Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48496 * 109.46985 * 89.99824 * 3 2 1 5 5 H 1.48496 * 109.47096 * 210.00344 * 3 2 1 6 6 H 1.48496 * 109.47064 * 329.99958 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00415 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99955 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47102 * 187.56464 * 10 9 7 12 12 H 1.08996 * 109.87569 * 312.10569 * 11 10 9 13 13 C 1.54316 * 109.88610 * 191.08173 * 11 10 9 14 14 C 1.55155 * 102.94956 * 218.39353 * 13 11 10 15 15 C 1.54912 * 101.57831 * 35.50099 * 14 13 11 16 16 N 1.47027 * 109.87733 * 73.27792 * 11 10 9 17 17 C 1.34780 * 125.64930 * 298.33285 * 16 11 10 18 18 O 1.21641 * 119.99878 * 4.91459 * 17 16 11 19 19 C 1.47137 * 119.99941 * 184.91479 * 17 16 11 20 20 C 1.37938 * 120.55010 * 333.55833 * 19 17 16 21 21 N 1.33966 * 122.19843 * 179.65469 * 20 19 17 22 22 H 0.96998 * 118.59539 * 180.28409 * 21 20 19 23 23 C 1.37799 * 122.80366 * 0.68344 * 21 20 19 24 24 C 1.39280 * 120.52114 * 179.64126 * 23 21 20 25 25 C 1.37734 * 119.96704 * 179.97438 * 24 23 21 26 26 C 1.38786 * 120.72909 * 0.02562 * 25 24 23 27 27 C 1.37713 * 120.29476 * 359.97438 * 26 25 24 28 28 C 1.39498 * 119.60275 * 359.97438 * 27 26 25 29 29 C 1.47151 * 120.55154 * 153.83290 * 19 17 16 30 30 O 1.21850 * 121.41000 * 0.02664 * 29 19 17 31 31 H 0.96994 * 120.00356 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47185 * 307.57037 * 10 9 7 34 34 H 1.08999 * 109.46797 * 67.56805 * 10 9 7 35 35 H 1.09008 * 110.71756 * 336.76102 * 13 11 10 36 36 H 1.09000 * 110.71894 * 100.02460 * 13 11 10 37 37 H 1.09000 * 111.00750 * 153.57497 * 14 13 11 38 38 H 1.08996 * 111.00322 * 277.43318 * 14 13 11 39 39 H 1.09001 * 110.36698 * 81.82974 * 15 14 13 40 40 H 1.08992 * 110.36825 * 204.15173 * 15 14 13 41 41 H 1.07994 * 118.90669 * 359.97438 * 20 19 17 42 42 H 1.07995 * 120.01866 * 359.96153 * 24 23 21 43 43 H 1.07996 * 119.63619 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.85855 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.20467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0749 -4.8135 -0.1904 12 1 0.2293 -4.6961 0.4873 13 6 1.7846 -6.1561 0.0834 14 6 1.1791 -7.0953 -0.9930 15 6 1.0069 -6.1265 -2.1895 16 7 0.6031 -4.8451 -1.5826 17 6 -0.0850 -3.8652 -2.2013 18 8 -0.2879 -2.8106 -1.6302 19 6 -0.5908 -4.0712 -3.5676 20 6 0.0358 -4.9550 -4.4214 21 7 -0.4004 -5.1730 -5.6691 22 1 0.0777 -5.8093 -6.2236 23 6 -1.4945 -4.5260 -6.2012 24 6 -1.9024 -4.7837 -7.5078 25 6 -2.9980 -4.1309 -8.0279 26 6 -3.7056 -3.2135 -7.2639 27 6 -3.3202 -2.9431 -5.9697 28 6 -2.2132 -3.5976 -5.4294 29 6 -1.7698 -3.3333 -4.0479 30 8 -2.3551 -2.5376 -3.3344 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.7824 -3.6582 -0.8150 34 1 2.5794 -3.7753 0.9494 35 1 2.8617 -6.0577 -0.0523 36 1 1.5526 -6.5176 1.0852 37 1 1.8688 -7.9024 -1.2399 38 1 0.2166 -7.4912 -0.6693 39 1 1.9500 -6.0125 -2.7241 40 1 0.2300 -6.4891 -2.8624 41 1 0.9040 -5.4931 -4.0706 42 1 -1.3599 -5.4950 -8.1128 43 1 -3.3099 -4.3351 -9.0415 44 1 -4.5624 -2.7093 -7.6860 45 1 -3.8717 -2.2286 -5.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699754201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = 32.941172 kcal Electronic energy + Delta-G solvation = -30144.153669 eV Core-core repulsion = 26128.669761 eV Total energy + Delta-G solvation = -4015.483908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.14790 -39.63336 -37.88723 -37.40876 -36.44428 -34.16219 -32.41418 -31.45998 -31.05922 -30.50417 -29.78564 -28.62017 -25.18806 -24.40867 -24.06969 -22.87876 -22.29878 -21.56004 -21.13093 -19.28468 -18.57705 -18.23331 -17.46791 -16.80089 -16.27282 -15.86084 -15.64785 -15.08711 -14.97414 -14.62832 -14.47503 -14.17382 -14.03477 -13.72439 -13.49540 -13.24410 -13.16709 -12.96807 -12.75463 -12.62205 -12.31630 -12.16479 -12.02229 -11.59693 -11.49765 -11.38631 -11.08700 -10.96455 -10.61419 -10.52347 -10.37588 -9.83984 -9.47109 -9.39236 -9.28350 -9.21753 -8.63153 -8.50072 -7.99699 -7.77550 -6.40440 -5.29087 -2.57158 0.64950 0.71547 1.57779 2.61637 2.87329 3.36899 3.63329 3.65019 3.68041 3.71632 4.09534 4.17152 4.37545 4.50379 4.59597 4.63544 4.76686 4.86636 4.91713 4.95395 4.95747 5.05443 5.28332 5.36694 5.41087 5.52936 5.60222 5.62185 5.75205 5.77058 5.78537 5.89768 5.95047 6.03140 6.13504 6.19129 6.30877 6.35404 6.40619 6.60172 6.73579 6.80042 6.82774 6.94779 7.15658 8.01571 8.11414 8.15897 8.82314 9.14869 9.99825 10.67354 11.07378 11.90897 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.004177 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.960546 B = 6701.285523 C = 8865.288516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 0.893 3.107 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.058 0.942 9 N -0.719 5.719 10 C 0.146 3.854 11 C 0.133 3.867 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.089 3.911 16 N -0.620 5.620 17 C 0.562 3.438 18 O -0.422 6.422 19 C -0.293 4.293 20 C 0.169 3.831 21 N -0.603 5.603 22 H 0.417 0.583 23 C 0.184 3.816 24 C -0.174 4.174 25 C -0.063 4.063 26 C -0.158 4.158 27 C -0.030 4.030 28 C -0.181 4.181 29 C 0.425 3.575 30 O -0.435 6.435 31 H 0.248 0.752 32 H 0.401 0.599 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.177 0.823 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -21.952 -17.643 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.205 4.205 3 Si 0.725 3.275 4 H -0.221 1.221 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.076 0.924 9 N -0.372 5.372 10 C 0.017 3.983 11 C 0.030 3.970 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.035 4.035 16 N -0.360 5.360 17 C 0.348 3.652 18 O -0.288 6.288 19 C -0.305 4.305 20 C 0.039 3.961 21 N -0.212 5.212 22 H 0.253 0.747 23 C 0.083 3.917 24 C -0.195 4.195 25 C -0.082 4.082 26 C -0.177 4.177 27 C -0.048 4.048 28 C -0.185 4.185 29 C 0.304 3.696 30 O -0.310 6.310 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.194 0.806 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.625 -20.611 -16.933 26.804 hybrid contribution 0.733 0.550 -0.520 1.054 sum -1.892 -20.061 -17.453 26.658 Atomic orbital electron populations 1.69752 1.04613 1.24427 1.56686 1.24684 0.95266 0.96906 1.03634 0.86410 0.78596 0.85343 0.77161 1.22144 1.21259 1.22079 1.19079 0.90285 0.84816 1.43035 0.92359 1.42982 1.07302 0.98669 1.88216 1.20946 0.93183 0.86988 0.97174 1.21851 0.97334 0.95251 0.82613 0.90944 1.22632 1.00482 0.93852 0.99267 1.22763 1.01654 0.97156 0.95415 1.22533 0.98891 0.85310 0.96730 1.48384 1.57627 1.16828 1.13155 1.17166 0.79662 0.83582 0.84834 1.91047 1.51875 1.22320 1.63592 1.22090 1.04493 1.06734 0.97173 1.22685 0.96639 0.93625 0.83129 1.40776 1.27045 1.40368 1.12983 0.74666 1.17910 0.87744 0.93020 0.93061 1.20651 1.00693 1.04809 0.93324 1.21063 0.93448 0.94165 0.99554 1.21133 1.01720 1.00439 0.94449 1.21214 0.93179 0.95666 0.94771 1.20358 0.99649 1.01388 0.97099 1.19394 0.83328 0.81300 0.85570 1.90822 1.53647 1.29095 1.57454 0.94141 0.75523 0.96654 0.96851 0.90418 0.90222 0.90257 0.90669 0.91805 0.91004 0.80616 0.85086 0.85209 0.85169 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -31.41 13.06 55.49 0.72 -30.69 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.89 24.89 29.55 -169.99 -5.02 19.87 16 4 H -0.29 -8.03 7.11 56.52 0.40 -7.62 16 5 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.29 -8.28 7.11 56.52 0.40 -7.88 16 7 C -0.24 -7.61 9.99 -15.06 -0.15 -7.76 16 8 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -20.95 4.10 -59.91 -0.25 -21.19 16 10 C 0.15 3.28 5.63 -4.04 -0.02 3.26 16 11 C 0.13 2.35 3.10 -66.96 -0.21 2.14 16 12 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.12 -1.46 6.46 -24.90 -0.16 -1.62 16 14 C -0.13 -1.17 7.09 -24.58 -0.17 -1.35 16 15 C 0.09 0.92 5.02 -2.53 -0.01 0.91 16 16 N -0.62 -10.51 3.06 -164.38 -0.50 -11.01 16 17 C 0.56 12.01 7.43 -12.65 -0.09 11.92 16 18 O -0.42 -11.94 11.93 -12.07 -0.14 -12.09 16 19 C -0.29 -5.10 5.89 -102.78 -0.61 -5.70 16 20 C 0.17 1.84 9.07 -16.73 -0.15 1.69 16 21 N -0.60 -4.83 5.21 -10.42 -0.05 -4.88 16 22 H 0.42 1.42 8.73 -40.82 -0.36 1.06 16 23 C 0.18 1.92 6.66 -83.94 -0.56 1.36 16 24 C -0.17 -1.30 9.87 -39.38 -0.39 -1.69 16 25 C -0.06 -0.47 10.01 -39.56 -0.40 -0.87 16 26 C -0.16 -1.47 10.03 -39.57 -0.40 -1.87 16 27 C -0.03 -0.38 9.65 -39.30 -0.38 -0.76 16 28 C -0.18 -2.62 5.89 -104.81 -0.62 -3.24 16 29 C 0.42 8.23 7.12 -32.20 -0.23 8.00 16 30 O -0.44 -10.65 16.16 -12.26 -0.20 -10.85 16 31 H 0.25 8.35 8.31 -40.82 -0.34 8.01 16 32 H 0.40 12.68 4.87 -40.85 -0.20 12.48 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.31 8.11 -51.93 -0.42 -0.12 16 35 H 0.08 0.87 7.85 -51.92 -0.41 0.46 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 40 H 0.07 0.60 6.02 -51.93 -0.31 0.29 16 41 H 0.18 1.37 4.37 -52.49 -0.23 1.14 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.14 1.89 7.79 -52.49 -0.41 1.49 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -45.12 364.93 -10.23 -55.36 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.65 Total: 5.92 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -4.64 Total: 4.07 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.08 Total: -67.78 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.34 Total: -22.94 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.02 Total: 19.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -45.12 -10.23 -55.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699754201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.297 kcal (2) G-P(sol) polarization free energy of solvation -45.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds