1.07996 * 119.92872 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.07015 * 179.97438 * 27 26 25 44 44 H 1.08996 * 110.36785 * 94.70778 * 29 15 14 45 45 H 1.09004 * 110.36699 * 216.92190 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 0.0012 12 1 0.3950 -4.7586 0.8595 13 6 1.8033 -6.1834 -0.0329 14 6 0.7718 -7.1192 -0.6977 15 7 -0.1564 -6.2730 -1.4620 16 6 -1.2162 -6.7106 -2.1704 17 8 -1.9188 -5.9169 -2.7663 18 6 -1.5235 -8.1519 -2.2230 19 6 -2.5563 -8.7336 -2.8947 20 8 -2.4716 -10.0566 -2.6810 21 6 -1.4072 -10.2866 -1.8920 22 6 -0.9602 -11.6145 -1.4190 23 6 0.1682 -11.7252 -0.6056 24 6 0.5773 -12.9666 -0.1638 25 6 -0.1227 -14.1010 -0.5339 26 6 -1.2393 -13.9986 -1.3444 27 6 -1.6621 -12.7626 -1.7884 28 7 -0.8272 -9.1464 -1.6149 29 6 0.2635 -4.8666 -1.3243 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8905 33 1 2.6848 -3.7145 -0.8895 34 1 2.0359 -6.5213 0.9769 35 1 2.7084 -6.1163 -0.6365 36 1 0.2257 -7.6717 0.0669 37 1 1.2787 -7.8130 -1.3683 38 1 -3.3023 -8.2261 -3.4882 39 1 0.7183 -10.8408 -0.3199 40 1 1.4481 -13.0533 0.4691 41 1 0.2037 -15.0709 -0.1885 42 1 -1.7811 -14.8881 -1.6302 43 1 -2.5336 -12.6840 -2.4213 44 1 0.8986 -4.5767 -2.1614 45 1 -0.6079 -4.2144 -1.2665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491846980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = 34.465973 kcal Electronic energy + Delta-G solvation = -28174.110490 eV Core-core repulsion = 24158.692702 eV Total energy + Delta-G solvation = -4015.417788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.68842 -39.84349 -39.47415 -37.56299 -35.25259 -34.56242 -32.82310 -32.13951 -31.46609 -30.37841 -29.51665 -28.61165 -26.01894 -24.45288 -24.04680 -23.28845 -22.47846 -21.86627 -21.48878 -20.03868 -19.69199 -18.12394 -17.36874 -17.16148 -16.91978 -16.59587 -16.16781 -15.93260 -15.43920 -15.14202 -14.66995 -14.44999 -14.21030 -13.94270 -13.83958 -13.56760 -13.39840 -13.35666 -13.13225 -12.64383 -12.57269 -12.16179 -11.98303 -11.71638 -11.67858 -11.60413 -11.28628 -10.98298 -10.81305 -10.57696 -10.54704 -10.36723 -10.18712 -10.14357 -10.00004 -9.64002 -9.48739 -8.84531 -8.77747 -8.45671 -6.89598 -5.72284 -3.01734 0.19474 0.87781 1.05824 1.98041 2.14550 2.91402 3.19652 3.37149 3.43897 3.47110 3.51132 3.52590 4.31514 4.36559 4.45329 4.56318 4.60644 4.62132 4.79056 4.88223 4.94261 4.97921 5.09900 5.11371 5.30532 5.36752 5.45391 5.50891 5.53450 5.62447 5.67636 5.86422 5.89541 5.93728 5.94943 5.98469 6.03368 6.11968 6.15526 6.30942 6.36933 6.42601 6.48494 6.72360 6.86607 7.13825 7.56620 7.72582 8.12547 8.45881 9.56960 10.14155 10.48607 11.50311 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002024 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.889198 B =13832.777167 C =14898.437265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.128 4.128 14 C 0.114 3.886 15 N -0.600 5.600 16 C 0.609 3.391 17 O -0.534 6.534 18 C -0.056 4.056 19 C 0.015 3.985 20 O -0.191 6.191 21 C 0.232 3.768 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.089 4.089 28 N -0.441 5.441 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 -32.863 -2.367 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.332 5.332 16 C 0.396 3.604 17 O -0.412 6.412 18 C -0.178 4.178 19 C -0.058 4.058 20 O -0.077 6.077 21 C 0.027 3.973 22 C -0.020 4.020 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.109 4.109 28 N -0.171 5.171 29 C -0.005 4.005 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.696 -32.245 -2.367 32.376 hybrid contribution -0.519 0.941 -0.461 1.169 sum -2.215 -31.304 -2.828 31.510 Atomic orbital electron populations 1.69651 1.05097 1.25796 1.57489 1.24757 0.95520 0.97714 1.02969 0.86261 0.78495 0.83571 0.77795 1.21284 1.21711 1.21302 1.19165 0.90983 0.84143 1.42983 0.91208 1.42365 1.05912 0.99931 1.89547 1.20590 0.92723 0.84767 0.98204 1.22583 0.97849 0.94922 0.97112 0.89720 1.22722 0.97919 0.94721 1.01305 1.22061 0.90654 0.92991 0.95169 1.48313 1.26877 1.09699 1.48286 1.16312 0.80226 0.84457 0.79392 1.90863 1.49704 1.54953 1.45642 1.21796 0.97249 0.95092 1.03645 1.25394 1.00754 0.79050 1.00650 1.84417 1.43168 1.26104 1.53999 1.23822 0.85098 0.94815 0.93572 1.17281 0.97692 0.85823 1.01167 1.21233 0.94166 0.98840 0.94576 1.21162 1.00473 0.91854 1.00356 1.21406 0.94895 0.98994 0.96631 1.21093 0.97281 0.97229 0.98380 1.21254 0.99260 0.91522 0.98835 1.71086 1.27341 0.97053 1.21626 1.22395 0.99749 0.80448 0.97914 0.93431 0.78196 0.95764 0.96009 0.90015 0.90408 0.90991 0.91115 0.74917 0.84194 0.84901 0.85405 0.85176 0.85089 0.90739 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.68 5.45 -59.91 -0.33 -19.01 16 10 C 0.17 3.26 5.71 -4.04 -0.02 3.24 16 11 C -0.11 -1.70 3.11 -88.47 -0.27 -1.98 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.58 6.42 -24.89 -0.16 -1.74 16 14 C 0.11 1.44 5.52 -3.06 -0.02 1.43 16 15 N -0.60 -9.44 3.33 -171.77 -0.57 -10.01 16 16 C 0.61 10.03 7.85 -12.50 -0.10 9.93 16 17 O -0.53 -10.34 17.14 5.27 0.09 -10.25 16 18 C -0.06 -0.76 6.82 -83.08 -0.57 -1.33 16 19 C 0.02 0.16 11.94 30.01 0.36 0.52 16 20 O -0.19 -1.97 10.45 5.30 0.06 -1.91 16 21 C 0.23 2.50 7.88 -14.01 -0.11 2.39 16 22 C -0.02 -0.16 5.87 -104.98 -0.62 -0.78 16 23 C -0.07 -0.52 9.68 -39.19 -0.38 -0.90 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.10 -0.50 10.04 -39.50 -0.40 -0.89 16 26 C -0.12 -0.64 10.03 -39.64 -0.40 -1.04 16 27 C -0.09 -0.61 9.71 -39.19 -0.38 -0.99 16 28 N -0.44 -5.44 8.43 -8.26 -0.07 -5.51 16 29 C 0.12 2.03 6.08 -2.53 -0.02 2.01 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.38 10.38 7.53 -40.82 -0.31 10.07 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.44 8.10 -51.93 -0.42 0.01 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.07 0.89 7.64 -51.93 -0.40 0.49 16 37 H 0.07 0.85 7.74 -51.93 -0.40 0.45 16 38 H 0.23 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.14 1.05 7.82 -52.49 -0.41 0.64 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.13 0.75 7.89 -52.49 -0.41 0.34 16 44 H 0.07 1.35 8.00 -51.93 -0.42 0.93 16 45 H 0.09 1.71 8.03 -51.93 -0.42 1.29 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -34.59 384.52 -9.16 -43.75 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.11 Total: 6.13 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.72 Total: 1.33 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.24 Total: -62.55 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.15 Total: -12.17 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.59 -9.16 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491846980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.216 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds