Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47282 * 300.00090 * 3 2 1 6 6 H 1.48499 * 109.46869 * 59.99648 * 3 2 1 7 7 C 1.38814 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99322 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00021 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47413 * 295.00266 * 11 10 9 13 13 N 1.46498 * 109.47002 * 54.99816 * 11 10 9 14 14 C 1.34782 * 120.00428 * 205.00016 * 13 11 10 15 15 O 1.21547 * 119.99625 * 359.97438 * 14 13 11 16 16 C 1.47925 * 120.00284 * 180.02562 * 14 13 11 17 17 C 1.38254 * 119.23971 * 179.97438 * 16 14 13 18 18 C 1.40695 * 118.65422 * 179.97438 * 17 16 14 19 19 C 1.40231 * 122.06272 * 179.97438 * 18 17 16 20 20 C 1.36310 * 119.48309 * 180.02562 * 19 18 17 21 21 C 1.39252 * 120.94655 * 359.97438 * 20 19 18 22 22 C 1.36369 * 121.05435 * 359.97438 * 21 20 19 23 23 C 1.40039 * 119.59180 * 0.27692 * 22 21 20 24 24 C 1.41344 * 121.85443 * 180.17550 * 23 22 21 25 25 O 1.35493 * 119.95164 * 359.54800 * 24 23 22 26 26 N 1.31386 * 120.10097 * 179.74767 * 24 23 22 27 27 C 1.52998 * 109.47281 * 174.99933 * 11 10 9 28 28 C 1.53001 * 117.49943 * 248.74801 * 27 11 10 29 29 C 1.53008 * 117.49986 * 180.08973 * 27 11 10 30 30 H 0.97003 * 119.99407 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99995 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47093 * 59.99809 * 10 9 7 33 33 H 1.09004 * 109.47057 * 299.99885 * 10 9 7 34 34 H 0.97000 * 120.00477 * 25.00403 * 13 11 10 35 35 H 1.08004 * 120.67583 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.26009 * 0.04729 * 19 18 17 37 37 H 1.07998 * 119.53095 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.47154 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.20032 * 179.97438 * 22 21 20 40 40 H 0.96702 * 114.00035 * 270.20587 * 25 24 23 41 41 H 1.08996 * 115.54921 * 34.41573 * 27 11 10 42 42 H 1.09007 * 117.49730 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.50152 * 145.01828 * 28 27 11 44 44 H 1.08996 * 117.49890 * 214.98086 * 29 27 11 45 45 H 1.09000 * 117.49798 * 359.97323 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.4979 -4.8134 0.9316 13 7 0.1439 -4.6763 -1.1310 14 6 -1.0806 -5.2371 -1.0791 15 8 -1.4215 -5.8622 -0.0940 16 6 -2.0093 -5.0927 -2.2215 17 6 -3.2613 -5.6748 -2.1517 18 6 -4.1349 -5.5293 -3.2449 19 6 -5.4202 -6.0902 -3.2506 20 6 -6.2229 -5.9169 -4.3385 21 6 -5.7851 -5.1908 -5.4432 22 6 -4.5417 -4.6316 -5.4695 23 6 -3.6872 -4.7933 -4.3718 24 6 -2.3905 -4.2314 -4.3467 25 8 -1.9406 -3.5206 -5.4088 26 7 -1.6193 -4.4006 -3.2965 27 6 1.8246 -6.1412 -0.1256 28 6 1.6660 -6.9263 -1.4292 29 6 1.0017 -7.4310 -0.1458 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6847 -3.7145 0.8895 33 1 2.6847 -3.7146 -0.8906 34 1 0.4160 -4.1777 -1.9173 35 1 -3.5631 -6.2294 -1.2754 36 1 -5.7714 -6.6548 -2.3995 37 1 -7.2128 -6.3489 -4.3439 38 1 -6.4408 -5.0687 -6.2926 39 1 -4.2161 -4.0715 -6.3337 40 1 -1.4855 -4.0541 -6.0748 41 1 2.7971 -6.1723 0.3655 42 1 1.0200 -6.5012 -2.1974 43 1 2.5341 -7.4743 -1.7955 44 1 1.4330 -8.3106 0.3318 45 1 -0.0817 -7.3380 -0.0690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498771141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 27.040994 kcal Electronic energy + Delta-G solvation = -29313.351485 eV Core-core repulsion = 25297.611726 eV Total energy + Delta-G solvation = -4015.739759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27298 -39.85405 -38.11155 -37.41882 -36.41797 -34.84509 -33.28703 -32.47439 -31.57758 -30.95895 -29.69246 -28.08689 -24.86254 -24.22281 -23.91029 -22.36021 -22.19969 -21.49909 -21.29331 -19.60389 -18.97256 -18.18662 -17.81266 -17.18204 -16.65411 -16.04305 -15.95454 -15.66153 -15.42339 -14.79128 -14.55662 -14.34686 -14.19882 -13.85934 -13.66679 -13.36897 -13.25914 -13.17643 -12.83520 -12.25834 -12.12115 -11.96707 -11.88812 -11.62373 -11.48878 -11.30755 -11.15822 -10.84466 -10.79229 -10.35653 -10.26680 -10.11508 -9.96872 -9.74023 -9.53051 -9.42587 -9.40120 -8.86436 -8.62342 -8.21186 -6.89727 -5.71567 -3.01419 -0.01188 0.46990 1.56869 2.34808 3.19659 3.27891 3.42491 3.46883 3.51659 3.54391 3.88355 4.08982 4.29856 4.33796 4.51022 4.59087 4.63272 4.78655 4.89211 4.95478 5.05041 5.20050 5.21930 5.24080 5.43887 5.50298 5.57755 5.60703 5.65263 5.70623 5.81500 5.88618 6.04131 6.06447 6.07040 6.09278 6.21309 6.28573 6.37089 6.47807 6.52949 6.53922 6.73616 6.95789 7.27234 7.59342 7.73910 7.94914 8.45341 8.48344 9.57476 10.13620 10.48754 11.50753 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003585 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.450676 B = 7809.438016 C = 9769.760850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.165 3.835 12 H 0.093 0.907 13 N -0.684 5.684 14 C 0.572 3.428 15 O -0.538 6.538 16 C 0.088 3.912 17 C -0.098 4.098 18 C -0.022 4.022 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.108 4.108 24 C 0.355 3.645 25 O -0.469 6.469 26 N -0.476 5.476 27 C -0.159 4.159 28 C -0.178 4.178 29 C -0.187 4.187 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.402 0.598 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 -17.390 -12.435 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.061 3.939 12 H 0.111 0.889 13 N -0.334 5.334 14 C 0.357 3.643 15 O -0.416 6.416 16 C -0.037 4.037 17 C -0.119 4.119 18 C -0.027 4.027 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.101 4.101 23 C -0.112 4.112 24 C 0.160 3.840 25 O -0.276 6.276 26 N -0.196 5.196 27 C -0.179 4.179 28 C -0.215 4.215 29 C -0.224 4.224 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.254 0.746 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.260 0.740 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.169 -16.881 -11.329 22.302 hybrid contribution -0.237 0.702 -0.709 1.026 sum -9.406 -16.178 -12.037 22.251 Atomic orbital electron populations 1.69693 1.05108 1.25470 1.57465 1.24753 0.95480 0.97685 1.02899 0.86122 0.78750 0.84197 0.77130 1.20559 1.21906 1.21926 1.19239 0.91010 0.84023 1.42928 0.91085 1.42346 1.06012 0.99711 1.89517 1.20908 0.92998 0.85071 0.98995 1.20842 0.90241 0.93050 0.89808 0.88926 1.45849 1.13643 1.52837 1.21034 1.17730 0.81742 0.79426 0.85435 1.90704 1.76292 1.42409 1.32220 1.20640 0.93963 0.96600 0.92539 1.22187 0.92424 0.98735 0.98511 1.18054 0.94939 0.96792 0.92866 1.21034 0.92391 0.99501 0.99240 1.21027 0.99892 0.97679 0.93207 1.20999 0.96215 0.97632 0.98702 1.20968 0.93530 0.98124 0.97465 1.19065 0.95955 0.99923 0.96272 1.19106 0.87876 0.89397 0.87642 1.84785 1.77035 1.35622 1.30173 1.66871 1.38060 1.14080 1.00615 1.22689 1.00801 0.92347 1.02035 1.22901 1.02977 1.03988 0.91680 1.23336 1.01494 0.96787 1.00784 0.93607 0.77996 0.94730 0.95553 0.74640 0.82625 0.84520 0.85271 0.85329 0.84445 0.73971 0.87132 0.89019 0.89496 0.89699 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.85 5.43 -59.91 -0.33 -19.17 16 10 C 0.15 3.01 5.80 -4.05 -0.02 2.99 16 11 C 0.17 2.93 2.59 -67.94 -0.18 2.76 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 13 N -0.68 -12.13 3.04 -54.73 -0.17 -12.29 16 14 C 0.57 10.11 6.63 -12.29 -0.08 10.03 16 15 O -0.54 -10.14 13.29 5.32 0.07 -10.07 16 16 C 0.09 1.42 6.73 -83.09 -0.56 0.86 16 17 C -0.10 -1.33 9.41 -38.65 -0.36 -1.69 16 18 C -0.02 -0.26 5.74 -106.84 -0.61 -0.87 16 19 C -0.10 -0.94 9.81 -39.53 -0.39 -1.32 16 20 C -0.10 -0.73 9.95 -39.90 -0.40 -1.13 16 21 C -0.12 -0.88 9.95 -39.88 -0.40 -1.28 16 22 C -0.08 -0.74 9.58 -39.58 -0.38 -1.12 16 23 C -0.11 -1.30 5.76 -106.66 -0.61 -1.91 16 24 C 0.35 4.85 7.80 -16.56 -0.13 4.72 16 25 O -0.47 -5.42 12.83 -18.17 -0.23 -5.65 16 26 N -0.48 -7.64 9.47 -9.60 -0.09 -7.73 16 27 C -0.16 -2.35 5.71 -90.62 -0.52 -2.86 16 28 C -0.18 -2.42 9.74 -26.69 -0.26 -2.68 16 29 C -0.19 -2.65 9.82 -26.69 -0.26 -2.91 16 30 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.39 10.73 7.33 -40.82 -0.30 10.43 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.42 7.68 7.90 -40.82 -0.32 7.36 16 35 H 0.16 1.92 7.59 -52.48 -0.40 1.52 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.14 1.00 7.65 -52.49 -0.40 0.59 16 40 H 0.40 2.36 9.06 45.56 0.41 2.77 16 41 H 0.11 1.49 8.11 -51.93 -0.42 1.06 16 42 H 0.09 1.32 6.67 -51.93 -0.35 0.98 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.12 1.86 5.01 -51.93 -0.26 1.60 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -35.08 378.30 -9.69 -44.76 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -4.94 Total: 18.70 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -5.41 Total: -3.86 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.14 Total: -67.44 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.16 Total: -15.72 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.08 -9.69 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498771141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.803 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds