Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47115 * 90.00396 * 3 2 1 5 5 H 1.48501 * 109.46892 * 210.00390 * 3 2 1 6 6 H 1.48493 * 109.47198 * 330.00264 * 3 2 1 7 7 C 1.38810 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00565 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00372 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46883 * 172.74572 * 10 9 7 12 12 H 1.08992 * 109.87951 * 43.58045 * 11 10 9 13 13 C 1.54326 * 109.87911 * 164.59324 * 11 10 9 14 14 C 1.55157 * 102.94143 * 141.60708 * 13 11 10 15 15 C 1.54903 * 101.58447 * 324.49620 * 14 13 11 16 16 N 1.47021 * 109.88030 * 282.39602 * 11 10 9 17 17 C 1.34779 * 125.64351 * 61.60678 * 16 11 10 18 18 O 1.21582 * 120.00070 * 8.41908 * 17 16 11 19 19 C 1.47559 * 119.99643 * 188.42352 * 17 16 11 20 20 C 1.38910 * 120.30065 * 11.09638 * 19 17 16 21 21 C 1.40553 * 118.06967 * 179.74817 * 20 19 17 22 22 C 1.40542 * 121.13330 * 180.18605 * 21 20 19 23 23 C 1.36144 * 119.64234 * 180.34498 * 22 21 20 24 24 C 1.39335 * 120.83324 * 359.97438 * 23 22 21 25 25 C 1.36142 * 121.06972 * 359.95570 * 24 23 22 26 26 C 1.40521 * 119.83288 * 0.09225 * 25 24 23 27 27 N 1.33814 * 120.74634 * 179.88125 * 26 25 24 28 28 C 1.31379 * 121.66405 * 180.02562 * 27 26 25 29 29 O 1.35410 * 119.31480 * 180.02562 * 28 27 26 30 30 H 0.96992 * 119.99706 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99870 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46849 * 292.74165 * 10 9 7 33 33 H 1.08993 * 109.47317 * 52.74126 * 10 9 7 34 34 H 1.09001 * 110.72400 * 259.96699 * 13 11 10 35 35 H 1.09003 * 110.72445 * 23.24449 * 13 11 10 36 36 H 1.09004 * 111.00821 * 82.57333 * 14 13 11 37 37 H 1.09007 * 111.00810 * 206.38637 * 14 13 11 38 38 H 1.08998 * 110.37254 * 155.84378 * 15 14 13 39 39 H 1.09000 * 110.37532 * 278.06399 * 15 14 13 40 40 H 1.08005 * 120.96543 * 0.02562 * 20 19 17 41 41 H 1.08007 * 120.18180 * 0.32119 * 22 21 20 42 42 H 1.07999 * 119.58684 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.46395 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.08016 * 179.97438 * 25 24 23 45 45 H 0.96702 * 114.00569 * 269.97504 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6526 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0737 -4.8139 0.1816 12 1 0.1954 -4.6553 -0.4439 13 6 1.7541 -6.1463 -0.1973 14 6 1.1956 -7.1347 0.8603 15 6 1.0962 -6.2276 2.1120 16 7 0.6748 -4.9135 1.5932 17 6 0.0313 -3.9608 2.2966 18 8 -0.4033 -2.9764 1.7306 19 6 -0.1457 -4.1124 3.7536 20 6 0.5380 -5.1059 4.4430 21 6 0.3387 -5.2047 5.8308 22 6 1.0006 -6.1833 6.5921 23 6 0.7797 -6.2562 7.9335 24 6 -0.0946 -5.3722 8.5624 25 6 -0.7511 -4.4114 7.8558 26 6 -0.5510 -4.3040 6.4691 27 7 -1.1886 -3.3680 5.7563 28 6 -1.0153 -3.2517 4.4592 29 8 -1.6845 -2.2869 3.7848 30 1 -0.4849 -0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.5837 -3.7729 -0.9483 33 1 2.7785 -3.6605 0.8173 34 1 1.4664 -6.4541 -1.2026 35 1 2.8377 -6.0635 -0.1134 36 1 0.2133 -7.5060 0.5679 37 1 1.8883 -7.9593 1.0288 38 1 0.3514 -6.6181 2.8054 39 1 2.0664 -6.1501 2.6026 40 1 1.2068 -5.7798 3.9283 41 1 1.6805 -6.8740 6.1155 42 1 1.2885 -7.0088 8.5176 43 1 -0.2531 -5.4496 9.6279 44 1 -1.4255 -3.7347 8.3595 45 1 -2.5468 -2.5676 3.4490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699755215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 33.427292 kcal Electronic energy + Delta-G solvation = -30274.390491 eV Core-core repulsion = 26258.927663 eV Total energy + Delta-G solvation = -4015.462828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.25677 -39.84035 -38.35987 -36.87667 -35.85570 -34.66463 -33.75536 -31.71945 -31.28693 -30.11481 -29.88091 -28.59198 -25.49624 -24.41678 -23.85248 -22.95834 -22.52281 -21.85672 -21.10724 -19.38108 -19.06838 -18.15777 -17.17971 -16.91776 -16.53926 -16.31521 -16.00859 -15.32756 -14.98824 -14.64885 -14.37857 -14.18124 -13.87837 -13.68267 -13.65504 -13.45918 -13.25820 -13.13461 -12.87411 -12.55373 -12.19418 -12.00095 -11.87492 -11.63519 -11.51087 -11.34938 -11.17425 -10.94734 -10.73519 -10.59799 -10.52934 -10.32287 -9.85540 -9.75843 -9.20388 -8.90394 -8.80858 -8.63507 -8.45649 -8.27685 -6.64362 -5.78258 -2.75079 0.05615 0.47175 1.68009 2.44953 3.05425 3.40191 3.58385 3.64767 3.72374 3.84827 3.91855 4.23359 4.29937 4.41881 4.49007 4.57309 4.66572 4.79696 4.84099 4.88723 4.95159 5.01491 5.16572 5.19316 5.26041 5.35764 5.50408 5.53142 5.61890 5.65385 5.72634 5.77732 5.85587 5.87936 5.97677 6.05842 6.12094 6.14744 6.20366 6.33825 6.40634 6.54963 6.73588 6.88439 7.59655 7.75916 7.87196 8.05703 8.57797 9.13701 9.64674 10.48445 10.64540 11.72456 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.004077 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.207534 B = 6866.161528 C = 8576.374439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.078 2.922 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.336 4.336 8 H 0.054 0.946 9 N -0.733 5.733 10 C 0.152 3.848 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.088 3.912 16 N -0.614 5.614 17 C 0.564 3.436 18 O -0.454 6.454 19 C -0.182 4.182 20 C -0.036 4.036 21 C -0.124 4.124 22 C -0.083 4.083 23 C -0.128 4.128 24 C -0.092 4.092 25 C -0.101 4.101 26 C 0.165 3.835 27 N -0.504 5.504 28 C 0.399 3.601 29 O -0.448 6.448 30 H 0.265 0.735 31 H 0.382 0.618 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -22.431 13.264 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.240 4.240 3 Si 0.911 3.089 4 H -0.227 1.227 5 H -0.225 1.225 6 H -0.215 1.215 7 C -0.468 4.468 8 H 0.072 0.928 9 N -0.384 5.384 10 C 0.023 3.977 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.035 4.035 16 N -0.351 5.351 17 C 0.350 3.650 18 O -0.324 6.324 19 C -0.189 4.189 20 C -0.061 4.061 21 C -0.126 4.126 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.112 4.112 25 C -0.120 4.120 26 C 0.043 3.957 27 N -0.224 5.224 28 C 0.205 3.795 29 O -0.254 6.254 30 H 0.077 0.923 31 H 0.220 0.780 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.184 0.816 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.039 -19.183 13.545 23.483 hybrid contribution 0.325 -2.361 -0.340 2.407 sum 0.286 -21.544 13.205 25.271 Atomic orbital electron populations 1.70684 1.05892 1.29376 1.52324 1.25577 0.97207 1.00420 1.00752 0.83280 0.73770 0.75903 0.75989 1.22676 1.22499 1.21530 1.19931 0.91407 0.86258 1.49179 0.92755 1.42627 1.05896 0.99888 1.89968 1.20934 0.93118 0.86031 0.97635 1.21915 0.98237 0.95701 0.81367 0.90659 1.22646 1.00923 0.93346 0.99337 1.22804 1.02086 0.97387 0.94787 1.22673 0.99456 0.84128 0.97206 1.48315 1.59035 1.15589 1.12185 1.17418 0.79710 0.82724 0.85167 1.90925 1.44946 1.27156 1.69365 1.21239 1.03370 0.98460 0.95808 1.22940 0.95132 0.95194 0.92877 1.18821 1.00495 0.99229 0.94090 1.21000 0.98220 0.96722 0.94220 1.20894 0.99106 0.99822 0.94764 1.20947 0.95568 0.94360 1.00316 1.20838 1.00627 0.99191 0.91308 1.18708 0.92487 0.90432 0.94063 1.67590 1.26420 1.20921 1.07466 1.19277 0.89685 0.84310 0.86266 1.84885 1.35723 1.33975 1.70855 0.92347 0.77962 0.96376 0.96379 0.89950 0.90235 0.90532 0.89866 0.90415 0.91218 0.81579 0.85053 0.85394 0.85175 0.84520 0.73682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.83 13.70 55.49 0.76 -31.07 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 28.57 29.92 -169.99 -5.09 23.48 16 4 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.34 -10.49 9.99 -15.06 -0.15 -10.64 16 8 H 0.05 1.67 7.83 -52.48 -0.41 1.26 16 9 N -0.73 -20.48 4.46 -59.91 -0.27 -20.75 16 10 C 0.15 3.30 5.60 -4.04 -0.02 3.28 16 11 C 0.13 2.17 3.01 -66.95 -0.20 1.97 16 12 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 13 C -0.12 -1.38 6.43 -24.90 -0.16 -1.54 16 14 C -0.13 -1.11 7.08 -24.59 -0.17 -1.29 16 15 C 0.09 0.90 4.89 -2.53 -0.01 0.89 16 16 N -0.61 -9.71 3.07 -164.23 -0.50 -10.21 16 17 C 0.56 10.90 7.45 -12.46 -0.09 10.80 16 18 O -0.45 -11.08 12.08 -16.37 -0.20 -11.28 16 19 C -0.18 -3.05 5.86 -104.71 -0.61 -3.66 16 20 C -0.04 -0.46 8.10 -38.46 -0.31 -0.78 16 21 C -0.12 -1.52 5.74 -106.80 -0.61 -2.13 16 22 C -0.08 -0.73 9.77 -39.47 -0.39 -1.11 16 23 C -0.13 -0.97 9.96 -39.93 -0.40 -1.37 16 24 C -0.09 -0.76 9.94 -39.93 -0.40 -1.15 16 25 C -0.10 -1.12 9.97 -39.48 -0.39 -1.51 16 26 C 0.17 2.32 6.61 -84.79 -0.56 1.76 16 27 N -0.50 -8.45 10.33 -10.76 -0.11 -8.56 16 28 C 0.40 7.15 7.73 -16.61 -0.13 7.02 16 29 O -0.45 -8.62 11.66 -39.59 -0.46 -9.08 16 30 H 0.26 9.05 6.77 -40.82 -0.28 8.77 16 31 H 0.38 11.17 4.06 -40.82 -0.17 11.00 16 32 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.08 0.67 6.34 -51.93 -0.33 0.34 16 39 H 0.07 0.63 7.10 -51.93 -0.37 0.26 16 40 H 0.17 1.64 3.61 -52.48 -0.19 1.45 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.40 5.71 9.06 45.56 0.41 6.12 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -41.60 363.72 -9.85 -51.44 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.75 Total: 11.37 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -4.71 Total: -0.83 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -0.12 Total: -70.59 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.66 Total: -20.36 kcal Atomic # 14 Polarization: 28.57 SS G_CDS: -5.09 Total: 23.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.60 -9.85 -51.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699755215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.870 kcal (2) G-P(sol) polarization free energy of solvation -41.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds