Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47282 * 300.00090 * 3 2 1 6 6 H 1.48499 * 109.46869 * 59.99648 * 3 2 1 7 7 C 1.38814 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99322 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00021 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47413 * 295.00266 * 11 10 9 13 13 N 1.46498 * 109.47002 * 54.99816 * 11 10 9 14 14 C 1.34782 * 120.00428 * 205.00016 * 13 11 10 15 15 O 1.21547 * 119.99625 * 359.97438 * 14 13 11 16 16 C 1.47925 * 120.00284 * 180.02562 * 14 13 11 17 17 C 1.38254 * 119.23971 * 179.97438 * 16 14 13 18 18 C 1.40695 * 118.65422 * 179.97438 * 17 16 14 19 19 C 1.40231 * 122.06272 * 179.97438 * 18 17 16 20 20 C 1.36310 * 119.48309 * 180.02562 * 19 18 17 21 21 C 1.39252 * 120.94655 * 359.97438 * 20 19 18 22 22 C 1.36369 * 121.05435 * 359.97438 * 21 20 19 23 23 C 1.40039 * 119.59180 * 0.27692 * 22 21 20 24 24 C 1.41344 * 121.85443 * 180.17550 * 23 22 21 25 25 O 1.35493 * 119.95164 * 359.54800 * 24 23 22 26 26 N 1.31386 * 120.10097 * 179.74767 * 24 23 22 27 27 C 1.52998 * 109.47281 * 174.99933 * 11 10 9 28 28 C 1.53001 * 117.49943 * 248.74801 * 27 11 10 29 29 C 1.53008 * 117.49986 * 180.08973 * 27 11 10 30 30 H 0.97003 * 119.99407 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99995 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47093 * 59.99809 * 10 9 7 33 33 H 1.09004 * 109.47057 * 299.99885 * 10 9 7 34 34 H 0.97000 * 120.00477 * 25.00403 * 13 11 10 35 35 H 1.08004 * 120.67583 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.26009 * 0.04729 * 19 18 17 37 37 H 1.07998 * 119.53095 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.47154 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.20032 * 179.97438 * 22 21 20 40 40 H 0.96702 * 114.00035 * 270.20587 * 25 24 23 41 41 H 1.08996 * 115.54921 * 34.41573 * 27 11 10 42 42 H 1.09007 * 117.49730 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.50152 * 145.01828 * 28 27 11 44 44 H 1.08996 * 117.49890 * 214.98086 * 29 27 11 45 45 H 1.09000 * 117.49798 * 359.97323 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.4979 -4.8134 0.9316 13 7 0.1439 -4.6763 -1.1310 14 6 -1.0806 -5.2371 -1.0791 15 8 -1.4215 -5.8622 -0.0940 16 6 -2.0093 -5.0927 -2.2215 17 6 -3.2613 -5.6748 -2.1517 18 6 -4.1349 -5.5293 -3.2449 19 6 -5.4202 -6.0902 -3.2506 20 6 -6.2229 -5.9169 -4.3385 21 6 -5.7851 -5.1908 -5.4432 22 6 -4.5417 -4.6316 -5.4695 23 6 -3.6872 -4.7933 -4.3718 24 6 -2.3905 -4.2314 -4.3467 25 8 -1.9406 -3.5206 -5.4088 26 7 -1.6193 -4.4006 -3.2965 27 6 1.8246 -6.1412 -0.1256 28 6 1.6660 -6.9263 -1.4292 29 6 1.0017 -7.4310 -0.1458 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6847 -3.7145 0.8895 33 1 2.6847 -3.7146 -0.8906 34 1 0.4160 -4.1777 -1.9173 35 1 -3.5631 -6.2294 -1.2754 36 1 -5.7714 -6.6548 -2.3995 37 1 -7.2128 -6.3489 -4.3439 38 1 -6.4408 -5.0687 -6.2926 39 1 -4.2161 -4.0715 -6.3337 40 1 -1.4855 -4.0541 -6.0748 41 1 2.7971 -6.1723 0.3655 42 1 1.0200 -6.5012 -2.1974 43 1 2.5341 -7.4743 -1.7955 44 1 1.4330 -8.3106 0.3318 45 1 -0.0817 -7.3380 -0.0690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498771141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 0.943006 kcal Electronic energy + Delta-G solvation = -29314.483178 eV Core-core repulsion = 25297.611726 eV Total energy + Delta-G solvation = -4016.871453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23370 -41.10986 -38.93418 -38.62553 -37.49847 -36.56785 -34.85790 -33.38568 -33.06963 -32.18734 -30.73823 -29.69587 -26.23900 -25.52604 -25.06977 -23.49794 -23.18560 -23.01944 -22.44496 -20.93588 -20.04700 -19.28992 -19.10017 -18.64329 -17.69171 -17.32281 -17.09386 -16.90671 -16.53399 -16.35983 -15.75658 -15.40397 -15.26993 -15.09462 -15.00252 -14.89657 -14.61219 -14.30342 -14.16044 -13.67303 -13.16729 -13.00601 -12.93505 -12.85530 -12.79873 -12.75817 -12.68382 -12.32219 -12.16838 -12.05949 -11.85285 -11.58181 -11.19669 -11.12832 -11.01138 -10.83125 -10.53442 -10.20144 -10.00552 -9.09292 -9.03434 -7.95273 -5.25643 -0.90693 -0.38968 0.76111 1.31637 1.45841 1.47399 1.57563 2.03109 2.24933 2.40910 2.54541 2.91675 2.94358 3.30339 3.39408 3.51616 3.61121 3.67624 3.81141 3.94303 3.99245 4.06162 4.16058 4.23769 4.26090 4.36462 4.41213 4.47710 4.59436 4.61801 4.66088 4.80878 4.85271 4.92328 5.00063 5.03694 5.11089 5.23747 5.34086 5.36799 5.37139 5.43803 5.47972 5.52748 5.83303 6.24375 6.35195 6.54715 6.74667 7.11552 7.31252 8.04502 8.28344 9.28244 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003585 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.450676 B = 7809.438016 C = 9769.760850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.174 3.826 12 H 0.067 0.933 13 N -0.685 5.685 14 C 0.569 3.431 15 O -0.559 6.559 16 C 0.053 3.947 17 C -0.091 4.091 18 C -0.041 4.041 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.093 4.093 23 C -0.118 4.118 24 C 0.348 3.652 25 O -0.478 6.478 26 N -0.511 5.511 27 C -0.165 4.165 28 C -0.166 4.166 29 C -0.184 4.184 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.411 0.589 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.423 0.577 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -18.529 -14.272 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.069 3.931 12 H 0.085 0.915 13 N -0.334 5.334 14 C 0.355 3.645 15 O -0.440 6.440 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.045 4.045 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.122 4.122 24 C 0.153 3.847 25 O -0.288 6.288 26 N -0.233 5.233 27 C -0.184 4.184 28 C -0.203 4.203 29 C -0.221 4.221 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.248 0.752 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.285 0.715 41 H 0.148 0.852 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.879 -18.067 -13.177 24.447 hybrid contribution -0.157 0.970 -0.274 1.020 sum -10.036 -17.097 -13.451 23.957 Atomic orbital electron populations 1.69877 1.06869 1.25831 1.59575 1.25623 0.96311 1.01316 1.03661 0.85025 0.78360 0.79584 0.76482 1.18594 1.22221 1.22201 1.19690 0.91627 0.85034 1.41035 0.90073 1.42541 1.05563 1.01088 1.89480 1.21046 0.93339 0.83783 0.99474 1.20640 0.89663 0.93874 0.88926 0.91495 1.45812 1.13969 1.53002 1.20610 1.18061 0.81760 0.78784 0.85852 1.90668 1.76674 1.43409 1.33213 1.20407 0.94748 0.99341 0.92683 1.22317 0.91887 0.97781 0.99264 1.18291 0.96063 0.97801 0.92390 1.21338 0.91247 0.99507 1.00837 1.21522 1.00945 0.96177 0.92030 1.21505 0.95604 0.95322 0.99572 1.21237 0.93973 0.98872 0.97134 1.19250 0.95639 0.99906 0.97374 1.19373 0.88590 0.89262 0.87479 1.84727 1.77452 1.36415 1.30230 1.66730 1.39517 1.15573 1.01475 1.22621 1.01297 0.90856 1.03669 1.22933 1.03337 1.03148 0.90874 1.23295 1.00277 0.97089 1.01418 0.94255 0.79665 0.93793 0.94553 0.75237 0.82255 0.82608 0.81594 0.81731 0.82774 0.71473 0.85174 0.90346 0.86953 0.87352 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.50 13.06 21.65 0.28 -62.22 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.74 -39.53 5.43 -343.45 -1.87 -41.40 16 10 C 0.15 6.20 5.80 86.38 0.50 6.70 16 11 C 0.17 6.41 2.59 44.99 0.12 6.53 16 12 H 0.07 2.80 7.58 -2.39 -0.02 2.78 16 13 N -0.69 -25.91 3.04 -445.34 -1.35 -27.26 16 14 C 0.57 21.69 6.63 86.81 0.58 22.26 16 15 O -0.56 -22.64 13.29 -3.86 -0.05 -22.69 16 16 C 0.05 1.82 6.73 41.44 0.28 2.10 16 17 C -0.09 -2.62 9.41 22.87 0.22 -2.41 16 18 C -0.04 -0.97 5.74 -21.30 -0.12 -1.09 16 19 C -0.11 -1.78 9.81 22.30 0.22 -1.56 16 20 C -0.09 -0.95 9.95 22.06 0.22 -0.73 16 21 C -0.10 -1.12 9.95 22.08 0.22 -0.90 16 22 C -0.09 -1.48 9.58 22.27 0.21 -1.27 16 23 C -0.12 -2.79 5.76 -21.19 -0.12 -2.91 16 24 C 0.35 9.89 7.80 85.52 0.67 10.55 16 25 O -0.48 -11.22 12.83 -87.94 -1.13 -12.35 16 26 N -0.51 -17.58 9.47 -297.70 -2.82 -20.40 16 27 C -0.16 -4.82 5.71 -10.79 -0.06 -4.88 16 28 C -0.17 -4.39 9.74 30.62 0.30 -4.09 16 29 C -0.18 -5.14 9.82 30.62 0.30 -4.84 16 30 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.37 21.71 7.33 -92.71 -0.68 21.03 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 16.27 7.90 -92.71 -0.73 15.54 16 35 H 0.16 4.21 7.59 -2.91 -0.02 4.19 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.15 1.87 7.65 -2.91 -0.02 1.85 16 40 H 0.42 4.99 9.06 -74.06 -0.67 4.32 16 41 H 0.13 3.28 8.11 -2.39 -0.02 3.26 16 42 H 0.08 2.32 6.67 -2.38 -0.02 2.30 16 43 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.09 3.10 5.01 -2.39 -0.01 3.08 16 Total: -1.00 -79.22 378.30 -1.10 -80.31 By element: Atomic # 1 Polarization: 51.01 SS G_CDS: -1.01 Total: 50.00 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.83 Total: 6.28 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -5.76 Total: -151.27 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.18 Total: -35.05 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -79.22 -1.10 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498771141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.256 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds