Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46936 * 299.99892 * 3 2 1 6 6 H 1.48499 * 109.47107 * 59.99987 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.46509 * 120.00058 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.46614 * 325.00137 * 10 9 7 12 12 C 1.52993 * 109.46999 * 85.00400 * 10 9 7 13 13 O 1.42898 * 109.47318 * 64.99859 * 12 10 9 14 14 C 1.53002 * 109.47018 * 205.00433 * 10 9 7 15 15 N 1.46504 * 109.47287 * 54.99868 * 14 10 9 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 10 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 0.97002 * 120.00083 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47150 * 185.00125 * 12 10 9 33 33 H 1.09009 * 109.47151 * 305.00438 * 12 10 9 34 34 H 0.96701 * 114.00546 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46793 * 295.00133 * 14 10 9 36 36 H 1.08999 * 109.46495 * 175.00012 * 14 10 9 37 37 H 0.97001 * 119.99756 * 0.02562 * 15 14 10 38 38 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 42 42 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 45 45 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 1 2.9687 -3.5505 -0.5899 12 6 2.4219 -4.0357 1.4364 13 8 1.2276 -4.2886 2.1793 14 6 1.1809 -4.7522 -0.6103 15 7 0.7343 -4.3354 -1.9419 16 6 -0.0546 -5.1476 -2.6728 17 8 -0.3961 -6.2258 -2.2270 18 6 -0.5044 -4.7277 -4.0156 19 6 -1.3256 -5.5646 -4.7840 20 6 -1.7203 -5.1298 -6.0333 21 6 -1.2927 -3.8814 -6.4862 22 6 -1.7112 -3.4068 -7.8266 23 6 -1.2902 -2.1614 -8.2910 24 6 -1.6827 -1.7252 -9.5400 25 6 -2.4926 -2.5206 -10.3306 26 6 -2.9134 -3.7572 -9.8751 27 6 -2.5274 -4.2041 -8.6280 28 7 -0.5110 -3.1154 -5.7345 29 6 -0.1177 -3.4915 -4.5371 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0423 -4.9317 1.4300 33 1 2.9715 -3.2164 1.9002 34 1 1.3826 -4.5346 3.1015 35 1 0.3133 -4.9200 0.0278 36 1 1.7559 -5.6746 -0.6920 37 1 1.0071 -3.4753 -2.2978 38 1 -1.6412 -6.5267 -4.4081 39 1 -2.3532 -5.7481 -6.6524 40 1 -0.6576 -1.5397 -7.6749 41 1 -1.3608 -0.7587 -9.8990 42 1 -2.7969 -2.1751 -11.3076 43 1 -3.5453 -4.3740 -10.4969 44 1 -2.8563 -5.1699 -8.2736 45 1 0.5142 -2.8391 -3.9529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676592265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -9.286458 kcal Electronic energy + Delta-G solvation = -28105.503917 eV Core-core repulsion = 24088.188882 eV Total energy + Delta-G solvation = -4017.315036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72218 -39.40072 -38.48918 -37.10928 -34.95688 -33.65104 -33.07302 -32.62384 -31.41806 -31.08157 -29.72637 -28.25224 -25.75798 -24.40215 -24.00550 -23.56520 -22.22233 -21.70054 -20.31692 -20.07494 -18.18490 -17.63442 -17.16159 -16.73163 -16.59410 -16.27284 -15.50042 -15.13704 -14.94004 -14.70956 -14.53148 -14.46646 -14.13703 -13.99765 -13.61515 -13.48486 -13.39756 -13.17740 -12.98352 -12.86294 -12.72600 -12.43072 -12.00396 -11.50862 -11.45332 -11.30477 -10.91225 -10.87165 -10.60493 -10.10117 -10.07887 -10.02980 -9.86408 -9.80605 -9.44481 -9.37132 -9.17715 -9.00866 -8.71447 -8.39096 -7.06487 -5.83373 -3.14298 0.16026 1.15435 1.18490 1.40574 2.99157 3.38111 3.42965 3.44541 3.46816 3.57525 3.89529 3.99559 4.39724 4.51054 4.70683 4.73126 4.74543 4.81378 4.89352 4.90671 5.00253 5.14486 5.26051 5.36684 5.37970 5.44552 5.50511 5.53907 5.66826 5.77076 5.85716 5.92259 5.99011 6.01045 6.02238 6.17474 6.26328 6.32681 6.34415 6.47591 6.48811 6.70607 6.72006 6.81915 7.61365 7.76596 7.84490 8.18517 8.33115 8.45515 9.45783 10.00152 10.36642 11.37956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002749 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.183636 B =10183.257621 C =12491.824215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.704 5.704 16 C 0.559 3.441 17 O -0.548 6.548 18 C -0.183 4.183 19 C -0.015 4.015 20 C -0.175 4.175 21 C 0.183 3.817 22 C -0.052 4.052 23 C -0.075 4.075 24 C -0.127 4.127 25 C -0.110 4.110 26 C -0.127 4.127 27 C -0.099 4.099 28 N -0.478 5.478 29 C 0.150 3.850 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.364 0.636 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.409 0.591 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -10.062 -16.199 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.053 3.947 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.356 5.356 16 C 0.345 3.655 17 O -0.428 6.428 18 C -0.188 4.188 19 C -0.041 4.041 20 C -0.194 4.194 21 C 0.048 3.952 22 C -0.053 4.053 23 C -0.094 4.094 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.145 4.145 27 C -0.118 4.118 28 N -0.186 5.186 29 C -0.010 4.010 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.209 0.791 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.258 -9.701 -16.754 19.491 hybrid contribution 0.341 0.539 0.958 1.151 sum -1.917 -9.161 -15.796 18.361 Atomic orbital electron populations 1.69686 1.05082 1.25678 1.56640 1.24751 0.95444 0.97663 1.02496 0.86168 0.78755 0.84246 0.77240 1.20581 1.21776 1.21911 1.19245 0.90937 0.83979 1.43890 0.91114 1.42396 1.06062 0.99044 1.88045 1.20607 0.95044 0.87003 0.92002 0.91559 1.23024 0.86512 0.97300 0.95339 1.86567 1.32162 1.91915 1.25720 1.21605 0.99698 0.97023 0.82255 1.45920 1.50039 1.21541 1.18055 1.17931 0.78826 0.84447 0.84313 1.90745 1.57319 1.22547 1.72189 1.21130 1.03282 0.97529 0.96884 1.21633 0.91425 0.99106 0.91974 1.22007 1.02998 0.97278 0.97143 1.19961 0.92060 0.90279 0.92922 1.18548 0.99424 0.95472 0.91875 1.21443 0.97646 0.94904 0.95404 1.21199 0.98611 1.00169 0.94498 1.21302 0.97273 0.94487 0.99730 1.21047 1.00785 0.96635 0.95986 1.21257 0.96922 0.99467 0.94132 1.67647 1.11299 1.33871 1.05807 1.23109 0.94500 0.92650 0.90729 0.93436 0.77668 0.95504 0.93264 0.79124 0.90323 0.91854 0.75373 0.83351 0.84047 0.84384 0.85609 0.85943 0.85687 0.85467 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 13.06 55.49 0.72 -26.23 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.71 -16.61 4.51 -53.42 -0.24 -16.85 16 10 C 0.16 3.04 2.84 -67.93 -0.19 2.85 16 11 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.01 6.86 37.15 0.25 1.26 16 13 O -0.56 -9.84 12.64 -35.23 -0.45 -10.28 16 14 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 15 N -0.70 -11.92 5.34 -61.29 -0.33 -12.25 16 16 C 0.56 9.59 7.77 -12.40 -0.10 9.50 16 17 O -0.55 -10.75 16.41 5.30 0.09 -10.66 16 18 C -0.18 -2.74 5.89 -104.78 -0.62 -3.36 16 19 C -0.02 -0.20 9.70 -38.92 -0.38 -0.57 16 20 C -0.17 -1.98 9.44 -39.18 -0.37 -2.35 16 21 C 0.18 2.39 6.73 -82.88 -0.56 1.84 16 22 C -0.05 -0.61 5.88 -104.91 -0.62 -1.22 16 23 C -0.08 -0.85 9.57 -39.23 -0.38 -1.23 16 24 C -0.13 -1.16 10.03 -39.63 -0.40 -1.56 16 25 C -0.11 -0.88 10.04 -39.51 -0.40 -1.28 16 26 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 27 C -0.10 -0.90 9.42 -39.23 -0.37 -1.27 16 28 N -0.48 -7.07 9.40 -9.45 -0.09 -7.16 16 29 C 0.15 2.22 10.70 -17.16 -0.18 2.03 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.36 4.59 9.12 45.56 0.42 5.00 16 35 H 0.08 1.55 7.39 -51.93 -0.38 1.17 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 6.84 6.19 -40.82 -0.25 6.59 16 38 H 0.15 1.75 7.73 -52.49 -0.41 1.35 16 39 H 0.14 1.14 6.17 -52.49 -0.32 0.81 16 40 H 0.14 1.64 7.53 -52.49 -0.40 1.24 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.88 6.17 -52.48 -0.32 0.56 16 45 H 0.17 2.38 6.41 -52.49 -0.34 2.04 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.10 385.01 -9.30 -42.39 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -4.83 Total: 20.30 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -4.96 Total: -1.57 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.07 Total: -62.49 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.36 Total: -20.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.10 -9.30 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.108 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds