Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48506 * 109.47073 * 270.00237 * 3 2 1 5 5 H 1.48501 * 109.47308 * 29.99719 * 3 2 1 6 6 H 1.48496 * 109.47415 * 150.00163 * 3 2 1 7 7 C 1.38813 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99791 * 160.40684 * 7 2 1 9 9 N 1.36941 * 119.99649 * 340.40580 * 7 2 1 10 10 C 1.46494 * 119.99895 * 318.25882 * 9 7 2 11 11 C 1.53001 * 109.47372 * 270.00441 * 10 9 7 12 12 N 1.46500 * 109.47103 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00030 * 180.02562 * 12 11 10 14 14 O 1.21656 * 120.00004 * 359.97438 * 13 12 11 15 15 C 1.47136 * 120.00202 * 179.97438 * 13 12 11 16 16 N 1.35877 * 126.61685 * 355.07131 * 15 13 12 17 17 C 1.29928 * 108.74356 * 180.13813 * 16 15 13 18 18 O 1.34054 * 109.77851 * 359.56892 * 17 16 15 19 19 C 1.34767 * 108.23568 * 0.27014 * 18 17 16 20 20 C 1.47578 * 126.76098 * 179.97438 * 19 18 17 21 21 C 1.39689 * 120.15142 * 129.44481 * 20 19 18 22 22 C 1.37932 * 119.84252 * 179.69886 * 21 20 19 23 23 C 1.38377 * 120.15017 * 0.57800 * 22 21 20 24 24 C 1.38378 * 120.31741 * 359.71967 * 23 22 21 25 25 C 1.37924 * 120.15695 * 359.97438 * 24 23 22 26 26 C 1.46492 * 119.99688 * 138.26500 * 9 7 2 27 27 C 1.53001 * 117.50169 * 12.15932 * 26 9 7 28 28 C 1.52995 * 117.50167 * 303.53454 * 26 9 7 29 29 H 0.97005 * 119.99571 * 5.04198 * 1 2 3 30 30 H 1.09001 * 109.47293 * 150.00476 * 10 9 7 31 31 H 1.08999 * 109.47349 * 30.00647 * 10 9 7 32 32 H 1.08994 * 109.47421 * 60.00202 * 11 10 9 33 33 H 1.08999 * 109.47052 * 300.00387 * 11 10 9 34 34 H 0.96994 * 120.00337 * 359.97438 * 12 11 10 35 35 H 1.07996 * 125.11662 * 179.84010 * 17 16 15 36 36 H 1.08003 * 120.07788 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.92295 * 180.29656 * 22 21 20 38 38 H 1.08003 * 119.84324 * 179.73809 * 23 22 21 39 39 H 1.08006 * 119.92160 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.07919 * 180.02562 * 25 24 23 41 41 H 1.09003 * 115.55152 * 157.86703 * 26 9 7 42 42 H 1.08995 * 117.50027 * 0.02562 * 27 26 9 43 43 H 1.09003 * 117.49748 * 145.02260 * 27 26 9 44 44 H 1.09006 * 117.50473 * 214.98315 * 28 26 9 45 45 H 1.08999 * 117.49945 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2290 -0.3142 9 7 1.3850 -2.3539 0.3967 10 6 0.4998 -2.3416 1.5639 11 6 1.3118 -2.6513 2.8231 12 7 0.4264 -2.6396 3.9902 13 6 0.9256 -2.8876 5.2173 14 8 2.1114 -3.1216 5.3557 15 6 0.0365 -2.8753 6.3896 16 7 -1.2804 -2.5411 6.4045 17 6 -1.7245 -2.6477 7.6209 18 8 -0.7370 -3.0568 8.4300 19 6 0.3790 -3.2086 7.6900 20 6 1.7049 -3.6436 8.1704 21 6 2.3823 -4.6776 7.5198 22 6 3.6240 -5.0749 7.9704 23 6 4.1933 -4.4598 9.0714 24 6 3.5252 -3.4391 9.7246 25 6 2.2858 -3.0273 9.2812 26 6 1.6014 -3.5982 -0.3455 27 6 2.7404 -3.6226 -1.3669 28 6 1.2867 -3.5916 -1.8427 29 1 -0.4850 0.8369 -0.0738 30 1 -0.2775 -3.0954 1.4383 31 1 0.0399 -1.3582 1.6608 32 1 2.0890 -1.8976 2.9488 33 1 1.7717 -3.6347 2.7262 34 1 -0.5190 -2.4527 3.8800 35 1 -2.7379 -2.4422 7.9325 36 1 1.9369 -5.1618 6.6633 37 1 4.1510 -5.8709 7.4655 38 1 5.1639 -4.7777 9.4226 39 1 3.9754 -2.9637 10.5836 40 1 1.7657 -2.2302 9.7916 41 1 1.4006 -4.5162 0.2069 42 1 3.3290 -2.7131 -1.4862 43 1 3.2892 -4.5568 -1.4864 44 1 0.8791 -4.5053 -2.2755 45 1 0.9181 -2.6616 -2.2755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493376222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 66.547620 kcal Electronic energy + Delta-G solvation = -28710.429185 eV Core-core repulsion = 24696.402562 eV Total energy + Delta-G solvation = -4014.026623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45285 -39.31230 -38.91972 -37.05677 -34.99373 -34.72960 -33.12867 -32.59974 -31.11829 -30.87580 -29.15302 -27.62055 -24.87936 -23.91170 -23.53587 -22.57918 -21.84027 -21.35491 -21.10202 -20.27743 -19.76680 -18.39002 -17.30180 -16.91235 -16.36412 -16.06025 -15.74840 -15.39376 -15.29240 -14.99347 -14.79088 -14.48467 -14.25983 -13.89101 -13.78777 -13.59153 -13.30692 -12.86069 -12.77877 -12.54216 -11.93235 -11.67142 -11.59880 -11.44967 -11.32067 -11.00717 -10.95328 -10.76241 -10.72042 -10.33988 -10.16395 -9.99861 -9.82835 -9.60124 -9.59340 -9.27740 -9.06673 -8.62932 -8.52474 -8.42182 -6.46771 -5.89418 -3.49607 0.48745 1.26877 1.40784 1.98270 2.36076 3.30729 3.39194 3.40369 3.44541 3.47476 3.62846 3.95204 4.38211 4.40580 4.72672 4.75581 4.87350 4.93874 4.99267 5.18697 5.25033 5.27835 5.34136 5.35223 5.49317 5.70581 5.85526 5.91032 5.93745 6.06268 6.10357 6.22853 6.25316 6.28838 6.30438 6.33863 6.50121 6.53264 6.64335 6.74206 6.83065 6.98158 7.08185 7.27021 7.28603 7.47877 7.79911 7.92551 8.47890 8.50835 9.10353 9.70208 10.30041 11.12031 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002783 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.854547 B =10060.463704 C =10505.715043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.023 3.977 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.270 4.270 8 H 0.064 0.936 9 N -0.545 5.545 10 C 0.145 3.855 11 C 0.098 3.902 12 N -0.700 5.700 13 C 0.590 3.410 14 O -0.532 6.532 15 C -0.047 4.047 16 N -0.458 5.458 17 C 0.175 3.825 18 O -0.194 6.194 19 C 0.070 3.930 20 C -0.027 4.027 21 C -0.043 4.043 22 C -0.121 4.121 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.089 4.089 26 C 0.123 3.877 27 C -0.201 4.201 28 C -0.217 4.217 29 H 0.258 0.742 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.406 0.594 35 H 0.256 0.744 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -8.880 19.075 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.400 4.400 8 H 0.081 0.919 9 N -0.262 5.262 10 C 0.018 3.982 11 C -0.027 4.027 12 N -0.350 5.350 13 C 0.373 3.627 14 O -0.409 6.409 15 C -0.169 4.169 16 N -0.186 5.186 17 C -0.053 4.053 18 O -0.080 6.080 19 C 0.014 3.986 20 C -0.028 4.028 21 C -0.061 4.061 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.147 4.147 25 C -0.107 4.107 26 C 0.014 3.986 27 C -0.240 4.240 28 C -0.258 4.258 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.272 0.728 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.342 -8.680 18.702 20.621 hybrid contribution 0.016 1.020 0.286 1.059 sum -0.326 -7.660 18.988 20.477 Atomic orbital electron populations 1.69926 1.05633 1.26277 1.50635 1.25345 0.95110 0.98892 0.98516 0.86391 0.79714 0.83366 0.77953 1.21029 1.21364 1.19999 1.18953 0.93741 0.84373 1.42901 0.91858 1.43140 1.53071 1.04183 1.25760 1.20981 0.91034 1.02733 0.83480 1.22439 0.94288 1.01218 0.84720 1.45937 1.13476 1.69228 1.06313 1.16672 0.86119 0.78119 0.81749 1.90843 1.14734 1.50057 1.85305 1.22225 0.91378 1.08751 0.94504 1.70696 1.08727 1.17469 1.21718 1.28037 0.94899 0.98922 0.83447 1.84466 1.18067 1.65039 1.40450 1.21809 0.86719 1.01127 0.88948 1.17445 0.88712 0.98723 0.97876 1.21090 0.94411 0.93667 0.96967 1.21057 0.95098 1.00839 0.96936 1.21322 0.99587 0.95646 0.95365 1.21003 0.94931 0.98039 1.00710 1.21195 0.95797 0.98948 0.94795 1.21206 1.00027 0.90390 0.87017 1.23064 0.91939 1.01457 1.07562 1.23282 0.98199 1.01383 1.02893 0.93229 0.94790 0.88647 0.91309 0.92759 0.75956 0.72835 0.85518 0.85293 0.85709 0.85548 0.85782 0.89373 0.88651 0.90891 0.91306 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 11.66 55.49 0.65 -23.95 16 2 C 0.02 0.62 4.96 -17.43 -0.09 0.53 16 3 Si 0.90 21.34 29.60 -169.99 -5.03 16.31 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.27 -7.17 8.47 -15.06 -0.13 -7.29 16 8 H 0.06 1.70 6.58 -52.49 -0.35 1.36 16 9 N -0.55 -13.21 2.75 -165.67 -0.46 -13.66 16 10 C 0.14 3.23 5.45 -4.04 -0.02 3.21 16 11 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 12 N -0.70 -12.56 5.55 -61.47 -0.34 -12.90 16 13 C 0.59 10.59 7.74 -12.65 -0.10 10.49 16 14 O -0.53 -10.58 13.79 5.23 0.07 -10.51 16 15 C -0.05 -0.73 7.04 -82.35 -0.58 -1.31 16 16 N -0.46 -6.22 11.04 -11.04 -0.12 -6.35 16 17 C 0.17 1.69 13.16 51.96 0.68 2.37 16 18 O -0.19 -2.19 10.75 5.09 0.05 -2.14 16 19 C 0.07 0.97 6.85 -35.66 -0.24 0.72 16 20 C -0.03 -0.36 5.28 -105.01 -0.55 -0.91 16 21 C -0.04 -0.56 7.72 -39.15 -0.30 -0.87 16 22 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 23 C -0.10 -0.97 10.04 -39.48 -0.40 -1.37 16 24 C -0.13 -1.24 10.03 -39.64 -0.40 -1.64 16 25 C -0.09 -1.00 9.79 -39.16 -0.38 -1.39 16 26 C 0.12 2.62 6.60 -67.94 -0.45 2.17 16 27 C -0.20 -4.00 9.85 -26.73 -0.26 -4.27 16 28 C -0.22 -4.46 10.20 -26.73 -0.27 -4.73 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.10 2.40 5.77 -51.93 -0.30 2.10 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.41 6.79 8.21 -40.82 -0.34 6.45 16 35 H 0.26 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.72 7.56 -52.48 -0.40 1.32 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.10 2.05 6.43 -51.93 -0.33 1.72 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -31.83 385.74 -9.19 -41.02 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.92 Total: 10.38 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.91 Total: -4.03 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.27 Total: -56.85 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.13 Total: -12.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.83 -9.19 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493376222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.570 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds