Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99766 * 2 1 4 4 H 1.48497 * 109.46956 * 240.00213 * 3 2 1 5 5 H 1.48495 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46567 * 120.00426 * 3 2 1 7 7 C 1.38808 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99561 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46855 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47103 * 65.00115 * 11 10 9 13 13 N 1.46503 * 109.46777 * 305.00084 * 11 10 9 14 14 C 1.34780 * 119.99658 * 154.99996 * 13 11 10 15 15 O 1.21554 * 120.00097 * 0.02562 * 14 13 11 16 16 C 1.47923 * 119.99837 * 179.97438 * 14 13 11 17 17 C 1.38266 * 119.24240 * 179.97438 * 16 14 13 18 18 C 1.40695 * 118.65043 * 179.97438 * 17 16 14 19 19 C 1.40241 * 122.04898 * 179.97438 * 18 17 16 20 20 C 1.36315 * 119.47907 * 180.02562 * 19 18 17 21 21 C 1.39252 * 120.93946 * 0.04794 * 20 19 18 22 22 C 1.36359 * 121.06217 * 359.95227 * 21 20 19 23 23 C 1.40038 * 119.59074 * 0.02562 * 22 21 20 24 24 C 1.41348 * 121.85643 * 179.97438 * 23 22 21 25 25 O 1.35501 * 119.95572 * 0.02562 * 24 23 22 26 26 N 1.31389 * 120.09924 * 179.97438 * 24 23 22 27 27 C 1.52994 * 109.47170 * 185.00043 * 11 10 9 28 28 C 1.52990 * 117.49998 * 248.74574 * 27 11 10 29 29 C 1.53002 * 117.50049 * 180.08360 * 27 11 10 30 30 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00291 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46864 * 60.00004 * 10 9 7 33 33 H 1.08997 * 109.47088 * 299.99822 * 10 9 7 34 34 H 0.96997 * 120.00805 * 335.00183 * 13 11 10 35 35 H 1.08004 * 120.67433 * 0.28233 * 17 16 14 36 36 H 1.07997 * 120.26477 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.53150 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.46464 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.20316 * 180.02562 * 22 21 20 40 40 H 0.96705 * 113.99753 * 89.99731 * 25 24 23 41 41 H 1.09007 * 115.54772 * 34.41906 * 27 11 10 42 42 H 1.08996 * 117.49874 * 0.02562 * 28 27 11 43 43 H 1.09003 * 117.50173 * 145.02004 * 28 27 11 44 44 H 1.08998 * 117.50285 * 214.98334 * 29 27 11 45 45 H 1.08998 * 117.49458 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.4966 -4.8135 -0.9315 13 7 0.1457 -4.6763 1.1318 14 6 -1.0788 -5.2371 1.0817 15 8 -1.4212 -5.8623 0.0971 16 6 -2.0057 -5.0928 2.2255 17 6 -3.2584 -5.6741 2.1572 18 6 -4.1297 -5.5294 3.2524 19 6 -5.4158 -6.0887 3.2590 20 6 -6.2169 -5.9156 4.3482 21 6 -5.7767 -5.1909 5.4529 22 6 -4.5322 -4.6342 5.4786 23 6 -3.6813 -4.7917 4.3776 24 6 -2.3824 -4.2348 4.3530 25 8 -1.9299 -3.5258 5.4153 26 7 -1.6126 -4.4045 3.3018 27 6 1.8248 -6.1412 0.1238 28 6 1.8330 -7.0690 -1.0926 29 6 1.0023 -7.4312 0.1411 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6855 -3.7148 0.8878 33 1 2.6841 -3.7141 -0.8922 34 1 0.4190 -4.1777 1.9177 35 1 -3.5600 -6.2321 1.2831 36 1 -5.7687 -6.6521 2.4080 37 1 -7.2073 -6.3463 4.3544 38 1 -6.4314 -5.0682 6.3030 39 1 -4.2048 -4.0752 6.3428 40 1 -1.4744 -4.0606 6.0799 41 1 2.7243 -6.1095 0.7387 42 1 1.2965 -6.7379 -1.9818 43 1 2.7376 -7.6482 -1.2779 44 1 1.3608 -8.2483 0.7670 45 1 -0.0810 -7.3383 0.0642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498771137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 22.845208 kcal Electronic energy + Delta-G solvation = -29107.943396 eV Core-core repulsion = 25092.021694 eV Total energy + Delta-G solvation = -4015.921702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24704 -39.68255 -38.09999 -37.42048 -36.42508 -34.95773 -33.38285 -32.47012 -31.55670 -30.92249 -29.68351 -27.97533 -24.85707 -24.21150 -23.83739 -22.34890 -22.13724 -21.49034 -21.18807 -19.95871 -18.94937 -18.18951 -17.80471 -17.11196 -16.63789 -16.07706 -15.88319 -15.52488 -15.18784 -14.93283 -14.59348 -14.31210 -14.22982 -13.88512 -13.77378 -13.41195 -13.24404 -13.07940 -12.82607 -12.24939 -12.12635 -11.99394 -11.87686 -11.64093 -11.48587 -11.19221 -10.98824 -10.85261 -10.75229 -10.33307 -10.22951 -10.16663 -9.98966 -9.87488 -9.63408 -9.40052 -9.38107 -8.85083 -8.59987 -8.19722 -6.89730 -5.70930 -3.01020 0.00069 0.48289 1.57904 2.36619 3.21041 3.28537 3.41234 3.47806 3.51543 3.53097 3.88543 4.12185 4.34112 4.35052 4.52357 4.60932 4.64225 4.79844 4.90187 4.93298 5.06056 5.20347 5.21137 5.31118 5.44843 5.49032 5.51477 5.61324 5.66191 5.71906 5.82851 5.87802 5.95263 6.07071 6.09643 6.12283 6.22516 6.28916 6.39977 6.48605 6.52669 6.55539 6.72263 6.97347 7.28306 7.61172 7.73188 7.98000 8.46056 8.51295 9.57848 10.13870 10.49131 11.51240 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.003582 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.906407 B = 7814.959756 C =10069.174857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.149 3.851 11 C 0.166 3.834 12 H 0.089 0.911 13 N -0.682 5.682 14 C 0.573 3.427 15 O -0.541 6.541 16 C 0.090 3.910 17 C -0.098 4.098 18 C -0.022 4.022 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.081 4.081 23 C -0.108 4.108 24 C 0.354 3.646 25 O -0.469 6.469 26 N -0.475 5.475 27 C -0.162 4.162 28 C -0.170 4.170 29 C -0.186 4.186 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.415 0.585 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.402 0.598 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -17.428 11.889 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.021 3.979 11 C 0.061 3.939 12 H 0.107 0.893 13 N -0.331 5.331 14 C 0.358 3.642 15 O -0.420 6.420 16 C -0.036 4.036 17 C -0.119 4.119 18 C -0.027 4.027 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.112 4.112 24 C 0.159 3.841 25 O -0.276 6.276 26 N -0.196 5.196 27 C -0.182 4.182 28 C -0.207 4.207 29 C -0.223 4.223 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.260 0.740 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.142 -16.904 10.790 22.040 hybrid contribution -0.208 0.694 0.741 1.036 sum -9.349 -16.210 11.531 21.981 Atomic orbital electron populations 1.69666 1.05111 1.25724 1.57261 1.24747 0.95472 0.97668 1.02829 0.86267 0.78492 0.83598 0.77792 1.21299 1.21743 1.21265 1.19150 0.90954 0.84045 1.43256 0.91187 1.42332 1.05995 0.99684 1.89560 1.20914 0.92968 0.85065 0.98994 1.20889 0.90239 0.92987 0.89747 0.89260 1.45823 1.13645 1.52709 1.20938 1.17700 0.81760 0.79330 0.85381 1.90694 1.76376 1.42593 1.32368 1.20648 0.93885 0.96560 0.92495 1.22188 0.92447 0.98796 0.98486 1.18053 0.94958 0.96754 0.92895 1.21036 0.92389 0.99525 0.99220 1.21025 0.99897 0.97699 0.93208 1.20994 0.96175 0.97690 0.98715 1.20965 0.93564 0.98141 0.97424 1.19054 0.95953 0.99942 0.96267 1.19112 0.87843 0.89477 0.87638 1.84788 1.76955 1.35623 1.30258 1.66872 1.38115 1.14051 1.00566 1.22646 1.01508 0.91340 1.02711 1.22895 1.02006 1.03093 0.92754 1.23257 1.00652 0.97510 1.00857 0.93490 0.77993 0.95718 0.94597 0.74758 0.82626 0.84529 0.85284 0.85344 0.84452 0.73982 0.87808 0.88688 0.89204 0.89916 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.93 5.43 -59.90 -0.33 -19.26 16 10 C 0.15 3.04 5.80 -4.04 -0.02 3.02 16 11 C 0.17 2.96 2.43 -67.93 -0.17 2.80 16 12 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 13 N -0.68 -12.29 4.49 -54.72 -0.25 -12.53 16 14 C 0.57 10.25 7.13 -12.29 -0.09 10.17 16 15 O -0.54 -10.25 13.29 5.32 0.07 -10.18 16 16 C 0.09 1.46 6.73 -83.09 -0.56 0.90 16 17 C -0.10 -1.34 9.41 -38.64 -0.36 -1.70 16 18 C -0.02 -0.26 5.74 -106.84 -0.61 -0.88 16 19 C -0.10 -0.94 9.81 -39.52 -0.39 -1.33 16 20 C -0.10 -0.74 9.95 -39.90 -0.40 -1.14 16 21 C -0.12 -0.89 9.95 -39.88 -0.40 -1.28 16 22 C -0.08 -0.75 9.58 -39.58 -0.38 -1.13 16 23 C -0.11 -1.31 5.76 -106.67 -0.61 -1.92 16 24 C 0.35 4.88 7.80 -16.56 -0.13 4.75 16 25 O -0.47 -5.46 12.83 -18.20 -0.23 -5.69 16 26 N -0.48 -7.72 9.47 -9.60 -0.09 -7.81 16 27 C -0.16 -2.41 5.36 -90.63 -0.49 -2.89 16 28 C -0.17 -2.28 10.18 -26.70 -0.27 -2.55 16 29 C -0.19 -2.62 9.74 -26.69 -0.26 -2.88 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.39 10.77 7.34 -40.82 -0.30 10.48 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.42 7.74 7.90 -40.82 -0.32 7.42 16 35 H 0.16 1.93 7.59 -52.48 -0.40 1.53 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 1.00 7.65 -52.48 -0.40 0.60 16 40 H 0.40 2.39 9.06 45.56 0.41 2.80 16 41 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 42 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -35.12 381.22 -9.75 -44.88 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -5.00 Total: 18.80 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.38 Total: -3.55 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: 0.06 Total: -67.88 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.16 Total: -15.87 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.12 -9.75 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498771137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.724 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds