Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00091 * 2 1 4 4 H 1.48493 * 109.46951 * 269.99656 * 3 2 1 5 5 H 1.48502 * 109.46981 * 29.99604 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99914 * 3 2 1 7 7 C 1.38809 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00350 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00179 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47119 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00299 * 11 10 9 13 13 O 1.42905 * 109.46921 * 65.00030 * 11 10 9 14 14 C 1.52997 * 109.47232 * 185.00149 * 11 10 9 15 15 N 1.46500 * 109.47473 * 180.02562 * 14 11 10 16 16 C 1.34767 * 120.00203 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00288 * 359.97438 * 16 15 14 18 18 C 1.47712 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.40188 * 120.45746 * 180.02562 * 18 16 15 20 20 C 1.38054 * 118.38099 * 179.97438 * 19 18 16 21 21 C 1.39510 * 119.21604 * 359.97438 * 20 19 18 22 22 C 1.48217 * 119.57421 * 180.02562 * 21 20 19 23 23 C 1.39437 * 120.12727 * 359.72707 * 22 21 20 24 24 C 1.37993 * 119.86713 * 179.67707 * 23 22 21 25 25 C 1.38339 * 120.12612 * 0.61767 * 24 23 22 26 26 C 1.38334 * 120.26740 * 359.67881 * 25 24 23 27 27 C 1.37994 * 120.12614 * 359.97438 * 26 25 24 28 28 N 1.32772 * 120.85651 * 359.97438 * 21 20 19 29 29 C 1.31525 * 121.76967 * 359.72651 * 28 21 20 30 30 H 0.97000 * 120.00085 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99612 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46646 * 59.99952 * 10 9 7 33 33 H 1.08994 * 109.46912 * 300.00196 * 10 9 7 34 34 H 0.96696 * 114.00036 * 60.00010 * 13 11 10 35 35 H 1.09001 * 109.46832 * 300.00199 * 14 11 10 36 36 H 1.09002 * 109.47153 * 60.00008 * 14 11 10 37 37 H 0.97004 * 119.99396 * 359.97438 * 15 14 11 38 38 H 1.07998 * 120.81358 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.38800 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.06392 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.93456 * 180.31866 * 24 23 22 42 42 H 1.08009 * 119.86439 * 179.69563 * 25 24 23 43 43 H 1.08002 * 119.94057 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.06414 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.65462 * 180.29031 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3800 -4.7126 0.8432 13 8 0.3211 -4.8120 -1.2196 14 6 1.8247 -6.1411 0.1269 15 7 0.8728 -7.2547 0.1269 16 6 1.3187 -8.5224 0.2282 17 8 2.5109 -8.7420 0.3190 18 6 0.3588 -9.6452 0.2288 19 6 0.8121 -10.9675 0.3341 20 6 -0.1223 -11.9838 0.3308 21 6 -1.4760 -11.6638 0.2242 22 6 -2.4860 -12.7485 0.2205 23 6 -2.0834 -14.0800 0.3172 24 6 -3.0287 -15.0853 0.3200 25 6 -4.3727 -14.7749 0.2141 26 6 -4.7777 -13.4562 0.1116 27 6 -3.8420 -12.4419 0.1150 28 7 -1.8714 -10.4000 0.1270 29 6 -1.0130 -9.4035 0.1323 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.8668 -4.9036 -2.0126 35 1 2.5085 -6.2481 -0.7151 36 1 2.3912 -6.1470 1.0581 37 1 -0.0785 -7.0795 0.0541 38 1 1.8666 -11.1860 0.4159 39 1 0.1910 -13.0142 0.4107 40 1 -1.0341 -14.3237 0.3948 41 1 -2.7184 -16.1166 0.4001 42 1 -5.1087 -15.5654 0.2117 43 1 -5.8284 -13.2198 0.0296 44 1 -4.1594 -11.4127 0.0353 45 1 -1.3727 -8.3880 0.0561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497078945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = -37.922436 kcal Electronic energy + Delta-G solvation = -27061.534232 eV Core-core repulsion = 23042.977448 eV Total energy + Delta-G solvation = -4018.556785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83202 -40.59196 -39.49483 -38.86371 -36.11545 -35.45266 -34.07399 -33.63343 -33.19171 -31.78843 -31.20079 -30.02872 -27.27126 -25.75771 -25.05450 -24.27286 -23.05108 -22.78208 -22.54329 -21.55141 -19.49541 -19.12312 -18.36677 -18.03627 -17.31529 -17.20249 -17.05470 -16.44272 -16.42525 -16.06708 -15.70825 -15.53326 -15.41853 -15.21435 -15.12480 -14.90138 -14.52413 -14.32479 -14.21870 -14.04978 -13.86592 -13.57031 -13.39168 -13.25188 -12.96016 -12.75450 -12.20267 -12.15989 -12.01005 -11.97459 -11.81091 -11.47270 -11.13001 -11.00360 -10.93078 -10.81583 -10.57022 -10.24340 -9.86557 -9.29201 -9.01005 -7.94999 -5.24408 -0.83915 0.13025 0.49483 0.54203 1.47911 1.49530 1.57990 1.75379 1.94750 2.56049 2.63061 2.93205 3.06063 3.36114 3.45787 3.47466 3.57612 3.62220 3.73973 3.86684 4.01528 4.01836 4.13412 4.17166 4.20702 4.31029 4.40201 4.50483 4.59330 4.61307 4.64461 4.69205 4.84339 4.94268 4.97162 5.02387 5.16959 5.19886 5.24557 5.37590 5.48437 5.55898 5.57817 5.62092 6.04393 6.26060 6.36374 6.72291 6.79181 7.03198 7.33431 8.08786 8.31587 9.28142 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.001598 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.146675 B =17513.930620 C =18519.196780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.107 3.893 12 H 0.102 0.898 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.705 5.705 16 C 0.564 3.436 17 O -0.574 6.574 18 C -0.203 4.203 19 C -0.016 4.016 20 C -0.165 4.165 21 C 0.182 3.818 22 C -0.080 4.080 23 C -0.099 4.099 24 C -0.128 4.128 25 C -0.106 4.106 26 C -0.136 4.136 27 C -0.094 4.094 28 N -0.501 5.501 29 C 0.145 3.855 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.386 0.614 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -35.190 0.276 35.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.047 3.953 12 H 0.119 0.881 13 O -0.369 6.369 14 C -0.023 4.023 15 N -0.357 5.357 16 C 0.352 3.648 17 O -0.454 6.454 18 C -0.208 4.208 19 C -0.042 4.042 20 C -0.184 4.184 21 C 0.047 3.953 22 C -0.081 4.081 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.113 4.113 28 N -0.209 5.209 29 C -0.015 4.015 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.143 0.857 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.258 -34.946 0.682 35.509 hybrid contribution 0.969 1.405 -0.320 1.737 sum -5.288 -33.541 0.361 33.957 Atomic orbital electron populations 1.69829 1.06651 1.26081 1.59224 1.25582 0.96379 1.01162 1.03559 0.85135 0.77708 0.79429 0.77437 1.21394 1.22204 1.19377 1.19653 0.91549 0.85362 1.41555 0.90534 1.42414 1.05722 1.00753 1.89384 1.21411 0.94214 0.85662 0.99230 1.22109 0.93580 0.91295 0.88295 0.88062 1.86561 1.38156 1.96207 1.16015 1.21921 0.91898 0.84800 1.03660 1.45717 1.11699 1.04895 1.73370 1.18207 0.87626 0.83068 0.75900 1.90768 1.17674 1.85189 1.51807 1.20953 0.94996 0.94932 1.09918 1.21851 1.01799 0.90469 0.90054 1.22330 0.91892 1.02118 1.02109 1.20355 0.92314 0.90598 0.92073 1.18672 0.92409 0.91923 1.05107 1.21561 1.01487 0.90790 0.97946 1.21460 0.92868 1.00373 0.99862 1.21704 0.96962 0.96836 0.96953 1.21438 1.00395 0.92990 1.00515 1.21464 0.92323 1.00456 0.97049 1.67665 1.39134 0.99899 1.14242 1.23191 0.87914 0.99173 0.91215 0.94011 0.79145 0.94753 0.95002 0.76539 0.90365 0.90144 0.74872 0.82570 0.80723 0.83325 0.82925 0.83394 0.84150 0.85712 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -36.96 5.55 -343.45 -1.91 -38.87 16 10 C 0.12 4.52 5.90 86.38 0.51 5.03 16 11 C 0.11 3.07 3.09 30.59 0.09 3.16 16 12 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 13 O -0.56 -16.48 13.03 -148.98 -1.94 -18.42 16 14 C 0.10 2.44 5.34 86.38 0.46 2.90 16 15 N -0.71 -15.32 5.40 -466.11 -2.52 -17.84 16 16 C 0.56 13.81 7.77 86.75 0.67 14.48 16 17 O -0.57 -17.77 16.41 -3.94 -0.06 -17.84 16 18 C -0.20 -4.18 5.89 -19.96 -0.12 -4.29 16 19 C -0.02 -0.28 9.70 22.70 0.22 -0.06 16 20 C -0.17 -2.42 9.44 22.53 0.21 -2.20 16 21 C 0.18 3.34 6.73 41.96 0.28 3.63 16 22 C -0.08 -1.30 5.88 -20.05 -0.12 -1.42 16 23 C -0.10 -1.09 9.42 22.50 0.21 -0.87 16 24 C -0.13 -1.09 10.03 22.24 0.22 -0.87 16 25 C -0.11 -0.97 10.04 22.32 0.22 -0.75 16 26 C -0.14 -1.65 10.03 22.23 0.22 -1.42 16 27 C -0.09 -1.55 9.57 22.50 0.22 -1.33 16 28 N -0.50 -10.54 9.40 -183.83 -1.73 -12.27 16 29 C 0.14 2.80 10.70 85.08 0.91 3.71 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.38 20.39 7.67 -92.71 -0.71 19.68 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.39 9.17 9.05 -74.06 -0.67 8.51 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 7.64 6.40 -92.71 -0.59 7.04 16 38 H 0.16 2.52 7.73 -2.91 -0.02 2.50 16 39 H 0.18 1.31 6.17 -2.91 -0.02 1.29 16 40 H 0.15 0.86 6.17 -2.91 -0.02 0.84 16 41 H 0.15 0.47 8.06 -2.91 -0.02 0.44 16 42 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.12 2.24 7.53 -2.91 -0.02 2.22 16 45 H 0.18 2.68 6.41 -2.91 -0.02 2.66 16 Total: -1.00 -75.24 386.88 -1.23 -76.47 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.91 Total: 37.05 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.53 Total: 2.85 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -5.87 Total: -128.21 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.01 Total: -36.26 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.24 -1.23 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497078945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.547 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds