Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48499 * 109.47698 * 275.68019 * 3 2 1 5 5 H 1.48506 * 109.47197 * 35.68457 * 3 2 1 6 6 H 1.48504 * 109.46910 * 155.67888 * 3 2 1 7 7 C 1.38817 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99596 * 337.75950 * 7 2 1 9 9 N 1.36930 * 120.00015 * 157.76861 * 7 2 1 10 10 C 1.46507 * 119.99733 * 321.41667 * 9 7 2 11 11 C 1.52995 * 109.47245 * 269.99976 * 10 9 7 12 12 N 1.46498 * 109.47109 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99793 * 180.02562 * 12 11 10 14 14 O 1.21550 * 120.00238 * 0.02562 * 13 12 11 15 15 C 1.47929 * 119.99851 * 180.02562 * 13 12 11 16 16 C 1.38262 * 119.24517 * 180.02562 * 15 13 12 17 17 C 1.40688 * 118.65407 * 180.02562 * 16 15 13 18 18 C 1.40233 * 122.05940 * 179.97438 * 17 16 15 19 19 C 1.36315 * 119.48344 * 180.02562 * 18 17 16 20 20 C 1.39247 * 120.94069 * 359.97438 * 19 18 17 21 21 C 1.36363 * 121.06264 * 359.97438 * 20 19 18 22 22 C 1.40042 * 119.58857 * 0.26861 * 21 20 19 23 23 C 1.41344 * 121.85202 * 180.18029 * 22 21 20 24 24 O 1.35494 * 119.95168 * 359.54767 * 23 22 21 25 25 N 1.31380 * 120.09750 * 179.75945 * 23 22 21 26 26 C 1.46502 * 120.00265 * 141.42447 * 9 7 2 27 27 C 1.53003 * 117.49618 * 3.18269 * 26 9 7 28 28 C 1.53002 * 117.49460 * 294.52508 * 26 9 7 29 29 H 0.97004 * 119.99697 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46494 * 150.00213 * 10 9 7 31 31 H 1.08997 * 109.47159 * 30.00810 * 10 9 7 32 32 H 1.09006 * 109.46770 * 60.00355 * 11 10 9 33 33 H 1.08997 * 109.47723 * 300.00488 * 11 10 9 34 34 H 0.96994 * 120.00352 * 0.02562 * 12 11 10 35 35 H 1.08005 * 120.67118 * 0.02562 * 16 15 13 36 36 H 1.07999 * 120.25414 * 0.04782 * 18 17 16 37 37 H 1.07994 * 119.52652 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.46583 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.20139 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99883 * 270.21089 * 24 23 22 41 41 H 1.08996 * 115.55277 * 148.85909 * 26 9 7 42 42 H 1.08998 * 117.50066 * 0.02562 * 27 26 9 43 43 H 1.09004 * 117.49694 * 145.02249 * 27 26 9 44 44 H 1.08993 * 117.49745 * 214.97953 * 28 26 9 45 45 H 1.08998 * 117.50011 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6027 1.4083 0.5766 7 6 2.0103 -1.2022 -0.0005 8 1 1.5304 -2.1028 0.3531 9 7 3.3032 -1.2461 -0.4492 10 6 3.7037 -0.4455 -1.6090 11 6 3.5026 -1.2626 -2.8868 12 7 3.9024 -0.4617 -4.0465 13 6 3.8105 -0.9799 -5.2873 14 8 3.3954 -2.1115 -5.4441 15 6 4.2148 -0.1715 -6.4583 16 6 4.1135 -0.7184 -7.7241 17 6 4.5020 0.0613 -8.8289 18 6 4.4295 -0.4220 -10.1433 19 6 4.8203 0.3787 -11.1750 20 6 5.2896 1.6688 -10.9420 21 6 5.3718 2.1697 -9.6763 22 6 4.9838 1.3740 -8.5912 23 6 5.0457 1.8460 -7.2603 24 8 5.4988 3.0975 -7.0068 25 7 4.6685 1.0715 -6.2684 26 6 4.2860 -2.0938 0.2303 27 6 3.7895 -2.9624 1.3879 28 6 4.6554 -1.7320 1.6703 29 1 -0.4850 0.8401 -0.0004 30 1 4.7543 -0.1704 -1.5152 31 1 3.0945 0.4572 -1.6551 32 1 2.4520 -1.5377 -2.9805 33 1 4.1117 -2.1652 -2.8406 34 1 4.2334 0.4414 -3.9214 35 1 3.7437 -1.7237 -7.8619 36 1 4.0665 -1.4206 -10.3367 37 1 4.7652 0.0070 -12.1875 38 1 5.5926 2.2828 -11.7772 39 1 5.7383 3.1721 -9.5115 40 1 6.4539 3.1486 -6.8638 41 1 5.0730 -2.5021 -0.4037 42 1 2.7316 -2.9034 1.6437 43 1 4.2502 -3.9420 1.5157 44 1 5.6853 -1.9027 1.9837 45 1 4.1675 -0.8631 2.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493378135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 12.090818 kcal Electronic energy + Delta-G solvation = -28448.637652 eV Core-core repulsion = 24432.249605 eV Total energy + Delta-G solvation = -4016.388047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22290 -40.67944 -39.06424 -38.94109 -37.65832 -36.50154 -35.02620 -33.46062 -33.26149 -32.28425 -30.81288 -29.49495 -26.50103 -25.56386 -25.08555 -23.88030 -23.19938 -22.95045 -22.12237 -21.46102 -20.11188 -19.25419 -18.75372 -18.26698 -17.80024 -17.43387 -17.27687 -16.96363 -16.58092 -16.48208 -16.19612 -15.52723 -15.43196 -15.17302 -14.94917 -14.84934 -14.54491 -14.32564 -14.19757 -14.08816 -13.60320 -13.41177 -13.02392 -12.90745 -12.82698 -12.71748 -12.55487 -12.18672 -12.12841 -11.86850 -11.77985 -11.62716 -11.34842 -11.17694 -10.99456 -10.67700 -10.61705 -10.27253 -10.14053 -9.12080 -8.72013 -8.24911 -5.65880 -0.93698 -0.42716 0.74201 1.26147 1.27040 1.37212 1.48780 1.92412 2.19410 2.35743 2.37243 2.90180 2.97213 3.14972 3.31748 3.33906 3.50287 3.63796 3.78273 3.95049 4.05884 4.12523 4.23351 4.24346 4.27284 4.37677 4.38534 4.44771 4.53810 4.60427 4.63681 4.85999 4.90556 4.94854 4.99074 5.00657 5.04280 5.26452 5.31246 5.35426 5.36303 5.43345 5.54231 5.81695 5.89963 6.17384 6.27233 6.51525 6.69578 6.91844 7.04101 7.55863 7.96063 8.93794 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002509 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.630122 B =11157.186211 C =11699.258718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.017 4.017 3 Si 0.936 3.064 4 H -0.274 1.274 5 H -0.309 1.309 6 H -0.251 1.251 7 C -0.256 4.256 8 H 0.047 0.953 9 N -0.581 5.581 10 C 0.133 3.867 11 C 0.116 3.884 12 N -0.700 5.700 13 C 0.564 3.436 14 O -0.571 6.571 15 C 0.055 3.945 16 C -0.088 4.088 17 C -0.040 4.040 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.117 4.117 23 C 0.355 3.645 24 O -0.475 6.475 25 N -0.513 5.513 26 C 0.100 3.900 27 C -0.188 4.188 28 C -0.207 4.207 29 H 0.263 0.737 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.426 0.574 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.600 4.963 -24.833 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.214 4.214 3 Si 0.764 3.236 4 H -0.201 1.201 5 H -0.237 1.237 6 H -0.174 1.174 7 C -0.385 4.385 8 H 0.065 0.935 9 N -0.301 5.301 10 C 0.007 3.993 11 C -0.010 4.010 12 N -0.350 5.350 13 C 0.350 3.650 14 O -0.451 6.451 15 C -0.069 4.069 16 C -0.110 4.110 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.121 4.121 23 C 0.159 3.841 24 O -0.286 6.286 25 N -0.235 5.235 26 C -0.006 4.006 27 C -0.226 4.226 28 C -0.247 4.247 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.288 0.712 41 H 0.144 0.856 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.598 4.633 -24.032 30.145 hybrid contribution -0.137 0.776 0.160 0.804 sum 17.461 5.409 -23.873 30.068 Atomic orbital electron populations 1.69998 1.07745 1.27480 1.53534 1.26113 0.95632 1.01223 0.98454 0.85954 0.79930 0.80251 0.77437 1.20081 1.23717 1.17430 1.18554 0.87440 0.93128 1.39412 0.93522 1.43600 1.06501 1.51523 1.28466 1.21338 0.99608 0.93145 0.85209 1.21911 0.99239 0.95193 0.84630 1.45823 1.64480 1.19187 1.05491 1.18238 0.77738 0.85651 0.83327 1.90756 1.48346 1.19798 1.86155 1.20221 1.03114 0.90414 0.93198 1.22312 0.96309 1.01513 0.90829 1.18270 0.98284 0.92950 0.95002 1.21339 0.99947 1.01795 0.89946 1.21523 0.94819 0.93665 1.00638 1.21516 0.96901 0.96006 0.97570 1.21250 0.98106 1.00219 0.91358 1.19251 1.03080 0.95024 0.94729 1.19304 0.93318 0.84638 0.86813 1.84701 1.31334 1.19972 1.92601 1.66699 1.13674 1.04635 1.38505 1.21543 0.94400 0.97109 0.87594 1.23067 0.99580 0.95507 1.04411 1.23358 1.00034 0.98354 1.02949 0.92797 0.89831 0.94130 0.94412 0.91144 0.74896 0.82545 0.82827 0.81797 0.81769 0.82430 0.71190 0.85644 0.91334 0.86897 0.86816 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.10 13.97 21.65 0.30 -59.80 16 2 C -0.02 -1.02 5.30 84.86 0.45 -0.57 16 3 Si 0.94 46.38 25.08 68.60 1.72 48.10 16 4 H -0.27 -12.99 6.69 99.48 0.67 -12.33 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.25 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.26 -14.50 8.96 84.04 0.75 -13.75 16 8 H 0.05 2.95 6.86 -2.91 -0.02 2.93 16 9 N -0.58 -27.13 2.39 -678.02 -1.62 -28.75 16 10 C 0.13 5.53 4.66 86.38 0.40 5.94 16 11 C 0.12 4.74 6.00 86.38 0.52 5.26 16 12 N -0.70 -25.39 5.54 -465.89 -2.58 -27.97 16 13 C 0.56 20.81 7.80 86.81 0.68 21.49 16 14 O -0.57 -24.17 16.27 -3.87 -0.06 -24.23 16 15 C 0.05 1.68 6.73 41.44 0.28 1.96 16 16 C -0.09 -2.24 9.41 22.87 0.22 -2.03 16 17 C -0.04 -0.81 5.74 -21.30 -0.12 -0.93 16 18 C -0.11 -1.46 9.81 22.31 0.22 -1.24 16 19 C -0.09 -0.69 9.95 22.06 0.22 -0.47 16 20 C -0.10 -0.75 9.95 22.07 0.22 -0.54 16 21 C -0.09 -1.03 9.58 22.27 0.21 -0.82 16 22 C -0.12 -2.20 5.76 -21.19 -0.12 -2.32 16 23 C 0.35 7.89 7.80 85.52 0.67 8.56 16 24 O -0.48 -7.87 12.83 -87.95 -1.13 -9.00 16 25 N -0.51 -14.58 9.47 -297.69 -2.82 -17.40 16 26 C 0.10 3.86 6.56 44.99 0.30 4.16 16 27 C -0.19 -6.99 9.80 30.62 0.30 -6.69 16 28 C -0.21 -7.37 10.36 30.62 0.32 -7.06 16 29 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 30 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 31 H 0.04 1.87 3.40 -2.39 -0.01 1.86 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.41 13.70 7.77 -92.71 -0.72 12.98 16 35 H 0.16 3.79 7.59 -2.91 -0.02 3.77 16 36 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.16 0.14 8.06 -2.91 -0.02 0.11 16 39 H 0.16 1.12 7.65 -2.91 -0.02 1.10 16 40 H 0.43 2.41 9.06 -74.05 -0.67 1.74 16 41 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.07 3.06 6.44 -2.39 -0.02 3.05 16 43 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 44 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -80.40 378.79 -1.07 -81.47 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.38 Total: 26.65 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.50 Total: 10.94 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -6.72 Total: -133.93 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.19 Total: -33.23 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.72 Total: 48.10 kcal Total: -80.40 -1.07 -81.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493378135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.557 kcal (2) G-P(sol) polarization free energy of solvation -80.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds