Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99593 * 2 1 4 4 H 1.48496 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47340 * 299.99895 * 3 2 1 6 6 H 1.48500 * 109.47180 * 60.00052 * 3 2 1 7 7 C 1.38806 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99555 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46955 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46752 * 64.99730 * 11 10 9 13 13 N 1.46500 * 109.46857 * 304.99659 * 11 10 9 14 14 C 1.34777 * 119.99768 * 154.99988 * 13 11 10 15 15 O 1.21643 * 119.99826 * 359.97438 * 14 13 11 16 16 C 1.47148 * 120.00023 * 180.02562 * 14 13 11 17 17 C 1.39034 * 121.09664 * 359.97438 * 16 14 13 18 18 N 1.32076 * 121.40671 * 180.02562 * 17 16 14 19 19 C 1.31830 * 123.59689 * 0.02562 * 18 17 16 20 20 O 1.35259 * 119.61091 * 180.02562 * 19 18 17 21 21 C 1.41183 * 120.77855 * 0.02562 * 19 18 17 22 22 C 1.40128 * 122.11092 * 179.97438 * 21 19 18 23 23 C 1.36355 * 119.50668 * 179.97438 * 22 21 19 24 24 C 1.39182 * 121.05632 * 0.02562 * 23 22 21 25 25 C 1.36514 * 120.89288 * 359.97438 * 24 23 22 26 26 C 1.39620 * 119.43579 * 359.97438 * 25 24 23 27 27 C 1.53003 * 109.47006 * 185.00006 * 11 10 9 28 28 C 1.53000 * 117.49551 * 248.74472 * 27 11 10 29 29 C 1.53002 * 117.49722 * 180.08515 * 27 11 10 30 30 H 0.96997 * 120.00167 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00355 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47309 * 60.00025 * 10 9 7 33 33 H 1.09003 * 109.47400 * 299.99534 * 10 9 7 34 34 H 0.97002 * 120.00374 * 335.00847 * 13 11 10 35 35 H 1.07994 * 119.30362 * 0.05083 * 17 16 14 36 36 H 0.96695 * 113.99849 * 89.99990 * 20 19 18 37 37 H 1.08005 * 120.24630 * 0.24296 * 22 21 19 38 38 H 1.07999 * 119.47184 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.55205 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.28307 * 180.02562 * 25 24 23 41 41 H 1.09001 * 115.55028 * 34.41338 * 27 11 10 42 42 H 1.08994 * 117.50108 * 359.97438 * 28 27 11 43 43 H 1.08998 * 117.49526 * 145.02242 * 28 27 11 44 44 H 1.08994 * 117.49782 * 214.97782 * 29 27 11 45 45 H 1.09003 * 117.49567 * 359.97379 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4982 -4.8134 -0.9317 13 7 0.1442 -4.6764 1.1311 14 6 -1.0803 -5.2372 1.0792 15 8 -1.4217 -5.8621 0.0929 16 6 -2.0044 -5.0928 2.2151 17 6 -1.6381 -4.3832 3.3532 18 7 -2.4625 -4.2502 4.3764 19 6 -3.6752 -4.7662 4.4080 20 8 -4.4528 -4.5794 5.4989 21 6 -4.1718 -5.5116 3.3167 22 6 -5.4558 -6.0728 3.3207 23 6 -5.8818 -6.7827 2.2373 24 6 -5.0615 -6.9596 1.1270 25 6 -3.8055 -6.4259 1.0913 26 6 -3.3402 -5.6927 2.1846 27 6 1.8249 -6.1411 0.1256 28 6 1.8349 -7.0690 -1.0909 29 6 1.0024 -7.4312 0.1416 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8895 34 1 0.4162 -4.1777 1.9173 35 1 -0.6587 -3.9308 3.4015 36 1 -5.0030 -3.7852 5.4583 37 1 -6.1048 -5.9404 4.1739 38 1 -6.8714 -7.2154 2.2412 39 1 -5.4238 -7.5260 0.2818 40 1 -3.1774 -6.5689 0.2244 41 1 2.7235 -6.1095 0.7418 42 1 1.2991 -6.7383 -1.9805 43 1 2.7398 -7.6481 -1.2747 44 1 1.3600 -8.2483 0.7681 45 1 -0.0808 -7.3383 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498828569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = 26.988923 kcal Electronic energy + Delta-G solvation = -29399.003790 eV Core-core repulsion = 25383.261773 eV Total energy + Delta-G solvation = -4015.742017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16716 -39.70047 -38.12302 -37.29527 -36.72072 -35.06101 -33.52582 -32.17445 -31.32439 -31.24087 -29.65040 -27.83836 -24.85696 -24.03249 -23.74629 -22.81967 -22.13780 -21.52907 -20.93909 -20.15452 -19.16814 -17.91549 -17.78115 -17.35360 -16.93728 -16.12359 -15.82944 -15.32065 -15.14237 -14.98421 -14.78543 -14.36547 -14.29332 -13.90913 -13.49365 -13.33137 -13.22255 -13.07767 -12.87014 -12.22213 -12.17351 -12.09845 -12.08372 -11.72945 -11.56423 -11.24452 -11.07109 -10.92624 -10.84925 -10.18155 -10.15417 -10.01376 -9.97310 -9.86434 -9.71160 -9.31713 -9.28391 -8.95440 -8.75529 -8.13229 -7.00083 -5.81270 -3.11512 -0.11242 0.72956 1.52585 2.60907 3.20592 3.22464 3.30406 3.40746 3.46582 3.48718 3.92708 4.08270 4.33195 4.44110 4.52941 4.56090 4.70162 4.85988 4.88298 4.97602 5.08812 5.14924 5.23746 5.28997 5.37303 5.48755 5.51677 5.54774 5.75236 5.79442 5.83193 5.86170 5.94417 6.06433 6.14578 6.19382 6.29662 6.31036 6.34715 6.45215 6.49704 6.62119 6.72025 6.87888 7.18073 7.66083 7.69571 7.74213 8.35997 8.39222 9.48391 10.03071 10.38392 11.40946 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.003653 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.135347 B = 7663.654317 C = 9591.532787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.169 3.831 12 H 0.091 0.909 13 N -0.698 5.698 14 C 0.574 3.426 15 O -0.540 6.540 16 C -0.180 4.180 17 C 0.154 3.846 18 N -0.513 5.513 19 C 0.379 3.621 20 O -0.477 6.477 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.097 4.097 25 C -0.109 4.109 26 C 0.025 3.975 27 C -0.164 4.164 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.403 0.597 35 H 0.166 0.834 36 H 0.407 0.593 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.169 0.831 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -15.927 6.136 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.065 3.935 12 H 0.109 0.891 13 N -0.347 5.347 14 C 0.362 3.638 15 O -0.420 6.420 16 C -0.185 4.185 17 C 0.008 3.992 18 N -0.231 5.231 19 C 0.186 3.814 20 O -0.285 6.285 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.116 4.116 25 C -0.126 4.126 26 C 0.020 3.980 27 C -0.183 4.183 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.240 0.760 35 H 0.183 0.817 36 H 0.267 0.733 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.186 0.814 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.715 -16.237 6.305 19.477 hybrid contribution -0.166 1.310 -0.272 1.349 sum -8.881 -14.927 6.032 18.386 Atomic orbital electron populations 1.69674 1.05118 1.25617 1.57418 1.24742 0.95487 0.97711 1.02738 0.86129 0.78807 0.84099 0.77196 1.20522 1.21864 1.21846 1.19248 0.91074 0.83977 1.43102 0.91029 1.42360 1.05981 0.99738 1.89639 1.20935 0.92990 0.85000 0.99141 1.20866 0.90058 0.92958 0.89639 0.89096 1.45886 1.14135 1.53712 1.20974 1.17560 0.81395 0.78926 0.85938 1.90540 1.75772 1.42372 1.33325 1.21890 0.95361 1.04049 0.97177 1.22556 0.97923 0.92246 0.86436 1.66591 1.04735 1.22697 1.29109 1.19416 0.87590 0.90306 0.84055 1.84593 1.56764 1.48944 1.38228 1.18895 0.96537 1.03719 0.94233 1.20870 0.94024 0.96601 0.98827 1.20980 1.00220 0.99215 0.93656 1.21198 0.93970 0.98340 0.98085 1.21844 0.96508 0.95272 0.99010 1.18784 0.91123 0.94745 0.93339 1.22651 1.01541 0.91349 1.02808 1.22895 1.02027 1.03061 0.92747 1.23267 1.00652 0.97446 1.00836 0.93524 0.78028 0.95624 0.94513 0.76043 0.81725 0.73308 0.84658 0.85517 0.85321 0.81355 0.87804 0.88695 0.89211 0.89909 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.65 5.43 -59.91 -0.33 -17.97 16 10 C 0.15 2.78 5.80 -4.04 -0.02 2.75 16 11 C 0.17 2.74 2.43 -67.92 -0.17 2.57 16 12 H 0.09 1.66 7.33 -51.93 -0.38 1.28 16 13 N -0.70 -10.88 4.45 -54.96 -0.24 -11.12 16 14 C 0.57 9.22 7.09 -12.64 -0.09 9.13 16 15 O -0.54 -9.31 10.74 5.24 0.06 -9.25 16 16 C -0.18 -2.71 6.06 -102.68 -0.62 -3.33 16 17 C 0.15 2.23 10.70 -17.15 -0.18 2.05 16 18 N -0.51 -7.56 10.25 -12.66 -0.13 -7.69 16 19 C 0.38 4.90 7.79 -16.44 -0.13 4.77 16 20 O -0.48 -4.79 12.80 -17.47 -0.22 -5.01 16 21 C -0.13 -1.65 5.75 -106.78 -0.61 -2.27 16 22 C -0.08 -0.83 9.58 -39.55 -0.38 -1.21 16 23 C -0.12 -1.12 9.95 -39.91 -0.40 -1.52 16 24 C -0.10 -1.00 9.96 -39.85 -0.40 -1.40 16 25 C -0.11 -1.44 9.32 -39.69 -0.37 -1.81 16 26 C 0.03 0.36 5.90 -104.78 -0.62 -0.26 16 27 C -0.16 -2.24 5.36 -90.62 -0.49 -2.72 16 28 C -0.17 -2.14 10.18 -26.69 -0.27 -2.41 16 29 C -0.19 -2.46 9.74 -26.69 -0.26 -2.72 16 30 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 9.95 7.33 -40.82 -0.30 9.65 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.40 6.00 6.69 -40.82 -0.27 5.73 16 35 H 0.17 2.15 6.42 -52.49 -0.34 1.81 16 36 H 0.41 2.08 9.06 45.56 0.41 2.49 16 37 H 0.14 1.00 7.66 -52.48 -0.40 0.60 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.17 2.43 5.23 -52.48 -0.27 2.15 16 41 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.12 1.77 5.02 -51.93 -0.26 1.51 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -33.08 374.44 -9.51 -42.59 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -4.74 Total: 18.19 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -5.25 Total: -5.49 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.02 Total: -63.70 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.17 Total: -14.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.08 -9.51 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498828569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.581 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds