Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00080 * 2 1 4 4 H 1.48502 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46983 * 300.00607 * 3 2 1 6 6 H 1.48497 * 109.47019 * 60.00265 * 3 2 1 7 7 C 1.38813 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99787 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00162 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46885 * 35.00681 * 10 9 7 12 12 C 1.52993 * 109.47839 * 275.00206 * 10 9 7 13 13 O 1.42898 * 109.47125 * 295.00203 * 12 10 9 14 14 C 1.53002 * 109.46914 * 154.99945 * 10 9 7 15 15 N 1.46504 * 109.47287 * 305.00398 * 14 10 9 16 16 C 1.34776 * 119.99714 * 179.97438 * 15 14 10 17 17 O 1.21570 * 120.00318 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99744 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 0.97006 * 119.99794 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99937 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47093 * 55.00259 * 12 10 9 33 33 H 1.09003 * 109.47273 * 174.99630 * 12 10 9 34 34 H 0.96704 * 113.99890 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47239 * 185.00509 * 14 10 9 36 36 H 1.09003 * 109.46937 * 65.00688 * 14 10 9 37 37 H 0.96992 * 120.00064 * 0.02562 * 15 14 10 38 38 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 42 42 H 1.08009 * 119.86648 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.93269 * 179.97438 * 26 25 24 44 44 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 45 45 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9692 -3.5507 0.5873 12 6 2.4210 -4.0350 -1.4390 13 8 1.2262 -4.2877 -2.1812 14 6 1.1813 -4.7523 0.6082 15 7 0.7356 -4.3362 1.9403 16 6 -0.0537 -5.1484 2.6710 17 8 -0.3954 -6.2264 2.2249 18 6 -0.5035 -4.7286 4.0138 19 6 -1.3242 -5.5659 4.7824 20 6 -1.7198 -5.1307 6.0313 21 6 -1.2927 -3.8821 6.4840 22 6 -1.7132 -3.4066 7.8235 23 6 -1.2936 -2.1605 8.2873 24 6 -1.6887 -1.7230 9.5350 25 6 -2.4990 -2.5184 10.3253 26 6 -2.9184 -3.7556 9.8705 27 6 -2.5298 -4.2038 8.6246 28 7 -0.5192 -3.1117 5.7283 29 6 -0.1169 -3.4924 4.5354 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.9703 -3.2157 -1.9027 33 1 3.0416 -4.9311 -1.4333 34 1 1.3808 -4.5341 -3.1034 35 1 1.7563 -5.6748 0.6891 36 1 0.3133 -4.9200 -0.0295 37 1 1.0080 -3.4760 2.2961 38 1 -1.6400 -6.5278 4.4062 39 1 -2.3516 -5.7497 6.6509 40 1 -0.6614 -1.5386 7.6710 41 1 -1.3607 -0.7598 9.8972 42 1 -2.8054 -2.1719 11.3014 43 1 -3.5506 -4.3724 10.4921 44 1 -2.8582 -5.1698 8.2703 45 1 0.5158 -2.8403 3.9516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676592259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -33.207049 kcal Electronic energy + Delta-G solvation = -28107.143194 eV Core-core repulsion = 24088.790884 eV Total energy + Delta-G solvation = -4018.352310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79838 -40.51097 -39.44280 -38.57168 -36.42442 -35.30189 -34.11544 -33.65928 -33.07301 -31.78650 -30.82646 -29.83056 -26.99880 -25.73620 -25.34492 -24.89817 -23.04287 -22.56397 -21.67835 -21.44329 -19.57642 -19.03114 -18.26244 -18.16862 -17.84135 -17.04660 -16.93794 -16.49486 -16.29494 -15.95334 -15.52238 -15.46209 -15.36439 -15.15103 -15.06421 -14.84007 -14.45985 -14.34183 -14.31381 -14.05318 -13.71473 -13.53007 -13.38107 -13.05786 -12.77270 -12.66538 -12.23195 -12.19025 -11.99704 -11.87663 -11.74042 -11.33657 -11.11846 -10.98294 -10.80305 -10.71508 -10.55400 -10.09876 -9.86479 -9.28619 -9.00939 -7.90345 -5.19477 -0.81812 0.13339 0.49635 0.55140 1.49198 1.50153 1.59070 1.79034 2.12885 2.57411 2.64425 2.94384 3.06744 3.42380 3.48886 3.61447 3.65619 3.75302 3.87696 3.89771 4.00060 4.04770 4.13753 4.18547 4.31611 4.43691 4.50505 4.56325 4.59714 4.61672 4.64920 4.80475 4.87241 4.98750 5.00195 5.02852 5.17015 5.22331 5.37220 5.42308 5.55758 5.56022 5.59003 5.62215 6.04894 6.28264 6.45666 6.73990 7.06503 7.09700 7.36805 8.08808 8.33916 9.32419 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.002750 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.721498 B =10180.020995 C =12489.679383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.159 3.841 11 H 0.081 0.919 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.560 3.440 17 O -0.576 6.576 18 C -0.201 4.201 19 C -0.015 4.015 20 C -0.162 4.162 21 C 0.178 3.822 22 C -0.080 4.080 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.105 4.105 26 C -0.125 4.125 27 C -0.098 4.098 28 N -0.502 5.502 29 C 0.142 3.858 30 H 0.247 0.753 31 H 0.372 0.628 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -11.511 18.315 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.229 1.229 6 H -0.225 1.225 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.348 3.652 17 O -0.458 6.458 18 C -0.206 4.206 19 C -0.041 4.041 20 C -0.181 4.181 21 C 0.043 3.957 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.116 4.116 28 N -0.211 5.211 29 C -0.017 4.017 30 H 0.056 0.944 31 H 0.204 0.796 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.199 0.801 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.099 -11.180 18.847 22.014 hybrid contribution 0.298 0.904 -1.487 1.766 sum -1.801 -10.275 17.360 20.253 Atomic orbital electron populations 1.69849 1.06636 1.25617 1.59493 1.25465 0.96102 1.00772 1.03995 0.85184 0.78516 0.80502 0.76183 1.18694 1.22942 1.22514 1.19635 0.91495 0.84740 1.40663 0.89965 1.42495 1.05366 1.00234 1.88173 1.20880 0.95144 0.85264 0.93681 0.90100 1.22865 0.86530 0.98673 0.93513 1.86523 1.32878 1.92075 1.27621 1.21467 0.98713 0.97401 0.81966 1.45922 1.50111 1.21551 1.17891 1.18227 0.78145 0.83909 0.84934 1.90714 1.58401 1.23642 1.73041 1.20998 1.05093 0.98325 0.96227 1.21855 0.90717 0.99185 0.92328 1.22351 1.02306 0.96831 0.96659 1.20442 0.91222 0.90683 0.93380 1.18682 1.01290 0.96302 0.91760 1.21455 0.98521 0.95240 0.96497 1.21423 0.98856 1.01159 0.93864 1.21709 0.95889 0.94215 1.00509 1.21477 1.00324 0.96793 0.95710 1.21566 0.95793 1.00006 0.94254 1.67647 1.12528 1.34906 1.06015 1.23025 0.94850 0.92709 0.91132 0.94382 0.79620 0.94467 0.91500 0.76655 0.89863 0.92754 0.75369 0.82154 0.80120 0.86369 0.84220 0.83089 0.82510 0.83078 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -34.01 4.51 -322.95 -1.46 -35.46 16 10 C 0.16 5.78 2.84 44.99 0.13 5.91 16 11 H 0.08 2.71 8.08 -2.38 -0.02 2.69 16 12 C 0.06 2.09 6.86 71.98 0.49 2.58 16 13 O -0.58 -20.00 12.64 -148.98 -1.88 -21.88 16 14 C 0.13 4.47 5.12 86.38 0.44 4.92 16 15 N -0.70 -24.42 5.34 -466.09 -2.49 -26.91 16 16 C 0.56 19.68 7.77 86.75 0.67 20.36 16 17 O -0.58 -22.84 16.41 -3.94 -0.06 -22.90 16 18 C -0.20 -6.17 5.89 -19.96 -0.12 -6.29 16 19 C -0.01 -0.38 9.70 22.70 0.22 -0.16 16 20 C -0.16 -3.43 9.44 22.53 0.21 -3.22 16 21 C 0.18 4.61 6.73 41.97 0.28 4.89 16 22 C -0.08 -1.77 5.88 -20.05 -0.12 -1.89 16 23 C -0.10 -2.25 9.57 22.50 0.22 -2.03 16 24 C -0.14 -2.33 10.03 22.24 0.22 -2.10 16 25 C -0.11 -1.37 10.04 22.32 0.22 -1.14 16 26 C -0.13 -1.53 10.03 22.23 0.22 -1.31 16 27 C -0.10 -1.51 9.42 22.50 0.21 -1.30 16 28 N -0.50 -15.51 9.40 -183.83 -1.73 -17.24 16 29 C 0.14 4.43 10.70 85.08 0.91 5.34 16 30 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 31 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.39 9.19 9.12 -74.05 -0.68 8.52 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 36 H 0.05 2.18 7.39 -2.39 -0.02 2.16 16 37 H 0.41 14.24 6.19 -92.71 -0.57 13.67 16 38 H 0.16 3.60 7.73 -2.91 -0.02 3.58 16 39 H 0.18 2.25 6.17 -2.91 -0.02 2.24 16 40 H 0.12 3.05 7.53 -2.91 -0.02 3.03 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 44 H 0.15 1.49 6.17 -2.91 -0.02 1.47 16 45 H 0.16 4.98 6.41 -2.91 -0.02 4.96 16 Total: -1.00 -73.61 385.01 -0.69 -74.30 By element: Atomic # 1 Polarization: 51.98 SS G_CDS: -0.91 Total: 51.07 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.53 Total: 9.91 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.39 Total: -137.51 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.95 Total: -44.78 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.61 -0.69 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.096 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds