Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48499 * 109.47698 * 275.68019 * 3 2 1 5 5 H 1.48506 * 109.47197 * 35.68457 * 3 2 1 6 6 H 1.48504 * 109.46910 * 155.67888 * 3 2 1 7 7 C 1.38817 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99596 * 337.75950 * 7 2 1 9 9 N 1.36930 * 120.00015 * 157.76861 * 7 2 1 10 10 C 1.46507 * 119.99733 * 321.41667 * 9 7 2 11 11 C 1.52995 * 109.47245 * 269.99976 * 10 9 7 12 12 N 1.46498 * 109.47109 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99793 * 180.02562 * 12 11 10 14 14 O 1.21550 * 120.00238 * 0.02562 * 13 12 11 15 15 C 1.47929 * 119.99851 * 180.02562 * 13 12 11 16 16 C 1.38262 * 119.24517 * 180.02562 * 15 13 12 17 17 C 1.40688 * 118.65407 * 180.02562 * 16 15 13 18 18 C 1.40233 * 122.05940 * 179.97438 * 17 16 15 19 19 C 1.36315 * 119.48344 * 180.02562 * 18 17 16 20 20 C 1.39247 * 120.94069 * 359.97438 * 19 18 17 21 21 C 1.36363 * 121.06264 * 359.97438 * 20 19 18 22 22 C 1.40042 * 119.58857 * 0.26861 * 21 20 19 23 23 C 1.41344 * 121.85202 * 180.18029 * 22 21 20 24 24 O 1.35494 * 119.95168 * 359.54767 * 23 22 21 25 25 N 1.31380 * 120.09750 * 179.75945 * 23 22 21 26 26 C 1.46502 * 120.00265 * 141.42447 * 9 7 2 27 27 C 1.53003 * 117.49618 * 3.18269 * 26 9 7 28 28 C 1.53002 * 117.49460 * 294.52508 * 26 9 7 29 29 H 0.97004 * 119.99697 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46494 * 150.00213 * 10 9 7 31 31 H 1.08997 * 109.47159 * 30.00810 * 10 9 7 32 32 H 1.09006 * 109.46770 * 60.00355 * 11 10 9 33 33 H 1.08997 * 109.47723 * 300.00488 * 11 10 9 34 34 H 0.96994 * 120.00352 * 0.02562 * 12 11 10 35 35 H 1.08005 * 120.67118 * 0.02562 * 16 15 13 36 36 H 1.07999 * 120.25414 * 0.04782 * 18 17 16 37 37 H 1.07994 * 119.52652 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.46583 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.20139 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99883 * 270.21089 * 24 23 22 41 41 H 1.08996 * 115.55277 * 148.85909 * 26 9 7 42 42 H 1.08998 * 117.50066 * 0.02562 * 27 26 9 43 43 H 1.09004 * 117.49694 * 145.02249 * 27 26 9 44 44 H 1.08993 * 117.49745 * 214.97953 * 28 26 9 45 45 H 1.08998 * 117.50011 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6027 1.4083 0.5766 7 6 2.0103 -1.2022 -0.0005 8 1 1.5304 -2.1028 0.3531 9 7 3.3032 -1.2461 -0.4492 10 6 3.7037 -0.4455 -1.6090 11 6 3.5026 -1.2626 -2.8868 12 7 3.9024 -0.4617 -4.0465 13 6 3.8105 -0.9799 -5.2873 14 8 3.3954 -2.1115 -5.4441 15 6 4.2148 -0.1715 -6.4583 16 6 4.1135 -0.7184 -7.7241 17 6 4.5020 0.0613 -8.8289 18 6 4.4295 -0.4220 -10.1433 19 6 4.8203 0.3787 -11.1750 20 6 5.2896 1.6688 -10.9420 21 6 5.3718 2.1697 -9.6763 22 6 4.9838 1.3740 -8.5912 23 6 5.0457 1.8460 -7.2603 24 8 5.4988 3.0975 -7.0068 25 7 4.6685 1.0715 -6.2684 26 6 4.2860 -2.0938 0.2303 27 6 3.7895 -2.9624 1.3879 28 6 4.6554 -1.7320 1.6703 29 1 -0.4850 0.8401 -0.0004 30 1 4.7543 -0.1704 -1.5152 31 1 3.0945 0.4572 -1.6551 32 1 2.4520 -1.5377 -2.9805 33 1 4.1117 -2.1652 -2.8406 34 1 4.2334 0.4414 -3.9214 35 1 3.7437 -1.7237 -7.8619 36 1 4.0665 -1.4206 -10.3367 37 1 4.7652 0.0070 -12.1875 38 1 5.5926 2.2828 -11.7772 39 1 5.7383 3.1721 -9.5115 40 1 6.4539 3.1486 -6.8638 41 1 5.0730 -2.5021 -0.4037 42 1 2.7316 -2.9034 1.6437 43 1 4.2502 -3.9420 1.5157 44 1 5.6853 -1.9027 1.9837 45 1 4.1675 -0.8631 2.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493378135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 38.814206 kcal Electronic energy + Delta-G solvation = -28447.478839 eV Core-core repulsion = 24432.249605 eV Total energy + Delta-G solvation = -4015.229234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40709 -39.39064 -38.27173 -37.38590 -36.78214 -34.96245 -33.24985 -32.62932 -31.72424 -31.25159 -29.88747 -27.91324 -25.03413 -24.37581 -24.05980 -22.51341 -22.36929 -21.42444 -20.87874 -19.68932 -19.10822 -18.33345 -17.96070 -16.92617 -16.41832 -16.03915 -15.79912 -15.69388 -15.56045 -15.03657 -14.86122 -14.64007 -14.37490 -13.91194 -13.80856 -13.70544 -13.30789 -13.14988 -12.54145 -12.37638 -12.23950 -12.21828 -12.08881 -11.84857 -11.64652 -11.61059 -10.86539 -10.72632 -10.47931 -10.42912 -10.35939 -10.03394 -9.90327 -9.60813 -9.55743 -9.50247 -9.42209 -8.72265 -8.53482 -8.34645 -6.80623 -6.05802 -3.50207 -0.16207 0.31123 1.41862 2.21176 3.04962 3.16866 3.26335 3.34014 3.43739 3.49056 3.75280 4.14706 4.18837 4.35983 4.45176 4.47626 4.63736 4.75462 4.78052 4.86714 4.99093 5.05929 5.23523 5.30365 5.36741 5.51269 5.54781 5.75068 5.77268 5.79789 5.92564 5.95725 5.98835 6.05789 6.07660 6.18402 6.33838 6.42355 6.45166 6.59636 6.68479 6.83596 6.92985 7.07550 7.11132 7.41219 7.81872 7.98866 8.35433 8.39546 8.91183 9.63261 10.01820 11.08551 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002509 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.630122 B =11157.186211 C =11699.258718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.041 3.959 3 Si 0.872 3.128 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.274 4.274 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.131 3.869 11 C 0.098 3.902 12 N -0.702 5.702 13 C 0.565 3.435 14 O -0.535 6.535 15 C 0.086 3.914 16 C -0.095 4.095 17 C -0.022 4.022 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.109 4.109 23 C 0.353 3.647 24 O -0.472 6.472 25 N -0.484 5.484 26 C 0.118 3.882 27 C -0.187 4.187 28 C -0.222 4.222 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.407 0.593 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.404 0.596 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.009 3.617 -21.738 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.161 4.161 3 Si 0.702 3.298 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.102 0.898 9 N -0.286 5.286 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.352 5.352 13 C 0.349 3.651 14 O -0.413 6.413 15 C -0.040 4.040 16 C -0.116 4.116 17 C -0.027 4.027 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.102 4.102 22 C -0.113 4.113 23 C 0.158 3.842 24 O -0.279 6.279 25 N -0.205 5.205 26 C 0.010 3.990 27 C -0.225 4.225 28 C -0.263 4.263 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.262 0.738 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.933 3.279 -20.936 25.362 hybrid contribution 0.904 1.229 -0.571 1.629 sum 14.837 4.509 -21.507 26.515 Atomic orbital electron populations 1.69866 1.06010 1.26914 1.50396 1.25509 0.95089 0.97828 0.97665 0.86992 0.80973 0.84656 0.77192 1.21122 1.22732 1.18967 1.18733 0.85712 0.94554 1.41256 0.89753 1.43510 1.07156 1.50724 1.27238 1.21321 0.98211 0.94262 0.85726 1.22341 1.01650 0.94770 0.83937 1.45962 1.64289 1.19054 1.05869 1.17758 0.78852 0.85798 0.82704 1.90798 1.46746 1.18175 1.85549 1.20729 0.99662 0.89625 0.93971 1.22230 0.97106 1.01412 0.90814 1.18075 0.97495 0.92660 0.94456 1.21065 0.99662 1.00564 0.90788 1.21053 0.97084 0.93996 0.99566 1.21020 0.99278 0.95900 0.97165 1.20960 0.98110 0.99546 0.91604 1.19053 1.02984 0.94758 0.94482 1.19104 0.94041 0.84530 0.86552 1.84748 1.29260 1.21302 1.92616 1.66851 1.11958 1.04536 1.37107 1.21180 0.94115 0.97030 0.86664 1.23079 1.01091 0.93484 1.04827 1.23381 0.98403 0.99775 1.04761 0.92527 0.93343 0.92124 0.90225 0.91802 0.75782 0.82454 0.84385 0.85148 0.85241 0.84432 0.73755 0.88978 0.87794 0.90389 0.90767 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.97 55.49 0.78 -26.20 16 2 C 0.04 1.16 5.30 -17.43 -0.09 1.07 16 3 Si 0.87 21.85 25.08 -169.99 -4.26 17.59 16 4 H -0.28 -6.91 6.69 56.52 0.38 -6.53 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.27 -7.47 8.96 -15.06 -0.13 -7.60 16 8 H 0.09 2.49 6.86 -52.49 -0.36 2.13 16 9 N -0.57 -13.20 2.39 -165.66 -0.40 -13.59 16 10 C 0.13 2.76 4.66 -4.04 -0.02 2.74 16 11 C 0.10 1.95 6.00 -4.05 -0.02 1.92 16 12 N -0.70 -12.41 5.54 -61.22 -0.34 -12.75 16 13 C 0.57 9.97 7.80 -12.29 -0.10 9.88 16 14 O -0.54 -10.77 16.27 5.32 0.09 -10.68 16 15 C 0.09 1.27 6.73 -83.09 -0.56 0.71 16 16 C -0.09 -1.18 9.41 -38.65 -0.36 -1.54 16 17 C -0.02 -0.23 5.74 -106.84 -0.61 -0.85 16 18 C -0.10 -0.80 9.81 -39.52 -0.39 -1.19 16 19 C -0.10 -0.61 9.95 -39.90 -0.40 -1.00 16 20 C -0.12 -0.71 9.95 -39.88 -0.40 -1.10 16 21 C -0.08 -0.62 9.58 -39.58 -0.38 -1.00 16 22 C -0.11 -1.12 5.76 -106.66 -0.61 -1.73 16 23 C 0.35 4.08 7.80 -16.56 -0.13 3.95 16 24 O -0.47 -4.32 12.83 -18.17 -0.23 -4.55 16 25 N -0.48 -6.81 9.47 -9.60 -0.09 -6.90 16 26 C 0.12 2.37 6.56 -67.93 -0.45 1.93 16 27 C -0.19 -3.56 9.80 -26.69 -0.26 -3.82 16 28 C -0.22 -4.22 10.36 -26.69 -0.28 -4.50 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.06 1.40 3.40 -51.93 -0.18 1.23 16 32 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.41 6.65 7.77 -40.82 -0.32 6.33 16 35 H 0.16 1.82 7.59 -52.48 -0.40 1.42 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.76 7.65 -52.49 -0.40 0.36 16 40 H 0.40 1.57 9.06 45.56 0.41 1.98 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.10 2.24 6.44 -51.93 -0.33 1.90 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -34.40 378.79 -8.90 -43.31 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.96 Total: 10.20 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -5.19 Total: -2.13 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.05 Total: -59.44 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.15 Total: -15.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.26 Total: 17.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.40 -8.90 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493378135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.120 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds