Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47112 * 272.02138 * 3 2 1 5 5 H 1.48496 * 109.47134 * 32.02398 * 3 2 1 6 6 H 1.48505 * 109.46945 * 152.02213 * 3 2 1 7 7 C 1.38814 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00204 * 336.83074 * 7 2 1 9 9 N 1.36937 * 119.99592 * 156.83161 * 7 2 1 10 10 C 1.46498 * 120.00237 * 320.87933 * 9 7 2 11 11 C 1.53000 * 109.47130 * 270.00709 * 10 9 7 12 12 N 1.46506 * 109.46699 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99753 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00094 * 359.97438 * 13 12 11 15 15 C 1.47554 * 119.99945 * 179.97438 * 13 12 11 16 16 C 1.38915 * 120.29702 * 0.02562 * 15 13 12 17 17 C 1.40552 * 118.06320 * 179.97438 * 16 15 13 18 18 C 1.40550 * 121.12352 * 180.02562 * 17 16 15 19 19 C 1.36151 * 119.63466 * 180.02562 * 18 17 16 20 20 C 1.39324 * 120.83479 * 359.94920 * 19 18 17 21 21 C 1.36144 * 121.07480 * 0.02964 * 20 19 18 22 22 C 1.40530 * 119.82940 * 359.97438 * 21 20 19 23 23 N 1.33815 * 120.74210 * 180.02562 * 22 21 20 24 24 C 1.31374 * 121.65932 * 179.71867 * 23 22 21 25 25 O 1.35415 * 119.32045 * 180.29080 * 24 23 22 26 26 C 1.46502 * 119.99763 * 140.88914 * 9 7 2 27 27 C 1.53002 * 117.50014 * 4.00911 * 26 9 7 28 28 C 1.53000 * 60.00026 * 252.51282 * 27 26 9 29 29 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46796 * 30.00693 * 10 9 7 31 31 H 1.08999 * 109.46893 * 150.00019 * 10 9 7 32 32 H 1.08996 * 109.46758 * 299.99574 * 11 10 9 33 33 H 1.08993 * 109.47375 * 59.99822 * 11 10 9 34 34 H 0.96995 * 120.00138 * 359.97438 * 12 11 10 35 35 H 1.07994 * 120.96442 * 0.02562 * 16 15 13 36 36 H 1.07993 * 120.18370 * 359.95104 * 18 17 16 37 37 H 1.08006 * 119.58050 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.46678 * 180.02562 * 20 19 18 39 39 H 1.08007 * 120.08623 * 179.97438 * 21 20 19 40 40 H 0.96703 * 113.99179 * 270.25239 * 25 24 23 41 41 H 1.09002 * 115.55193 * 149.72355 * 26 9 7 42 42 H 1.08997 * 117.49952 * 0.02562 * 27 26 9 43 43 H 1.08996 * 117.49675 * 145.02527 * 27 26 9 44 44 H 1.09008 * 117.50233 * 252.51001 * 28 27 26 45 45 H 1.08999 * 117.52028 * 107.48053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7424 6 1 3.5686 1.4281 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2968 -1.2501 -0.4660 10 6 3.6779 -0.4692 -1.6455 11 6 3.4609 -1.3097 -2.9055 12 7 3.8426 -0.5289 -4.0849 13 6 3.7346 -1.0695 -5.3148 14 8 3.3208 -2.2053 -5.4454 15 6 4.1185 -0.2829 -6.5027 16 6 4.5924 1.0151 -6.3606 17 6 4.9450 1.7213 -7.5235 18 6 5.4320 3.0379 -7.4543 19 6 5.7640 3.6940 -8.6002 20 6 5.6281 3.0765 -9.8417 21 6 5.1600 1.8022 -9.9452 22 6 4.8064 1.0911 -8.7859 23 7 4.3448 -0.1624 -8.8664 24 6 4.0141 -0.8456 -7.7941 25 8 3.5577 -2.1132 -7.9301 26 6 4.2921 -2.0826 0.2142 27 6 3.8114 -2.9465 1.3819 28 6 4.6661 -1.7060 1.6492 29 1 -0.4850 0.8400 -0.0004 30 1 3.0651 0.4306 -1.6990 31 1 4.7287 -0.1893 -1.5719 32 1 4.0737 -2.2094 -2.8520 33 1 2.4101 -1.5896 -2.9790 34 1 4.1723 0.3774 -3.9807 35 1 4.6880 1.4680 -5.3849 36 1 5.5412 3.5269 -6.4977 37 1 6.1386 4.7056 -8.5460 38 1 5.8984 3.6173 -10.7366 39 1 5.0607 1.3391 -10.9159 40 1 2.5984 -2.1766 -8.0346 41 1 5.0796 -2.4878 -0.4212 42 1 2.7545 -2.8958 1.6437 43 1 4.2825 -3.9204 1.5147 44 1 5.6996 -1.8637 1.9579 45 1 4.1720 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493396578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 41.956478 kcal Electronic energy + Delta-G solvation = -28660.344323 eV Core-core repulsion = 24645.251348 eV Total energy + Delta-G solvation = -4015.092975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35738 -39.46730 -38.22665 -37.36102 -36.06409 -34.97456 -34.00872 -33.18159 -31.52479 -30.68434 -30.05727 -27.88048 -25.11619 -24.36334 -23.86698 -22.70041 -22.22818 -21.46216 -20.91902 -19.74169 -19.26289 -18.47049 -17.96738 -16.76216 -16.40327 -15.95678 -15.83493 -15.64874 -15.40190 -15.06529 -14.82235 -14.59700 -14.50297 -13.96862 -13.81654 -13.71575 -13.46895 -13.18436 -12.59567 -12.33384 -12.26513 -12.04451 -11.92653 -11.79579 -11.67255 -11.62891 -10.94760 -10.90113 -10.80021 -10.49505 -10.21855 -10.11778 -9.97801 -9.60620 -9.56596 -9.45848 -9.06631 -8.77248 -8.63126 -8.58799 -6.86951 -6.13977 -3.58039 -0.14586 0.26200 1.49524 2.23829 3.10176 3.14654 3.17638 3.34287 3.36593 3.39905 3.75174 4.13644 4.17512 4.32292 4.37132 4.41125 4.68224 4.71588 4.78140 4.84448 4.93610 5.00674 5.15137 5.29996 5.31283 5.50159 5.61480 5.67233 5.70789 5.73772 5.90464 5.93128 5.98945 6.00563 6.03126 6.10466 6.38040 6.38180 6.38904 6.51729 6.58685 6.75295 6.87431 7.06347 7.33137 7.56465 7.63649 7.91294 8.28846 8.31679 8.83970 9.55239 9.94216 11.00521 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002746 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.005050 B =10195.441888 C =11007.452073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.041 3.959 3 Si 0.873 3.127 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.274 4.274 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.128 3.872 11 C 0.101 3.899 12 N -0.720 5.720 13 C 0.556 3.444 14 O -0.516 6.516 15 C -0.194 4.194 16 C -0.005 4.005 17 C -0.122 4.122 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.103 4.103 22 C 0.167 3.833 23 N -0.502 5.502 24 C 0.395 3.605 25 O -0.459 6.459 26 C 0.117 3.883 27 C -0.187 4.187 28 C -0.222 4.222 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.393 0.607 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.408 0.592 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 7.867 -16.358 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.402 4.402 8 H 0.102 0.898 9 N -0.286 5.286 10 C 0.002 3.998 11 C -0.024 4.024 12 N -0.372 5.372 13 C 0.341 3.659 14 O -0.392 6.392 15 C -0.201 4.201 16 C -0.032 4.032 17 C -0.124 4.124 18 C -0.100 4.100 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.121 4.121 22 C 0.045 3.955 23 N -0.222 5.222 24 C 0.201 3.799 25 O -0.267 6.267 26 C 0.009 3.991 27 C -0.225 4.225 28 C -0.263 4.263 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.269 0.731 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.205 6.583 -17.196 22.091 hybrid contribution 0.111 1.904 0.939 2.126 sum 12.316 8.487 -16.257 22.091 Atomic orbital electron populations 1.69876 1.06018 1.26957 1.50096 1.25528 0.95061 0.97770 0.97691 0.87045 0.80923 0.84734 0.77061 1.21332 1.22682 1.19036 1.18738 0.86255 0.94679 1.40574 0.89773 1.43505 1.07373 1.52169 1.25521 1.21378 0.98229 0.94520 0.85696 1.22315 1.01858 0.95098 0.83099 1.46022 1.66567 1.18213 1.06369 1.17766 0.79156 0.86437 0.82569 1.90827 1.44960 1.17548 1.85875 1.21292 1.07496 0.95749 0.95549 1.22012 0.90382 0.92012 0.98744 1.18779 1.03783 0.96354 0.93532 1.21078 0.96871 0.92506 0.99572 1.20949 1.00525 1.00563 0.92277 1.20994 0.97052 0.94507 0.98191 1.20834 0.99480 0.94344 0.97481 1.18674 0.95178 0.89018 0.92612 1.67568 1.15163 1.07017 1.32417 1.19187 0.90463 0.84210 0.86052 1.84706 1.28628 1.19030 1.94329 1.21195 0.93950 0.97262 0.86672 1.23070 1.01185 0.93520 1.04718 1.23370 0.98436 0.99658 1.04804 0.92488 0.91928 0.93481 0.91822 0.90214 0.77335 0.83305 0.84714 0.85180 0.85006 0.84405 0.73137 0.88925 0.87805 0.90355 0.90746 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.97 55.49 0.78 -25.16 16 2 C 0.04 1.12 5.28 -17.43 -0.09 1.03 16 3 Si 0.87 20.57 25.32 -169.99 -4.30 16.27 16 4 H -0.29 -6.28 6.52 56.52 0.37 -5.92 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.27 -7.19 8.93 -15.06 -0.13 -7.32 16 8 H 0.08 2.41 6.85 -52.49 -0.36 2.06 16 9 N -0.57 -12.58 2.38 -165.66 -0.39 -12.98 16 10 C 0.13 2.49 4.68 -4.04 -0.02 2.47 16 11 C 0.10 1.86 6.00 -4.04 -0.02 1.83 16 12 N -0.72 -10.90 5.51 -61.34 -0.34 -11.24 16 13 C 0.56 8.94 7.77 -12.46 -0.10 8.84 16 14 O -0.52 -10.03 15.14 -16.68 -0.25 -10.28 16 15 C -0.19 -2.62 5.90 -104.71 -0.62 -3.24 16 16 C -0.01 -0.06 9.38 -38.46 -0.36 -0.42 16 17 C -0.12 -1.27 5.74 -106.80 -0.61 -1.88 16 18 C -0.08 -0.63 9.77 -39.46 -0.39 -1.01 16 19 C -0.13 -0.82 9.96 -39.93 -0.40 -1.21 16 20 C -0.09 -0.59 9.94 -39.93 -0.40 -0.99 16 21 C -0.10 -0.93 9.97 -39.47 -0.39 -1.32 16 22 C 0.17 1.95 6.61 -84.79 -0.56 1.39 16 23 N -0.50 -6.83 10.33 -10.76 -0.11 -6.94 16 24 C 0.40 5.58 7.74 -16.61 -0.13 5.45 16 25 O -0.46 -6.49 11.60 -39.90 -0.46 -6.95 16 26 C 0.12 2.27 6.57 -67.93 -0.45 1.82 16 27 C -0.19 -3.47 9.80 -26.73 -0.26 -3.73 16 28 C -0.22 -4.07 10.35 -26.73 -0.28 -4.35 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.32 3.45 -51.93 -0.18 1.14 16 31 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.39 4.74 6.54 -40.82 -0.27 4.47 16 35 H 0.15 1.15 6.47 -52.49 -0.34 0.82 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.41 4.13 9.06 45.56 0.41 4.54 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.10 2.18 6.44 -51.93 -0.33 1.84 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 45 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -33.73 375.62 -9.51 -43.24 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.88 Total: 11.00 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -5.20 Total: -2.63 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.07 Total: -56.31 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.72 Total: -17.23 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.30 Total: 16.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.73 -9.51 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493396578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.199 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds