Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99593 * 2 1 4 4 H 1.48496 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47340 * 299.99895 * 3 2 1 6 6 H 1.48500 * 109.47180 * 60.00052 * 3 2 1 7 7 C 1.38806 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99555 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46955 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46752 * 64.99730 * 11 10 9 13 13 N 1.46500 * 109.46857 * 304.99659 * 11 10 9 14 14 C 1.34777 * 119.99768 * 154.99988 * 13 11 10 15 15 O 1.21643 * 119.99826 * 359.97438 * 14 13 11 16 16 C 1.47148 * 120.00023 * 180.02562 * 14 13 11 17 17 C 1.39034 * 121.09664 * 359.97438 * 16 14 13 18 18 N 1.32076 * 121.40671 * 180.02562 * 17 16 14 19 19 C 1.31830 * 123.59689 * 0.02562 * 18 17 16 20 20 O 1.35259 * 119.61091 * 180.02562 * 19 18 17 21 21 C 1.41183 * 120.77855 * 0.02562 * 19 18 17 22 22 C 1.40128 * 122.11092 * 179.97438 * 21 19 18 23 23 C 1.36355 * 119.50668 * 179.97438 * 22 21 19 24 24 C 1.39182 * 121.05632 * 0.02562 * 23 22 21 25 25 C 1.36514 * 120.89288 * 359.97438 * 24 23 22 26 26 C 1.39620 * 119.43579 * 359.97438 * 25 24 23 27 27 C 1.53003 * 109.47006 * 185.00006 * 11 10 9 28 28 C 1.53000 * 117.49551 * 248.74472 * 27 11 10 29 29 C 1.53002 * 117.49722 * 180.08515 * 27 11 10 30 30 H 0.96997 * 120.00167 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00355 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47309 * 60.00025 * 10 9 7 33 33 H 1.09003 * 109.47400 * 299.99534 * 10 9 7 34 34 H 0.97002 * 120.00374 * 335.00847 * 13 11 10 35 35 H 1.07994 * 119.30362 * 0.05083 * 17 16 14 36 36 H 0.96695 * 113.99849 * 89.99990 * 20 19 18 37 37 H 1.08005 * 120.24630 * 0.24296 * 22 21 19 38 38 H 1.07999 * 119.47184 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.55205 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.28307 * 180.02562 * 25 24 23 41 41 H 1.09001 * 115.55028 * 34.41338 * 27 11 10 42 42 H 1.08994 * 117.50108 * 359.97438 * 28 27 11 43 43 H 1.08998 * 117.49526 * 145.02242 * 28 27 11 44 44 H 1.08994 * 117.49782 * 214.97782 * 29 27 11 45 45 H 1.09003 * 117.49567 * 359.97379 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4982 -4.8134 -0.9317 13 7 0.1442 -4.6764 1.1311 14 6 -1.0803 -5.2372 1.0792 15 8 -1.4217 -5.8621 0.0929 16 6 -2.0044 -5.0928 2.2151 17 6 -1.6381 -4.3832 3.3532 18 7 -2.4625 -4.2502 4.3764 19 6 -3.6752 -4.7662 4.4080 20 8 -4.4528 -4.5794 5.4989 21 6 -4.1718 -5.5116 3.3167 22 6 -5.4558 -6.0728 3.3207 23 6 -5.8818 -6.7827 2.2373 24 6 -5.0615 -6.9596 1.1270 25 6 -3.8055 -6.4259 1.0913 26 6 -3.3402 -5.6927 2.1846 27 6 1.8249 -6.1411 0.1256 28 6 1.8349 -7.0690 -1.0909 29 6 1.0024 -7.4312 0.1416 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8895 34 1 0.4162 -4.1777 1.9173 35 1 -0.6587 -3.9308 3.4015 36 1 -5.0030 -3.7852 5.4583 37 1 -6.1048 -5.9404 4.1739 38 1 -6.8714 -7.2154 2.2412 39 1 -5.4238 -7.5260 0.2818 40 1 -3.1774 -6.5689 0.2244 41 1 2.7235 -6.1095 0.7418 42 1 1.2991 -6.7383 -1.9805 43 1 2.7398 -7.6481 -1.2747 44 1 1.3600 -8.2483 0.7681 45 1 -0.0808 -7.3383 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498828569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 2.508611 kcal Electronic energy + Delta-G solvation = -29400.065336 eV Core-core repulsion = 25383.261773 eV Total energy + Delta-G solvation = -4016.803563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16694 -40.88344 -39.02096 -38.42207 -37.73036 -36.62458 -35.06551 -33.29277 -32.88590 -32.23357 -30.83225 -29.31071 -26.14917 -25.60796 -24.70356 -23.86639 -23.19675 -23.04339 -22.04954 -21.38204 -20.10966 -19.32908 -18.86741 -18.65197 -18.14145 -17.28339 -16.82013 -16.67592 -16.60006 -16.03667 -15.88074 -15.73455 -15.36827 -15.17658 -15.00593 -14.67942 -14.51409 -14.22344 -14.07009 -13.66186 -13.20226 -13.15819 -13.02694 -12.91761 -12.83424 -12.71497 -12.48375 -12.45915 -12.23759 -12.03935 -11.85052 -11.25125 -11.10807 -11.00225 -10.98538 -10.90159 -10.42712 -10.19002 -10.02025 -9.10237 -9.01985 -7.94693 -5.24388 -1.09134 -0.20965 0.60578 1.48352 1.48634 1.57465 1.58667 2.01108 2.16618 2.38708 2.55594 2.94176 3.00816 3.32324 3.40172 3.47633 3.57850 3.62107 3.80693 3.91512 3.98384 4.10282 4.13329 4.17607 4.27335 4.32608 4.39518 4.45784 4.54040 4.63606 4.64367 4.83175 4.88267 4.94531 5.05194 5.08043 5.12457 5.27283 5.30397 5.35328 5.43221 5.48499 5.51244 5.58000 5.86304 6.25732 6.45071 6.48910 6.71276 7.15635 7.33487 8.06016 8.29954 9.28459 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.003653 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.135347 B = 7663.654317 C = 9591.532787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.149 3.851 11 C 0.180 3.820 12 H 0.065 0.935 13 N -0.697 5.697 14 C 0.572 3.428 15 O -0.557 6.557 16 C -0.205 4.205 17 C 0.152 3.848 18 N -0.542 5.542 19 C 0.391 3.609 20 O -0.474 6.474 21 C -0.146 4.146 22 C -0.075 4.075 23 C -0.118 4.118 24 C -0.082 4.082 25 C -0.142 4.142 26 C 0.007 3.993 27 C -0.167 4.167 28 C -0.160 4.160 29 C -0.183 4.183 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.406 0.594 35 H 0.169 0.831 36 H 0.430 0.570 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -17.185 7.127 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.076 3.924 12 H 0.083 0.917 13 N -0.347 5.347 14 C 0.361 3.639 15 O -0.439 6.439 16 C -0.210 4.210 17 C 0.007 3.993 18 N -0.262 5.262 19 C 0.199 3.801 20 O -0.286 6.286 21 C -0.150 4.150 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.101 4.101 25 C -0.159 4.159 26 C 0.002 3.998 27 C -0.186 4.186 28 C -0.198 4.198 29 C -0.220 4.220 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.242 0.758 35 H 0.186 0.814 36 H 0.294 0.706 37 H 0.185 0.815 38 H 0.185 0.815 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.390 -17.514 7.304 21.172 hybrid contribution -0.087 1.596 -0.551 1.690 sum -9.477 -15.918 6.753 19.718 Atomic orbital electron populations 1.69837 1.06670 1.25853 1.59543 1.25522 0.96248 1.00995 1.03672 0.85106 0.78399 0.79984 0.76449 1.18819 1.22458 1.22170 1.19662 0.91612 0.85028 1.41021 0.90206 1.42529 1.05633 1.00940 1.89529 1.21061 0.93328 0.83734 0.99609 1.20620 0.89434 0.93504 0.88874 0.91707 1.45846 1.14185 1.53874 1.20787 1.17773 0.81456 0.78527 0.86138 1.90532 1.76095 1.43179 1.34100 1.21835 0.96144 1.05931 0.97091 1.22603 0.98203 0.92023 0.86450 1.66627 1.05838 1.24317 1.29441 1.19597 0.87259 0.88955 0.84321 1.84542 1.56663 1.50428 1.36950 1.19094 0.97714 1.04499 0.93655 1.21286 0.92888 0.95217 1.00061 1.21423 1.01495 0.98233 0.92407 1.21577 0.92622 0.96563 0.99310 1.21745 0.98039 0.97530 0.98627 1.18995 0.91112 0.95222 0.94479 1.22566 1.01838 0.90001 1.04215 1.22978 1.02596 1.02298 0.91880 1.23201 0.99519 0.97593 1.01713 0.94194 0.79420 0.94092 0.94210 0.75788 0.81426 0.70614 0.81545 0.81513 0.82766 0.83434 0.86148 0.89730 0.86671 0.88138 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -36.55 5.43 -343.44 -1.87 -38.41 16 10 C 0.15 5.65 5.80 86.38 0.50 6.15 16 11 C 0.18 6.01 2.43 45.00 0.11 6.12 16 12 H 0.06 2.50 7.33 -2.39 -0.02 2.48 16 13 N -0.70 -22.92 4.45 -446.04 -1.99 -24.91 16 14 C 0.57 19.69 7.09 86.58 0.61 20.30 16 15 O -0.56 -20.70 10.74 -4.17 -0.04 -20.75 16 16 C -0.20 -6.57 6.06 -18.60 -0.11 -6.68 16 17 C 0.15 4.66 10.70 84.85 0.91 5.57 16 18 N -0.54 -16.29 10.25 -307.28 -3.15 -19.44 16 19 C 0.39 9.85 7.79 85.42 0.67 10.51 16 20 O -0.47 -8.54 12.80 -85.43 -1.09 -9.64 16 21 C -0.15 -3.59 5.75 -21.26 -0.12 -3.71 16 22 C -0.08 -1.27 9.58 22.29 0.21 -1.06 16 23 C -0.12 -1.74 9.95 22.06 0.22 -1.53 16 24 C -0.08 -1.56 9.96 22.09 0.22 -1.34 16 25 C -0.14 -3.86 9.32 22.20 0.21 -3.65 16 26 C 0.01 0.20 5.90 -19.96 -0.12 0.09 16 27 C -0.17 -4.47 5.36 -10.79 -0.06 -4.53 16 28 C -0.16 -3.89 10.18 30.62 0.31 -3.58 16 29 C -0.18 -4.81 9.74 30.62 0.30 -4.51 16 30 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.37 20.06 7.33 -92.71 -0.68 19.38 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 12.76 6.69 -92.71 -0.62 12.14 16 35 H 0.17 4.73 6.42 -2.91 -0.02 4.71 16 36 H 0.43 3.34 9.06 -74.06 -0.67 2.67 16 37 H 0.17 1.74 7.66 -2.91 -0.02 1.71 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.15 4.60 5.23 -2.91 -0.02 4.58 16 41 H 0.12 2.86 8.11 -2.39 -0.02 2.84 16 42 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 43 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 3.00 5.02 -2.39 -0.01 2.99 16 Total: -1.00 -73.39 374.44 -1.56 -74.95 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -0.89 Total: 46.96 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.16 Total: 2.27 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -6.72 Total: -141.56 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.14 Total: -30.38 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.39 -1.56 -74.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498828569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.462 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds