Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47071 * 299.99441 * 3 2 1 6 6 H 1.48504 * 109.47139 * 59.99761 * 3 2 1 7 7 C 1.38809 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00274 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47352 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47199 * 59.99513 * 11 10 9 13 13 O 1.42909 * 109.47020 * 300.00283 * 11 10 9 14 14 C 1.53002 * 109.47455 * 180.02562 * 11 10 9 15 15 N 1.46504 * 109.47287 * 184.99679 * 14 11 10 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 0.97005 * 119.99789 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99867 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46784 * 60.00324 * 10 9 7 33 33 H 1.08997 * 109.47241 * 300.00560 * 10 9 7 34 34 H 0.96700 * 113.99477 * 299.99831 * 13 11 10 35 35 H 1.08998 * 109.46793 * 64.99943 * 14 11 10 36 36 H 1.08999 * 109.46495 * 304.99822 * 14 11 10 37 37 H 0.97001 * 119.99756 * 0.02562 * 15 14 11 38 38 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 42 42 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 45 45 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4375 -4.7617 -0.8903 13 8 0.2418 -4.7442 1.1664 14 6 1.8289 -6.1448 0.0005 15 7 0.8815 -7.2557 -0.1204 16 6 1.3316 -8.5258 -0.1419 17 8 2.5238 -8.7497 -0.0606 18 6 0.3765 -9.6458 -0.2644 19 6 0.8341 -10.9708 -0.2873 20 6 -0.0958 -11.9843 -0.4037 21 6 -1.4496 -11.6593 -0.4935 22 6 -2.4548 -12.7413 -0.6194 23 6 -3.8107 -12.4297 -0.7105 24 6 -4.7420 -13.4413 -0.8280 25 6 -4.3324 -14.7624 -0.8549 26 6 -2.9885 -15.0777 -0.7649 27 6 -2.0482 -14.0747 -0.6471 28 7 -1.8487 -10.3932 -0.4735 29 6 -0.9947 -9.3996 -0.3588 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8906 33 1 2.6848 -3.7145 -0.8894 34 1 0.7337 -4.7897 1.9977 35 1 2.3860 -6.2421 0.9323 36 1 2.5216 -6.1647 -0.8408 37 1 -0.0697 -7.0770 -0.1857 38 1 1.8886 -11.1931 -0.2164 39 1 0.2207 -13.0166 -0.4242 40 1 -4.1316 -11.3987 -0.6900 41 1 -5.7930 -13.2013 -0.8942 42 1 -5.0649 -15.5508 -0.9475 43 1 -2.6747 -16.1109 -0.7869 44 1 -0.9992 -14.3221 -0.5773 45 1 -1.3574 -8.3826 -0.3414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497078944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = -12.390986 kcal Electronic energy + Delta-G solvation = -27056.008103 eV Core-core repulsion = 23038.558445 eV Total energy + Delta-G solvation = -4017.449658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07925 -39.76867 -38.83473 -37.62704 -34.60791 -34.04778 -33.39582 -32.95028 -31.36146 -31.30917 -30.26070 -28.84920 -25.90731 -24.75312 -24.31333 -22.74711 -22.46277 -21.88966 -21.47462 -20.62073 -18.58298 -17.74043 -17.20829 -17.09782 -16.54153 -16.17536 -16.05796 -15.50265 -15.07588 -14.99222 -14.82741 -14.73073 -14.49213 -14.30628 -13.89748 -13.80038 -13.66796 -13.38574 -13.09474 -13.00588 -12.75473 -12.68461 -12.37154 -11.90146 -11.74050 -11.53170 -10.97814 -10.85131 -10.67909 -10.49865 -10.40372 -10.17962 -10.15434 -9.87538 -9.80616 -9.53941 -9.39138 -9.25911 -8.92976 -8.69767 -6.95978 -5.78095 -3.07931 -0.15700 0.81288 0.96985 1.13062 2.60943 2.90509 3.27954 3.42275 3.47860 3.50185 3.56769 3.67062 4.09628 4.36602 4.40277 4.47361 4.51480 4.55083 4.56942 4.67752 4.70744 4.81091 4.86543 5.00221 5.13742 5.14424 5.19237 5.38905 5.53114 5.53394 5.56402 5.62080 5.65936 5.75961 5.90195 5.92864 6.04674 6.08904 6.14081 6.17167 6.26868 6.47570 6.49879 6.63589 7.28124 7.41988 7.67217 7.89375 7.98264 8.39977 9.51902 10.08143 10.43986 11.44202 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024669 B = 0.001598 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.770352 B =17520.076885 C =18522.688376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.552 6.552 14 C 0.090 3.910 15 N -0.714 5.714 16 C 0.561 3.439 17 O -0.538 6.538 18 C -0.188 4.188 19 C -0.012 4.012 20 C -0.172 4.172 21 C 0.189 3.811 22 C -0.057 4.057 23 C -0.075 4.075 24 C -0.127 4.127 25 C -0.106 4.106 26 C -0.126 4.126 27 C -0.097 4.097 28 N -0.480 5.480 29 C 0.146 3.854 30 H 0.255 0.745 31 H 0.389 0.611 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.374 0.626 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -32.909 -1.150 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.028 3.972 12 H 0.123 0.877 13 O -0.357 6.357 14 C -0.034 4.034 15 N -0.365 5.365 16 C 0.347 3.653 17 O -0.416 6.416 18 C -0.194 4.194 19 C -0.038 4.038 20 C -0.192 4.192 21 C 0.054 3.946 22 C -0.058 4.058 23 C -0.093 4.093 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.116 4.116 28 N -0.188 5.188 29 C -0.014 4.014 30 H 0.065 0.935 31 H 0.224 0.776 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.222 0.778 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.240 0.760 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.591 -32.665 -1.603 33.362 hybrid contribution 1.116 0.882 0.401 1.478 sum -5.476 -31.783 -1.202 32.274 Atomic orbital electron populations 1.69689 1.05108 1.25580 1.57344 1.24760 0.95528 0.97732 1.02797 0.86113 0.78771 0.84043 0.77215 1.20540 1.21816 1.21816 1.19265 0.91038 0.84084 1.43153 0.91147 1.42229 1.06125 0.99334 1.89357 1.21188 0.93485 0.86595 0.98939 1.22405 0.93331 0.91680 0.89758 0.87694 1.86580 1.36978 1.96410 1.15722 1.22181 0.92268 0.85707 1.03289 1.45849 1.11425 1.05333 1.73922 1.17973 0.87819 0.82633 0.76853 1.90791 1.16163 1.84643 1.50000 1.21065 0.95197 0.95052 1.08038 1.21671 1.01170 0.90616 0.90367 1.22062 0.92899 1.00929 1.03282 1.19982 0.91250 0.90576 0.92801 1.18521 0.92591 0.91253 1.03435 1.21411 0.91695 1.00465 0.95767 1.21212 0.99906 0.92739 1.00619 1.21339 0.96085 0.96677 0.98364 1.21076 0.93087 0.99265 1.00931 1.21268 1.00045 0.91543 0.98761 1.67634 1.38676 0.99224 1.13260 1.22997 0.88241 0.98607 0.91566 0.93512 0.77632 0.95894 0.95333 0.77848 0.90726 0.90108 0.75956 0.83175 0.83797 0.84464 0.85513 0.85795 0.85551 0.85424 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.10 5.49 -59.91 -0.33 -18.43 16 10 C 0.13 2.39 5.92 -4.05 -0.02 2.37 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 13 O -0.55 -8.43 13.03 -35.23 -0.46 -8.89 16 14 C 0.09 1.12 5.31 -4.04 -0.02 1.10 16 15 N -0.71 -8.00 5.46 -61.29 -0.33 -8.34 16 16 C 0.56 6.97 7.77 -12.40 -0.10 6.88 16 17 O -0.54 -8.40 16.41 5.30 0.09 -8.31 16 18 C -0.19 -1.97 5.89 -104.78 -0.62 -2.59 16 19 C -0.01 -0.11 9.70 -38.92 -0.38 -0.49 16 20 C -0.17 -1.38 9.44 -39.18 -0.37 -1.75 16 21 C 0.19 1.80 6.73 -82.88 -0.56 1.24 16 22 C -0.06 -0.49 5.88 -104.91 -0.62 -1.10 16 23 C -0.07 -0.61 9.57 -39.23 -0.38 -0.99 16 24 C -0.13 -0.83 10.03 -39.63 -0.40 -1.23 16 25 C -0.11 -0.61 10.04 -39.51 -0.40 -1.00 16 26 C -0.13 -0.71 10.03 -39.64 -0.40 -1.11 16 27 C -0.10 -0.64 9.42 -39.23 -0.37 -1.01 16 28 N -0.48 -5.02 9.40 -9.45 -0.09 -5.11 16 29 C 0.15 1.41 10.70 -17.16 -0.18 1.23 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 10.41 7.54 -40.82 -0.31 10.10 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.37 4.78 9.04 45.56 0.41 5.20 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.40 3.86 6.52 -40.82 -0.27 3.59 16 38 H 0.15 1.28 7.73 -52.49 -0.41 0.87 16 39 H 0.14 0.73 6.17 -52.49 -0.32 0.41 16 40 H 0.14 1.15 7.53 -52.49 -0.40 0.76 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.12 0.44 8.06 -52.48 -0.42 0.01 16 43 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.13 0.56 6.17 -52.48 -0.32 0.24 16 45 H 0.16 1.25 6.41 -52.49 -0.34 0.91 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.02 386.88 -9.60 -44.61 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.87 Total: 13.41 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -5.13 Total: -4.65 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.03 Total: -59.34 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.37 Total: -17.20 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.02 -9.60 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497078944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds