Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99766 * 2 1 4 4 H 1.48497 * 109.46956 * 240.00213 * 3 2 1 5 5 H 1.48495 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46567 * 120.00426 * 3 2 1 7 7 C 1.38808 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99561 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46855 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47103 * 65.00115 * 11 10 9 13 13 N 1.46503 * 109.46777 * 305.00084 * 11 10 9 14 14 C 1.34780 * 119.99658 * 154.99996 * 13 11 10 15 15 O 1.21554 * 120.00097 * 0.02562 * 14 13 11 16 16 C 1.47923 * 119.99837 * 179.97438 * 14 13 11 17 17 C 1.38266 * 119.24240 * 179.97438 * 16 14 13 18 18 C 1.40695 * 118.65043 * 179.97438 * 17 16 14 19 19 C 1.40241 * 122.04898 * 179.97438 * 18 17 16 20 20 C 1.36315 * 119.47907 * 180.02562 * 19 18 17 21 21 C 1.39252 * 120.93946 * 0.04794 * 20 19 18 22 22 C 1.36359 * 121.06217 * 359.95227 * 21 20 19 23 23 C 1.40038 * 119.59074 * 0.02562 * 22 21 20 24 24 C 1.41348 * 121.85643 * 179.97438 * 23 22 21 25 25 O 1.35501 * 119.95572 * 0.02562 * 24 23 22 26 26 N 1.31389 * 120.09924 * 179.97438 * 24 23 22 27 27 C 1.52994 * 109.47170 * 185.00043 * 11 10 9 28 28 C 1.52990 * 117.49998 * 248.74574 * 27 11 10 29 29 C 1.53002 * 117.50049 * 180.08360 * 27 11 10 30 30 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00291 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46864 * 60.00004 * 10 9 7 33 33 H 1.08997 * 109.47088 * 299.99822 * 10 9 7 34 34 H 0.96997 * 120.00805 * 335.00183 * 13 11 10 35 35 H 1.08004 * 120.67433 * 0.28233 * 17 16 14 36 36 H 1.07997 * 120.26477 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.53150 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.46464 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.20316 * 180.02562 * 22 21 20 40 40 H 0.96705 * 113.99753 * 89.99731 * 25 24 23 41 41 H 1.09007 * 115.54772 * 34.41906 * 27 11 10 42 42 H 1.08996 * 117.49874 * 0.02562 * 28 27 11 43 43 H 1.09003 * 117.50173 * 145.02004 * 28 27 11 44 44 H 1.08998 * 117.50285 * 214.98334 * 29 27 11 45 45 H 1.08998 * 117.49458 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.4966 -4.8135 -0.9315 13 7 0.1457 -4.6763 1.1318 14 6 -1.0788 -5.2371 1.0817 15 8 -1.4212 -5.8623 0.0971 16 6 -2.0057 -5.0928 2.2255 17 6 -3.2584 -5.6741 2.1572 18 6 -4.1297 -5.5294 3.2524 19 6 -5.4158 -6.0887 3.2590 20 6 -6.2169 -5.9156 4.3482 21 6 -5.7767 -5.1909 5.4529 22 6 -4.5322 -4.6342 5.4786 23 6 -3.6813 -4.7917 4.3776 24 6 -2.3824 -4.2348 4.3530 25 8 -1.9299 -3.5258 5.4153 26 7 -1.6126 -4.4045 3.3018 27 6 1.8248 -6.1412 0.1238 28 6 1.8330 -7.0690 -1.0926 29 6 1.0023 -7.4312 0.1411 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6855 -3.7148 0.8878 33 1 2.6841 -3.7141 -0.8922 34 1 0.4190 -4.1777 1.9177 35 1 -3.5600 -6.2321 1.2831 36 1 -5.7687 -6.6521 2.4080 37 1 -7.2073 -6.3463 4.3544 38 1 -6.4314 -5.0682 6.3030 39 1 -4.2048 -4.0752 6.3428 40 1 -1.4744 -4.0606 6.0799 41 1 2.7243 -6.1095 0.7387 42 1 1.2965 -6.7379 -1.9818 43 1 2.7376 -7.6482 -1.2779 44 1 1.3608 -8.2483 0.7670 45 1 -0.0810 -7.3383 0.0642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498771137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = -3.853040 kcal Electronic energy + Delta-G solvation = -29109.101119 eV Core-core repulsion = 25092.021694 eV Total energy + Delta-G solvation = -4017.079425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20187 -40.96352 -38.92975 -38.63841 -37.49590 -36.63404 -35.03128 -33.37457 -33.03842 -32.19288 -30.72256 -29.59315 -26.24313 -25.46389 -25.06438 -23.34506 -23.17722 -23.08096 -22.34122 -21.31340 -20.03788 -19.31483 -19.06207 -18.62249 -17.72240 -17.27458 -16.89754 -16.75110 -16.61464 -16.32804 -15.85984 -15.48097 -15.31184 -15.06906 -14.99923 -14.90367 -14.56881 -14.32190 -14.14654 -13.74209 -13.20672 -13.02199 -12.89636 -12.79632 -12.76877 -12.73866 -12.50680 -12.29928 -12.16392 -12.13518 -11.86784 -11.55910 -11.19132 -11.14126 -11.04351 -10.97075 -10.51456 -10.19766 -9.99139 -9.08606 -9.03995 -7.95003 -5.25784 -0.89914 -0.38263 0.76644 1.32925 1.45587 1.49774 1.55696 2.01360 2.25490 2.40236 2.54903 2.91491 3.00663 3.34649 3.39408 3.52719 3.56174 3.67651 3.81776 3.92243 3.99163 4.10731 4.15842 4.23545 4.26297 4.31060 4.40146 4.43571 4.61413 4.62731 4.66235 4.81372 4.86735 4.92795 5.00521 5.03023 5.08246 5.27970 5.33281 5.35207 5.37321 5.44202 5.47294 5.53631 5.83774 6.24100 6.36804 6.55625 6.75659 7.13281 7.31048 8.04020 8.28214 9.28053 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.003582 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.906407 B = 7814.959756 C =10069.174857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.176 3.824 12 H 0.064 0.936 13 N -0.686 5.686 14 C 0.570 3.430 15 O -0.562 6.562 16 C 0.053 3.947 17 C -0.091 4.091 18 C -0.041 4.041 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.093 4.093 23 C -0.118 4.118 24 C 0.348 3.652 25 O -0.478 6.478 26 N -0.512 5.512 27 C -0.169 4.169 28 C -0.157 4.157 29 C -0.183 4.183 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.410 0.590 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.423 0.577 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 -18.550 13.644 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.071 3.929 12 H 0.082 0.918 13 N -0.334 5.334 14 C 0.356 3.644 15 O -0.442 6.442 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.046 4.046 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.122 4.122 24 C 0.152 3.848 25 O -0.288 6.288 26 N -0.234 5.234 27 C -0.188 4.188 28 C -0.195 4.195 29 C -0.220 4.220 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.247 0.753 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.285 0.715 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.917 -18.074 12.555 24.138 hybrid contribution -0.107 0.957 0.327 1.017 sum -10.024 -17.117 12.882 23.652 Atomic orbital electron populations 1.69859 1.06872 1.26025 1.59333 1.25628 0.96307 1.01332 1.03509 0.85157 0.77097 0.78846 0.78307 1.20203 1.22415 1.20127 1.19621 0.91623 0.85067 1.41496 0.90116 1.42523 1.05535 1.01054 1.89547 1.21051 0.93330 0.83829 0.99433 1.20687 0.89603 0.93790 0.88810 0.91827 1.45818 1.14036 1.52931 1.20573 1.18046 0.81774 0.78711 0.85841 1.90658 1.76732 1.43525 1.33318 1.20414 0.94704 0.99365 0.92626 1.22319 0.91864 0.97790 0.99248 1.18292 0.96095 0.97765 0.92409 1.21341 0.91224 0.99519 1.00825 1.21522 1.00960 0.96183 0.92028 1.21500 0.95556 0.95361 0.99596 1.21233 0.94016 0.98895 0.97078 1.19243 0.95621 0.99923 0.97392 1.19379 0.88569 0.89341 0.87468 1.84730 1.77373 1.36418 1.30304 1.66729 1.39606 1.15581 1.01449 1.22543 1.01856 0.89925 1.04522 1.22990 1.02659 1.02054 0.91763 1.23206 0.99455 0.97508 1.01797 0.94209 0.79669 0.94557 0.93919 0.75340 0.82203 0.82590 0.81593 0.81736 0.82779 0.71483 0.86226 0.89720 0.86347 0.87767 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.53 13.06 21.65 0.28 -62.25 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.98 47.69 29.55 68.60 2.03 49.71 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.74 -39.78 5.43 -343.43 -1.87 -41.64 16 10 C 0.15 6.27 5.80 86.38 0.50 6.77 16 11 C 0.18 6.55 2.43 44.99 0.11 6.65 16 12 H 0.06 2.68 7.33 -2.39 -0.02 2.66 16 13 N -0.69 -26.35 4.49 -445.32 -2.00 -28.34 16 14 C 0.57 21.95 7.13 86.81 0.62 22.57 16 15 O -0.56 -22.81 13.29 -3.89 -0.05 -22.86 16 16 C 0.05 1.86 6.73 41.44 0.28 2.14 16 17 C -0.09 -2.62 9.41 22.88 0.22 -2.41 16 18 C -0.04 -0.98 5.74 -21.30 -0.12 -1.10 16 19 C -0.11 -1.78 9.81 22.31 0.22 -1.56 16 20 C -0.09 -0.96 9.95 22.07 0.22 -0.74 16 21 C -0.10 -1.12 9.95 22.08 0.22 -0.90 16 22 C -0.09 -1.49 9.58 22.27 0.21 -1.28 16 23 C -0.12 -2.81 5.76 -21.19 -0.12 -2.93 16 24 C 0.35 9.95 7.80 85.52 0.67 10.62 16 25 O -0.48 -11.31 12.83 -88.02 -1.13 -12.44 16 26 N -0.51 -17.79 9.47 -297.67 -2.82 -20.61 16 27 C -0.17 -4.98 5.36 -10.80 -0.06 -5.04 16 28 C -0.16 -4.07 10.18 30.62 0.31 -3.76 16 29 C -0.18 -5.11 9.74 30.62 0.30 -4.81 16 30 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.37 21.83 7.34 -92.71 -0.68 21.15 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.41 16.42 7.90 -92.71 -0.73 15.69 16 35 H 0.16 4.22 7.59 -2.91 -0.02 4.20 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.15 1.88 7.65 -2.91 -0.02 1.86 16 40 H 0.42 5.05 9.06 -74.05 -0.67 4.38 16 41 H 0.12 3.16 8.11 -2.38 -0.02 3.14 16 42 H 0.08 2.37 8.05 -2.39 -0.02 2.36 16 43 H 0.12 2.40 8.14 -2.39 -0.02 2.39 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.09 3.13 5.02 -2.39 -0.01 3.12 16 Total: -1.00 -79.43 381.22 -1.69 -81.12 By element: Atomic # 1 Polarization: 51.53 SS G_CDS: -1.02 Total: 50.51 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.88 Total: 6.80 kcal Atomic # 7 Polarization: -146.45 SS G_CDS: -6.40 Total: -152.85 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.18 Total: -35.30 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -79.43 -1.69 -81.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498771137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.268 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds