Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47071 * 299.99441 * 3 2 1 6 6 H 1.48504 * 109.47139 * 59.99761 * 3 2 1 7 7 C 1.38809 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00274 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47352 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47199 * 59.99513 * 11 10 9 13 13 O 1.42909 * 109.47020 * 300.00283 * 11 10 9 14 14 C 1.53002 * 109.47455 * 180.02562 * 11 10 9 15 15 N 1.46504 * 109.47287 * 184.99679 * 14 11 10 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 0.97005 * 119.99789 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99867 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46784 * 60.00324 * 10 9 7 33 33 H 1.08997 * 109.47241 * 300.00560 * 10 9 7 34 34 H 0.96700 * 113.99477 * 299.99831 * 13 11 10 35 35 H 1.08998 * 109.46793 * 64.99943 * 14 11 10 36 36 H 1.08999 * 109.46495 * 304.99822 * 14 11 10 37 37 H 0.97001 * 119.99756 * 0.02562 * 15 14 11 38 38 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 42 42 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 45 45 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4375 -4.7617 -0.8903 13 8 0.2418 -4.7442 1.1664 14 6 1.8289 -6.1448 0.0005 15 7 0.8815 -7.2557 -0.1204 16 6 1.3316 -8.5258 -0.1419 17 8 2.5238 -8.7497 -0.0606 18 6 0.3765 -9.6458 -0.2644 19 6 0.8341 -10.9708 -0.2873 20 6 -0.0958 -11.9843 -0.4037 21 6 -1.4496 -11.6593 -0.4935 22 6 -2.4548 -12.7413 -0.6194 23 6 -3.8107 -12.4297 -0.7105 24 6 -4.7420 -13.4413 -0.8280 25 6 -4.3324 -14.7624 -0.8549 26 6 -2.9885 -15.0777 -0.7649 27 6 -2.0482 -14.0747 -0.6471 28 7 -1.8487 -10.3932 -0.4735 29 6 -0.9947 -9.3996 -0.3588 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6847 -3.7145 0.8906 33 1 2.6848 -3.7145 -0.8894 34 1 0.7337 -4.7897 1.9977 35 1 2.3860 -6.2421 0.9323 36 1 2.5216 -6.1647 -0.8408 37 1 -0.0697 -7.0770 -0.1857 38 1 1.8886 -11.1931 -0.2164 39 1 0.2207 -13.0166 -0.4242 40 1 -4.1316 -11.3987 -0.6900 41 1 -5.7930 -13.2013 -0.8942 42 1 -5.0649 -15.5508 -0.9475 43 1 -2.6747 -16.1109 -0.7869 44 1 -0.9992 -14.3221 -0.5773 45 1 -1.3574 -8.3826 -0.3414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497078944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -37.973165 kcal Electronic energy + Delta-G solvation = -27057.117430 eV Core-core repulsion = 23038.558445 eV Total energy + Delta-G solvation = -4018.558984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83279 -40.59086 -39.49461 -38.86536 -36.10328 -35.46633 -34.07487 -33.63519 -33.17928 -31.78917 -31.20348 -30.02822 -27.27272 -25.75914 -25.05591 -24.27649 -23.05499 -22.77197 -22.54684 -21.55001 -19.49516 -19.12278 -18.36667 -18.03779 -17.33278 -17.17970 -17.05535 -16.44233 -16.42752 -16.07038 -15.70159 -15.53626 -15.42295 -15.22033 -15.12468 -14.90237 -14.52211 -14.32517 -14.20255 -14.05210 -13.87732 -13.57175 -13.39248 -13.25005 -12.95258 -12.78859 -12.20306 -12.12278 -12.00759 -11.96003 -11.81064 -11.47743 -11.13065 -11.01381 -10.92582 -10.81654 -10.57023 -10.24519 -9.86614 -9.29270 -9.00763 -7.95057 -5.24373 -0.83997 0.12989 0.49453 0.54156 1.47988 1.48537 1.58687 1.75310 1.94909 2.55877 2.63018 2.93124 3.06013 3.36223 3.44669 3.47497 3.58267 3.61992 3.73830 3.86670 4.01646 4.03126 4.13358 4.17082 4.20059 4.30970 4.40517 4.50430 4.59281 4.61297 4.64419 4.69232 4.84274 4.93990 4.97058 5.02323 5.16916 5.18747 5.25776 5.37538 5.48745 5.55865 5.57766 5.62054 6.04356 6.26195 6.35943 6.72194 6.79226 7.02902 7.33654 8.09212 8.32167 9.28270 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024669 B = 0.001598 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.770352 B =17520.076885 C =18522.688376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.122 3.878 11 C 0.107 3.893 12 H 0.103 0.897 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.706 5.706 16 C 0.564 3.436 17 O -0.573 6.573 18 C -0.203 4.203 19 C -0.016 4.016 20 C -0.165 4.165 21 C 0.182 3.818 22 C -0.080 4.080 23 C -0.094 4.094 24 C -0.136 4.136 25 C -0.106 4.106 26 C -0.128 4.128 27 C -0.099 4.099 28 N -0.501 5.501 29 C 0.145 3.855 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.385 0.615 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 -35.188 -1.191 35.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.047 3.953 12 H 0.121 0.879 13 O -0.370 6.370 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.352 3.648 17 O -0.454 6.454 18 C -0.208 4.208 19 C -0.042 4.042 20 C -0.184 4.184 21 C 0.047 3.953 22 C -0.081 4.081 23 C -0.113 4.113 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.146 4.146 27 C -0.118 4.118 28 N -0.209 5.209 29 C -0.015 4.015 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.143 -34.974 -1.638 35.547 hybrid contribution 0.932 1.426 0.414 1.753 sum -5.211 -33.548 -1.225 33.973 Atomic orbital electron populations 1.69843 1.06648 1.25988 1.59316 1.25581 0.96379 1.01151 1.03618 0.85072 0.78247 0.79765 0.76642 1.18978 1.22045 1.22069 1.19688 0.91546 0.85345 1.41371 0.90526 1.42408 1.05791 1.00712 1.89346 1.21403 0.94229 0.85708 0.99250 1.22117 0.92312 0.91204 0.89679 0.87929 1.86562 1.37573 1.96403 1.16421 1.21934 0.91983 0.84809 1.03518 1.45734 1.11736 1.04844 1.73400 1.18205 0.87591 0.83066 0.75934 1.90768 1.17625 1.85135 1.51903 1.20955 0.95040 0.94925 1.09888 1.21850 1.01789 0.90477 0.90058 1.22326 0.91931 1.02146 1.02041 1.20358 0.92299 0.90572 0.92111 1.18673 0.92455 0.91931 1.05054 1.21463 0.92342 1.00471 0.97015 1.21440 1.00416 0.93002 1.00483 1.21704 0.96927 0.96801 0.97022 1.21458 0.92908 1.00393 0.99805 1.21559 1.01489 0.90788 0.97948 1.67664 1.39137 0.99945 1.14194 1.23191 0.87952 0.99229 0.91131 0.94027 0.79058 0.95035 0.94754 0.76574 0.90399 0.90091 0.74912 0.82573 0.80723 0.85710 0.84150 0.83393 0.82925 0.83325 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -36.89 5.49 -343.46 -1.89 -38.78 16 10 C 0.12 4.49 5.92 86.38 0.51 5.00 16 11 C 0.11 3.05 3.09 30.59 0.09 3.15 16 12 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 13 O -0.56 -16.78 13.03 -148.98 -1.94 -18.73 16 14 C 0.10 2.44 5.31 86.38 0.46 2.90 16 15 N -0.71 -15.31 5.46 -466.11 -2.54 -17.85 16 16 C 0.56 13.80 7.77 86.75 0.67 14.47 16 17 O -0.57 -17.76 16.41 -3.94 -0.06 -17.83 16 18 C -0.20 -4.17 5.89 -19.96 -0.12 -4.29 16 19 C -0.02 -0.28 9.70 22.70 0.22 -0.06 16 20 C -0.17 -2.41 9.44 22.53 0.21 -2.20 16 21 C 0.18 3.34 6.73 41.97 0.28 3.62 16 22 C -0.08 -1.30 5.88 -20.05 -0.12 -1.42 16 23 C -0.09 -1.55 9.57 22.50 0.22 -1.33 16 24 C -0.14 -1.65 10.03 22.24 0.22 -1.42 16 25 C -0.11 -0.97 10.04 22.32 0.22 -0.75 16 26 C -0.13 -1.09 10.03 22.23 0.22 -0.87 16 27 C -0.10 -1.09 9.42 22.50 0.21 -0.87 16 28 N -0.50 -10.52 9.40 -183.83 -1.73 -12.25 16 29 C 0.14 2.79 10.70 85.08 0.91 3.70 16 30 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.38 20.42 7.54 -92.71 -0.70 19.72 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.39 9.48 9.04 -74.06 -0.67 8.82 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 7.57 6.52 -92.71 -0.60 6.96 16 38 H 0.16 2.52 7.73 -2.91 -0.02 2.50 16 39 H 0.18 1.31 6.17 -2.91 -0.02 1.29 16 40 H 0.12 2.24 7.53 -2.91 -0.02 2.22 16 41 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.15 0.47 8.06 -2.91 -0.02 0.44 16 44 H 0.15 0.86 6.17 -2.91 -0.02 0.84 16 45 H 0.18 2.66 6.41 -2.91 -0.02 2.64 16 Total: -1.00 -75.35 386.88 -1.23 -76.58 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.91 Total: 37.10 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.53 Total: 2.88 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.88 Total: -128.13 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -2.01 Total: -36.55 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.35 -1.23 -76.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497078944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds