Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47112 * 272.02138 * 3 2 1 5 5 H 1.48496 * 109.47134 * 32.02398 * 3 2 1 6 6 H 1.48505 * 109.46945 * 152.02213 * 3 2 1 7 7 C 1.38814 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00204 * 336.83074 * 7 2 1 9 9 N 1.36937 * 119.99592 * 156.83161 * 7 2 1 10 10 C 1.46498 * 120.00237 * 320.87933 * 9 7 2 11 11 C 1.53000 * 109.47130 * 270.00709 * 10 9 7 12 12 N 1.46506 * 109.46699 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99753 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00094 * 359.97438 * 13 12 11 15 15 C 1.47554 * 119.99945 * 179.97438 * 13 12 11 16 16 C 1.38915 * 120.29702 * 0.02562 * 15 13 12 17 17 C 1.40552 * 118.06320 * 179.97438 * 16 15 13 18 18 C 1.40550 * 121.12352 * 180.02562 * 17 16 15 19 19 C 1.36151 * 119.63466 * 180.02562 * 18 17 16 20 20 C 1.39324 * 120.83479 * 359.94920 * 19 18 17 21 21 C 1.36144 * 121.07480 * 0.02964 * 20 19 18 22 22 C 1.40530 * 119.82940 * 359.97438 * 21 20 19 23 23 N 1.33815 * 120.74210 * 180.02562 * 22 21 20 24 24 C 1.31374 * 121.65932 * 179.71867 * 23 22 21 25 25 O 1.35415 * 119.32045 * 180.29080 * 24 23 22 26 26 C 1.46502 * 119.99763 * 140.88914 * 9 7 2 27 27 C 1.53002 * 117.50014 * 4.00911 * 26 9 7 28 28 C 1.53000 * 60.00026 * 252.51282 * 27 26 9 29 29 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46796 * 30.00693 * 10 9 7 31 31 H 1.08999 * 109.46893 * 150.00019 * 10 9 7 32 32 H 1.08996 * 109.46758 * 299.99574 * 11 10 9 33 33 H 1.08993 * 109.47375 * 59.99822 * 11 10 9 34 34 H 0.96995 * 120.00138 * 359.97438 * 12 11 10 35 35 H 1.07994 * 120.96442 * 0.02562 * 16 15 13 36 36 H 1.07993 * 120.18370 * 359.95104 * 18 17 16 37 37 H 1.08006 * 119.58050 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.46678 * 180.02562 * 20 19 18 39 39 H 1.08007 * 120.08623 * 179.97438 * 21 20 19 40 40 H 0.96703 * 113.99179 * 270.25239 * 25 24 23 41 41 H 1.09002 * 115.55193 * 149.72355 * 26 9 7 42 42 H 1.08997 * 117.49952 * 0.02562 * 27 26 9 43 43 H 1.08996 * 117.49675 * 145.02527 * 27 26 9 44 44 H 1.09008 * 117.50233 * 252.51001 * 28 27 26 45 45 H 1.08999 * 117.52028 * 107.48053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7424 6 1 3.5686 1.4281 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2968 -1.2501 -0.4660 10 6 3.6779 -0.4692 -1.6455 11 6 3.4609 -1.3097 -2.9055 12 7 3.8426 -0.5289 -4.0849 13 6 3.7346 -1.0695 -5.3148 14 8 3.3208 -2.2053 -5.4454 15 6 4.1185 -0.2829 -6.5027 16 6 4.5924 1.0151 -6.3606 17 6 4.9450 1.7213 -7.5235 18 6 5.4320 3.0379 -7.4543 19 6 5.7640 3.6940 -8.6002 20 6 5.6281 3.0765 -9.8417 21 6 5.1600 1.8022 -9.9452 22 6 4.8064 1.0911 -8.7859 23 7 4.3448 -0.1624 -8.8664 24 6 4.0141 -0.8456 -7.7941 25 8 3.5577 -2.1132 -7.9301 26 6 4.2921 -2.0826 0.2142 27 6 3.8114 -2.9465 1.3819 28 6 4.6661 -1.7060 1.6492 29 1 -0.4850 0.8400 -0.0004 30 1 3.0651 0.4306 -1.6990 31 1 4.7287 -0.1893 -1.5719 32 1 4.0737 -2.2094 -2.8520 33 1 2.4101 -1.5896 -2.9790 34 1 4.1723 0.3774 -3.9807 35 1 4.6880 1.4680 -5.3849 36 1 5.5412 3.5269 -6.4977 37 1 6.1386 4.7056 -8.5460 38 1 5.8984 3.6173 -10.7366 39 1 5.0607 1.3391 -10.9159 40 1 2.5984 -2.1766 -8.0346 41 1 5.0796 -2.4878 -0.4212 42 1 2.7545 -2.8958 1.6437 43 1 4.2825 -3.9204 1.5147 44 1 5.6996 -1.8637 1.9579 45 1 4.1720 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493396578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 16.843049 kcal Electronic energy + Delta-G solvation = -28661.433323 eV Core-core repulsion = 24645.251348 eV Total energy + Delta-G solvation = -4016.181975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22054 -40.59013 -39.25791 -38.89252 -36.90732 -36.38581 -35.14792 -34.61018 -33.27133 -31.61397 -30.76825 -29.40560 -26.40471 -25.73968 -24.84355 -23.92202 -23.12643 -22.90799 -22.11395 -21.43643 -20.18506 -19.50581 -18.90022 -18.23833 -17.62106 -17.40603 -17.24892 -16.81310 -16.55460 -16.26873 -15.87898 -15.55129 -15.46811 -15.33202 -14.87371 -14.83990 -14.50456 -14.38848 -14.30753 -14.11910 -13.54108 -13.34977 -13.01724 -12.69625 -12.66187 -12.51419 -12.45953 -12.42131 -12.09862 -11.83503 -11.76137 -11.70243 -11.34010 -11.31869 -10.98677 -10.61457 -10.57280 -10.19519 -9.77452 -9.30908 -8.68076 -8.21324 -5.63276 -0.91250 -0.54898 0.78626 1.26538 1.40399 1.43662 1.55014 1.92083 2.12412 2.40780 2.48835 2.96128 3.00410 3.18324 3.33451 3.36643 3.43836 3.52906 3.72145 3.99443 4.12555 4.17158 4.19180 4.28324 4.29175 4.32089 4.39238 4.48388 4.53028 4.57766 4.60572 4.86523 4.91832 4.95655 5.02240 5.03206 5.09291 5.26712 5.28971 5.34589 5.37589 5.45797 5.54495 5.81839 5.93021 6.20928 6.38942 6.48826 6.72488 6.95756 7.11530 7.58946 7.98703 8.97652 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002746 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.005050 B =10195.441888 C =11007.452073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.019 4.019 3 Si 0.939 3.061 4 H -0.255 1.255 5 H -0.312 1.312 6 H -0.254 1.254 7 C -0.260 4.260 8 H 0.040 0.960 9 N -0.581 5.581 10 C 0.129 3.871 11 C 0.119 3.881 12 N -0.708 5.708 13 C 0.559 3.441 14 O -0.560 6.560 15 C -0.220 4.220 16 C 0.016 3.984 17 C -0.136 4.136 18 C -0.082 4.082 19 C -0.119 4.119 20 C -0.068 4.068 21 C -0.127 4.127 22 C 0.143 3.857 23 N -0.523 5.523 24 C 0.375 3.625 25 O -0.479 6.479 26 C 0.103 3.897 27 C -0.192 4.192 28 C -0.205 4.205 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.411 0.589 35 H 0.182 0.818 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.417 0.583 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.238 11.499 -17.280 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.216 4.216 3 Si 0.767 3.233 4 H -0.181 1.181 5 H -0.241 1.241 6 H -0.178 1.178 7 C -0.390 4.390 8 H 0.057 0.943 9 N -0.301 5.301 10 C 0.004 3.996 11 C -0.007 4.007 12 N -0.361 5.361 13 C 0.345 3.655 14 O -0.440 6.440 15 C -0.227 4.227 16 C -0.010 4.010 17 C -0.138 4.138 18 C -0.100 4.100 19 C -0.136 4.136 20 C -0.087 4.087 21 C -0.146 4.146 22 C 0.022 3.978 23 N -0.243 5.243 24 C 0.181 3.819 25 O -0.288 6.288 26 C -0.004 4.004 27 C -0.231 4.231 28 C -0.246 4.246 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.248 0.752 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.158 0.842 40 H 0.279 0.721 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.272 10.241 -18.136 26.431 hybrid contribution -1.073 0.819 1.109 1.747 sum 15.199 11.060 -17.028 25.363 Atomic orbital electron populations 1.70028 1.08017 1.27640 1.53152 1.26188 0.95622 1.01574 0.98168 0.85951 0.79365 0.79519 0.78506 1.18098 1.24110 1.17825 1.18511 0.88005 0.93207 1.39280 0.94252 1.43596 1.06573 1.52985 1.26913 1.21444 1.00099 0.93462 0.84634 1.21848 0.99208 0.95443 0.84189 1.45752 1.66369 1.18799 1.05215 1.18133 0.77997 0.86054 0.83269 1.90797 1.46994 1.19650 1.86522 1.20959 1.10860 0.97022 0.93841 1.22361 0.87726 0.90468 1.00394 1.19016 1.04330 0.97713 0.92711 1.21462 0.95825 0.91129 1.01609 1.21442 0.98787 1.01886 0.91507 1.21459 0.94065 0.93289 0.99935 1.21031 1.01050 0.95568 0.96940 1.19179 0.95562 0.88650 0.94405 1.67542 1.16060 1.08300 1.32432 1.19326 0.91543 0.84286 0.86726 1.84654 1.29663 1.20023 1.94495 1.21536 0.94157 0.97231 0.87511 1.23049 0.99639 0.95518 1.04849 1.23339 0.99937 0.98089 1.03190 0.92769 0.93257 0.89411 0.91955 0.94606 0.75165 0.80126 0.81746 0.81630 0.81692 0.84152 0.72135 0.85659 0.91473 0.87188 0.86908 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.69 13.97 21.65 0.30 -57.39 16 2 C -0.02 -1.03 5.28 84.86 0.45 -0.59 16 3 Si 0.94 42.26 25.32 68.60 1.74 44.00 16 4 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 5 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.26 -14.15 8.93 84.03 0.75 -13.40 16 8 H 0.04 2.44 6.85 -2.91 -0.02 2.42 16 9 N -0.58 -25.46 2.38 -678.03 -1.61 -27.07 16 10 C 0.13 4.75 4.68 86.38 0.40 5.15 16 11 C 0.12 4.34 6.00 86.38 0.52 4.86 16 12 N -0.71 -20.60 5.51 -466.25 -2.57 -23.17 16 13 C 0.56 18.16 7.77 86.70 0.67 18.83 16 14 O -0.56 -22.87 15.14 17.02 0.26 -22.61 16 15 C -0.22 -5.92 5.90 -19.92 -0.12 -6.04 16 16 C 0.02 0.31 9.38 23.00 0.22 0.53 16 17 C -0.14 -2.47 5.74 -21.28 -0.12 -2.59 16 18 C -0.08 -0.88 9.77 22.35 0.22 -0.66 16 19 C -0.12 -0.91 9.96 22.05 0.22 -0.69 16 20 C -0.07 -0.63 9.94 22.04 0.22 -0.41 16 21 C -0.13 -2.06 9.97 22.34 0.22 -1.83 16 22 C 0.14 3.21 6.61 40.27 0.27 3.48 16 23 N -0.52 -14.61 10.33 -301.41 -3.11 -17.72 16 24 C 0.38 11.07 7.74 85.50 0.66 11.74 16 25 O -0.48 -14.66 11.60 -66.08 -0.77 -15.43 16 26 C 0.10 3.76 6.57 44.99 0.30 4.06 16 27 C -0.19 -7.01 9.80 30.59 0.30 -6.71 16 28 C -0.21 -7.02 10.35 30.59 0.32 -6.71 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.05 1.96 3.45 -2.39 -0.01 1.95 16 31 H 0.09 2.55 8.07 -2.39 -0.02 2.54 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 8.66 6.54 -92.71 -0.61 8.06 16 35 H 0.18 2.04 6.47 -2.91 -0.02 2.02 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.42 9.67 9.06 -74.06 -0.67 9.00 16 41 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.07 2.95 6.44 -2.39 -0.02 2.94 16 43 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -80.30 375.62 -0.55 -80.85 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.28 Total: 29.53 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.49 Total: 9.01 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -6.99 Total: -125.35 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.51 Total: -38.04 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.74 Total: 44.00 kcal Total: -80.30 -0.55 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493396578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.697 kcal (2) G-P(sol) polarization free energy of solvation -80.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds