Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00091 * 2 1 4 4 H 1.48493 * 109.46951 * 269.99656 * 3 2 1 5 5 H 1.48502 * 109.46981 * 29.99604 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99914 * 3 2 1 7 7 C 1.38809 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00350 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00179 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47119 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00299 * 11 10 9 13 13 O 1.42905 * 109.46921 * 65.00030 * 11 10 9 14 14 C 1.52997 * 109.47232 * 185.00149 * 11 10 9 15 15 N 1.46500 * 109.47473 * 180.02562 * 14 11 10 16 16 C 1.34767 * 120.00203 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00288 * 359.97438 * 16 15 14 18 18 C 1.47712 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.40188 * 120.45746 * 180.02562 * 18 16 15 20 20 C 1.38054 * 118.38099 * 179.97438 * 19 18 16 21 21 C 1.39510 * 119.21604 * 359.97438 * 20 19 18 22 22 C 1.48217 * 119.57421 * 180.02562 * 21 20 19 23 23 C 1.39437 * 120.12727 * 359.72707 * 22 21 20 24 24 C 1.37993 * 119.86713 * 179.67707 * 23 22 21 25 25 C 1.38339 * 120.12612 * 0.61767 * 24 23 22 26 26 C 1.38334 * 120.26740 * 359.67881 * 25 24 23 27 27 C 1.37994 * 120.12614 * 359.97438 * 26 25 24 28 28 N 1.32772 * 120.85651 * 359.97438 * 21 20 19 29 29 C 1.31525 * 121.76967 * 359.72651 * 28 21 20 30 30 H 0.97000 * 120.00085 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99612 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46646 * 59.99952 * 10 9 7 33 33 H 1.08994 * 109.46912 * 300.00196 * 10 9 7 34 34 H 0.96696 * 114.00036 * 60.00010 * 13 11 10 35 35 H 1.09001 * 109.46832 * 300.00199 * 14 11 10 36 36 H 1.09002 * 109.47153 * 60.00008 * 14 11 10 37 37 H 0.97004 * 119.99396 * 359.97438 * 15 14 11 38 38 H 1.07998 * 120.81358 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.38800 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.06392 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.93456 * 180.31866 * 24 23 22 42 42 H 1.08009 * 119.86439 * 179.69563 * 25 24 23 43 43 H 1.08002 * 119.94057 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.06414 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.65462 * 180.29031 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3800 -4.7126 0.8432 13 8 0.3211 -4.8120 -1.2196 14 6 1.8247 -6.1411 0.1269 15 7 0.8728 -7.2547 0.1269 16 6 1.3187 -8.5224 0.2282 17 8 2.5109 -8.7420 0.3190 18 6 0.3588 -9.6452 0.2288 19 6 0.8121 -10.9675 0.3341 20 6 -0.1223 -11.9838 0.3308 21 6 -1.4760 -11.6638 0.2242 22 6 -2.4860 -12.7485 0.2205 23 6 -2.0834 -14.0800 0.3172 24 6 -3.0287 -15.0853 0.3200 25 6 -4.3727 -14.7749 0.2141 26 6 -4.7777 -13.4562 0.1116 27 6 -3.8420 -12.4419 0.1150 28 7 -1.8714 -10.4000 0.1270 29 6 -1.0130 -9.4035 0.1323 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.8668 -4.9036 -2.0126 35 1 2.5085 -6.2481 -0.7151 36 1 2.3912 -6.1470 1.0581 37 1 -0.0785 -7.0795 0.0541 38 1 1.8666 -11.1860 0.4159 39 1 0.1910 -13.0142 0.4107 40 1 -1.0341 -14.3237 0.3948 41 1 -2.7184 -16.1166 0.4001 42 1 -5.1087 -15.5654 0.2117 43 1 -5.8284 -13.2198 0.0296 44 1 -4.1594 -11.4127 0.0353 45 1 -1.3727 -8.3880 0.0561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497078945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -12.401973 kcal Electronic energy + Delta-G solvation = -27060.427582 eV Core-core repulsion = 23042.977448 eV Total energy + Delta-G solvation = -4017.450134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07725 -39.76843 -38.83457 -37.63215 -34.59379 -34.06530 -33.39405 -32.94733 -31.37389 -31.30794 -30.25773 -28.84860 -25.90559 -24.75099 -24.31181 -22.74150 -22.45843 -21.88359 -21.48193 -20.62664 -18.58366 -17.74022 -17.21287 -17.09386 -16.54014 -16.17980 -16.05448 -15.50252 -15.07225 -14.99168 -14.83671 -14.73678 -14.49061 -14.30124 -13.90101 -13.79880 -13.65738 -13.38197 -13.09235 -13.00644 -12.75224 -12.70250 -12.36582 -11.90452 -11.73949 -11.53089 -10.98589 -10.83266 -10.67995 -10.49667 -10.40225 -10.19554 -10.17773 -9.87331 -9.80517 -9.54779 -9.39038 -9.25568 -8.92504 -8.69617 -6.96235 -5.78054 -3.07929 -0.15544 0.81432 0.97056 1.13184 2.61103 2.90541 3.28063 3.42695 3.47747 3.49543 3.56974 3.67207 4.09816 4.36772 4.40480 4.47480 4.51859 4.55159 4.57013 4.67462 4.70977 4.81245 4.86640 5.00326 5.13852 5.14588 5.18313 5.39032 5.53295 5.53573 5.57385 5.62258 5.66044 5.76200 5.90156 5.92974 6.04755 6.09012 6.13835 6.17172 6.26923 6.47766 6.49964 6.63330 7.28810 7.42216 7.66719 7.87673 7.98624 8.39903 9.51723 10.07774 10.43380 11.44227 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.001598 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.146675 B =17513.930620 C =18519.196780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.089 3.911 15 N -0.713 5.713 16 C 0.561 3.439 17 O -0.538 6.538 18 C -0.188 4.188 19 C -0.012 4.012 20 C -0.172 4.172 21 C 0.189 3.811 22 C -0.057 4.057 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.106 4.106 26 C -0.127 4.127 27 C -0.075 4.075 28 N -0.480 5.480 29 C 0.146 3.854 30 H 0.256 0.744 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.374 0.626 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -32.916 0.290 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.370 5.370 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.035 4.035 15 N -0.365 5.365 16 C 0.347 3.653 17 O -0.416 6.416 18 C -0.193 4.193 19 C -0.038 4.038 20 C -0.192 4.192 21 C 0.054 3.946 22 C -0.058 4.058 23 C -0.116 4.116 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.093 4.093 28 N -0.188 5.188 29 C -0.014 4.014 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.221 0.779 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.241 0.759 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.704 -32.642 0.705 33.331 hybrid contribution 1.152 0.864 -0.311 1.474 sum -5.552 -31.778 0.394 32.262 Atomic orbital electron populations 1.69672 1.05116 1.25711 1.57262 1.24756 0.95525 0.97729 1.02761 0.86181 0.78644 0.83748 0.77540 1.21672 1.21715 1.20740 1.19218 0.91012 0.84096 1.43295 0.91194 1.42231 1.06056 0.99370 1.89383 1.21194 0.93475 0.86552 0.98918 1.22419 0.94656 0.91754 0.88353 0.87602 1.86579 1.37532 1.96228 1.15418 1.22167 0.92143 0.85685 1.03487 1.45831 1.11412 1.05385 1.73885 1.17975 0.87849 0.82636 0.76828 1.90792 1.16215 1.84698 1.49907 1.21064 0.95170 0.95062 1.08052 1.21672 1.01173 0.90608 0.90374 1.22065 0.92865 1.00907 1.03342 1.19979 0.91259 0.90603 0.92771 1.18520 0.92554 0.91249 1.03475 1.21270 1.00034 0.91544 0.98770 1.21079 0.93051 0.99253 1.00978 1.21339 0.96109 0.96708 0.98311 1.21210 0.99891 0.92735 1.00638 1.21413 0.91671 1.00444 0.95810 1.67635 1.38677 0.99179 1.13302 1.23003 0.88201 0.98567 0.91636 0.93454 0.77718 0.95328 0.95869 0.77910 0.90750 0.90097 0.75886 0.83176 0.83800 0.85425 0.85552 0.85797 0.85514 0.84462 0.81835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.11 5.55 -59.91 -0.33 -18.45 16 10 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 13 O -0.55 -8.31 13.03 -35.23 -0.46 -8.77 16 14 C 0.09 1.11 5.34 -4.04 -0.02 1.09 16 15 N -0.71 -8.00 5.40 -61.30 -0.33 -8.33 16 16 C 0.56 6.97 7.77 -12.39 -0.10 6.88 16 17 O -0.54 -8.40 16.41 5.30 0.09 -8.32 16 18 C -0.19 -1.97 5.89 -104.78 -0.62 -2.59 16 19 C -0.01 -0.11 9.70 -38.92 -0.38 -0.49 16 20 C -0.17 -1.38 9.44 -39.18 -0.37 -1.75 16 21 C 0.19 1.80 6.73 -82.89 -0.56 1.24 16 22 C -0.06 -0.49 5.88 -104.91 -0.62 -1.10 16 23 C -0.10 -0.64 9.42 -39.22 -0.37 -1.01 16 24 C -0.13 -0.71 10.03 -39.63 -0.40 -1.11 16 25 C -0.11 -0.61 10.04 -39.51 -0.40 -1.00 16 26 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 27 C -0.07 -0.62 9.57 -39.23 -0.38 -0.99 16 28 N -0.48 -5.03 9.40 -9.46 -0.09 -5.12 16 29 C 0.15 1.42 10.70 -17.16 -0.18 1.23 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 10.38 7.67 -40.82 -0.31 10.07 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.37 4.65 9.05 45.56 0.41 5.06 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 3.89 6.40 -40.82 -0.26 3.63 16 38 H 0.15 1.28 7.73 -52.49 -0.41 0.87 16 39 H 0.14 0.73 6.17 -52.49 -0.32 0.41 16 40 H 0.13 0.56 6.17 -52.49 -0.32 0.24 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.12 0.44 8.06 -52.48 -0.42 0.01 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.14 1.15 7.53 -52.48 -0.40 0.76 16 45 H 0.16 1.26 6.41 -52.49 -0.34 0.92 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -34.95 386.88 -9.60 -44.55 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.87 Total: 13.38 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -5.13 Total: -4.66 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.03 Total: -59.36 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.37 Total: -17.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.95 -9.60 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497078945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.150 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds