Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46936 * 299.99892 * 3 2 1 6 6 H 1.48499 * 109.47107 * 59.99987 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.46509 * 120.00058 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.46614 * 325.00137 * 10 9 7 12 12 C 1.52993 * 109.46999 * 85.00400 * 10 9 7 13 13 O 1.42898 * 109.47318 * 64.99859 * 12 10 9 14 14 C 1.53002 * 109.47018 * 205.00433 * 10 9 7 15 15 N 1.46504 * 109.47287 * 54.99868 * 14 10 9 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 10 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 0.97002 * 120.00083 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47150 * 185.00125 * 12 10 9 33 33 H 1.09009 * 109.47151 * 305.00438 * 12 10 9 34 34 H 0.96701 * 114.00546 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46793 * 295.00133 * 14 10 9 36 36 H 1.08999 * 109.46495 * 175.00012 * 14 10 9 37 37 H 0.97001 * 119.99756 * 0.02562 * 15 14 10 38 38 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 42 42 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 45 45 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 1 2.9687 -3.5505 -0.5899 12 6 2.4219 -4.0357 1.4364 13 8 1.2276 -4.2886 2.1793 14 6 1.1809 -4.7522 -0.6103 15 7 0.7343 -4.3354 -1.9419 16 6 -0.0546 -5.1476 -2.6728 17 8 -0.3961 -6.2258 -2.2270 18 6 -0.5044 -4.7277 -4.0156 19 6 -1.3256 -5.5646 -4.7840 20 6 -1.7203 -5.1298 -6.0333 21 6 -1.2927 -3.8814 -6.4862 22 6 -1.7112 -3.4068 -7.8266 23 6 -1.2902 -2.1614 -8.2910 24 6 -1.6827 -1.7252 -9.5400 25 6 -2.4926 -2.5206 -10.3306 26 6 -2.9134 -3.7572 -9.8751 27 6 -2.5274 -4.2041 -8.6280 28 7 -0.5110 -3.1154 -5.7345 29 6 -0.1177 -3.4915 -4.5371 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0423 -4.9317 1.4300 33 1 2.9715 -3.2164 1.9002 34 1 1.3826 -4.5346 3.1015 35 1 0.3133 -4.9200 0.0278 36 1 1.7559 -5.6746 -0.6920 37 1 1.0071 -3.4753 -2.2978 38 1 -1.6412 -6.5267 -4.4081 39 1 -2.3532 -5.7481 -6.6524 40 1 -0.6576 -1.5397 -7.6749 41 1 -1.3608 -0.7587 -9.8990 42 1 -2.7969 -2.1751 -11.3076 43 1 -3.5453 -4.3740 -10.4969 44 1 -2.8563 -5.1699 -8.2736 45 1 0.5142 -2.8391 -3.9529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676592265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -33.179099 kcal Electronic energy + Delta-G solvation = -28106.539980 eV Core-core repulsion = 24088.188882 eV Total energy + Delta-G solvation = -4018.351098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79852 -40.51128 -39.44285 -38.57128 -36.42415 -35.30164 -34.11544 -33.65923 -33.07267 -31.78653 -30.82639 -29.83065 -26.99922 -25.73598 -25.34493 -24.89819 -23.04285 -22.56398 -21.67852 -21.44348 -19.57615 -19.03110 -18.26249 -18.16865 -17.84126 -17.04659 -16.93823 -16.49347 -16.29666 -15.95318 -15.52119 -15.46117 -15.36585 -15.15135 -15.06474 -14.83926 -14.45893 -14.34250 -14.31399 -14.05335 -13.71440 -13.53058 -13.38077 -13.05736 -12.77312 -12.66486 -12.23199 -12.19032 -11.99709 -11.87658 -11.74024 -11.33631 -11.11876 -10.98293 -10.80306 -10.71494 -10.55386 -10.09903 -9.86482 -9.28619 -9.00897 -7.90307 -5.19453 -0.81803 0.13329 0.49631 0.55145 1.49210 1.50161 1.59070 1.79060 2.12867 2.57432 2.64413 2.94379 3.06753 3.42391 3.48886 3.61430 3.65594 3.75294 3.87682 3.89743 4.00050 4.04761 4.13750 4.18545 4.31605 4.43709 4.50506 4.56327 4.59718 4.61704 4.64915 4.80482 4.87240 4.98746 5.00173 5.02843 5.17012 5.22370 5.37211 5.42289 5.55760 5.56020 5.58999 5.62211 6.04890 6.28287 6.45650 6.73950 7.06539 7.09719 7.36835 8.08814 8.33945 9.32452 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002749 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.183636 B =10183.257621 C =12491.824215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.301 1.301 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.159 3.841 11 H 0.081 0.919 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.560 3.440 17 O -0.576 6.576 18 C -0.201 4.201 19 C -0.015 4.015 20 C -0.162 4.162 21 C 0.178 3.822 22 C -0.080 4.080 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.105 4.105 26 C -0.125 4.125 27 C -0.098 4.098 28 N -0.502 5.502 29 C 0.142 3.858 30 H 0.247 0.753 31 H 0.372 0.628 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.385 0.615 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -11.499 -18.312 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.229 1.229 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.348 3.652 17 O -0.458 6.458 18 C -0.206 4.206 19 C -0.041 4.041 20 C -0.181 4.181 21 C 0.043 3.957 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.116 4.116 28 N -0.211 5.211 29 C -0.017 4.017 30 H 0.056 0.944 31 H 0.204 0.796 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.233 0.767 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.199 0.801 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.105 -11.173 -18.850 22.013 hybrid contribution 0.295 0.906 1.489 1.767 sum -1.810 -10.267 -17.361 20.251 Atomic orbital electron populations 1.69847 1.06633 1.25621 1.59494 1.25464 0.96102 1.00771 1.03996 0.85185 0.78516 0.80504 0.76184 1.18697 1.22522 1.22931 1.19636 0.91494 0.84740 1.40661 0.89967 1.42499 1.05366 1.00230 1.88179 1.20881 0.95139 0.85265 0.93685 0.90105 1.22864 0.86539 0.98668 0.93502 1.86521 1.32894 1.92085 1.27599 1.21465 0.98704 0.97395 0.81980 1.45922 1.50107 1.21542 1.17904 1.18225 0.78156 0.83911 0.84923 1.90714 1.58418 1.23632 1.73038 1.20998 1.05092 0.98299 0.96257 1.21855 0.90699 0.99207 0.92323 1.22350 1.02365 0.96780 0.96655 1.20442 0.91146 0.90713 0.93425 1.18682 1.01300 0.96312 0.91741 1.21455 0.98519 0.95267 0.96471 1.21423 0.98874 1.01150 0.93855 1.21709 0.95844 0.94236 1.00531 1.21477 1.00332 0.96799 0.95695 1.21566 0.95808 0.99999 0.94247 1.67647 1.12524 1.34929 1.05991 1.23025 0.94905 0.92733 0.91054 0.94380 0.79616 0.91502 0.94465 0.76655 0.92747 0.89867 0.75367 0.82155 0.80121 0.86368 0.84221 0.83089 0.82510 0.83078 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.00 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.23 -12.04 9.93 84.03 0.83 -11.20 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -34.00 4.51 -322.94 -1.46 -35.46 16 10 C 0.16 5.78 2.84 44.99 0.13 5.91 16 11 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 12 C 0.07 2.09 6.86 71.98 0.49 2.58 16 13 O -0.58 -19.99 12.64 -148.98 -1.88 -21.88 16 14 C 0.13 4.47 5.12 86.38 0.44 4.92 16 15 N -0.70 -24.42 5.34 -466.11 -2.49 -26.91 16 16 C 0.56 19.68 7.77 86.75 0.67 20.36 16 17 O -0.58 -22.84 16.41 -3.94 -0.06 -22.90 16 18 C -0.20 -6.17 5.89 -19.96 -0.12 -6.29 16 19 C -0.01 -0.37 9.70 22.70 0.22 -0.15 16 20 C -0.16 -3.43 9.44 22.53 0.21 -3.22 16 21 C 0.18 4.61 6.73 41.97 0.28 4.89 16 22 C -0.08 -1.77 5.88 -20.05 -0.12 -1.89 16 23 C -0.10 -2.25 9.57 22.50 0.22 -2.03 16 24 C -0.14 -2.32 10.03 22.24 0.22 -2.10 16 25 C -0.11 -1.37 10.04 22.32 0.22 -1.14 16 26 C -0.13 -1.53 10.03 22.23 0.22 -1.31 16 27 C -0.10 -1.51 9.42 22.50 0.21 -1.30 16 28 N -0.50 -15.50 9.40 -183.83 -1.73 -17.22 16 29 C 0.14 4.43 10.70 85.08 0.91 5.34 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.39 9.19 9.12 -74.06 -0.68 8.52 16 35 H 0.05 2.18 7.39 -2.39 -0.02 2.16 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.41 14.24 6.19 -92.71 -0.57 13.67 16 38 H 0.16 3.60 7.73 -2.91 -0.02 3.58 16 39 H 0.18 2.25 6.17 -2.91 -0.02 2.24 16 40 H 0.12 3.05 7.53 -2.91 -0.02 3.03 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 44 H 0.15 1.48 6.17 -2.91 -0.02 1.47 16 45 H 0.16 4.98 6.41 -2.91 -0.02 4.96 16 Total: -1.00 -73.59 385.01 -0.69 -74.28 By element: Atomic # 1 Polarization: 51.97 SS G_CDS: -0.91 Total: 51.06 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.53 Total: 9.92 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -5.39 Total: -137.49 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.95 Total: -44.78 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.59 -0.69 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.106 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds