Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47115 * 90.00396 * 3 2 1 5 5 H 1.48501 * 109.46892 * 210.00390 * 3 2 1 6 6 H 1.48493 * 109.47198 * 330.00264 * 3 2 1 7 7 C 1.38810 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00565 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00372 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46883 * 172.74572 * 10 9 7 12 12 H 1.08992 * 109.87951 * 43.58045 * 11 10 9 13 13 C 1.54326 * 109.87911 * 164.59324 * 11 10 9 14 14 C 1.55157 * 102.94143 * 141.60708 * 13 11 10 15 15 C 1.54903 * 101.58447 * 324.49620 * 14 13 11 16 16 N 1.47021 * 109.88030 * 282.39602 * 11 10 9 17 17 C 1.34779 * 125.64351 * 61.60678 * 16 11 10 18 18 O 1.21582 * 120.00070 * 8.41908 * 17 16 11 19 19 C 1.47559 * 119.99643 * 188.42352 * 17 16 11 20 20 C 1.38910 * 120.30065 * 11.09638 * 19 17 16 21 21 C 1.40553 * 118.06967 * 179.74817 * 20 19 17 22 22 C 1.40542 * 121.13330 * 180.18605 * 21 20 19 23 23 C 1.36144 * 119.64234 * 180.34498 * 22 21 20 24 24 C 1.39335 * 120.83324 * 359.97438 * 23 22 21 25 25 C 1.36142 * 121.06972 * 359.95570 * 24 23 22 26 26 C 1.40521 * 119.83288 * 0.09225 * 25 24 23 27 27 N 1.33814 * 120.74634 * 179.88125 * 26 25 24 28 28 C 1.31379 * 121.66405 * 180.02562 * 27 26 25 29 29 O 1.35410 * 119.31480 * 180.02562 * 28 27 26 30 30 H 0.96992 * 119.99706 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99870 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46849 * 292.74165 * 10 9 7 33 33 H 1.08993 * 109.47317 * 52.74126 * 10 9 7 34 34 H 1.09001 * 110.72400 * 259.96699 * 13 11 10 35 35 H 1.09003 * 110.72445 * 23.24449 * 13 11 10 36 36 H 1.09004 * 111.00821 * 82.57333 * 14 13 11 37 37 H 1.09007 * 111.00810 * 206.38637 * 14 13 11 38 38 H 1.08998 * 110.37254 * 155.84378 * 15 14 13 39 39 H 1.09000 * 110.37532 * 278.06399 * 15 14 13 40 40 H 1.08005 * 120.96543 * 0.02562 * 20 19 17 41 41 H 1.08007 * 120.18180 * 0.32119 * 22 21 20 42 42 H 1.07999 * 119.58684 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.46395 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.08016 * 179.97438 * 25 24 23 45 45 H 0.96702 * 114.00569 * 269.97504 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6526 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0737 -4.8139 0.1816 12 1 0.1954 -4.6553 -0.4439 13 6 1.7541 -6.1463 -0.1973 14 6 1.1956 -7.1347 0.8603 15 6 1.0962 -6.2276 2.1120 16 7 0.6748 -4.9135 1.5932 17 6 0.0313 -3.9608 2.2966 18 8 -0.4033 -2.9764 1.7306 19 6 -0.1457 -4.1124 3.7536 20 6 0.5380 -5.1059 4.4430 21 6 0.3387 -5.2047 5.8308 22 6 1.0006 -6.1833 6.5921 23 6 0.7797 -6.2562 7.9335 24 6 -0.0946 -5.3722 8.5624 25 6 -0.7511 -4.4114 7.8558 26 6 -0.5510 -4.3040 6.4691 27 7 -1.1886 -3.3680 5.7563 28 6 -1.0153 -3.2517 4.4592 29 8 -1.6845 -2.2869 3.7848 30 1 -0.4849 -0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.5837 -3.7729 -0.9483 33 1 2.7785 -3.6605 0.8173 34 1 1.4664 -6.4541 -1.2026 35 1 2.8377 -6.0635 -0.1134 36 1 0.2133 -7.5060 0.5679 37 1 1.8883 -7.9593 1.0288 38 1 0.3514 -6.6181 2.8054 39 1 2.0664 -6.1501 2.6026 40 1 1.2068 -5.7798 3.9283 41 1 1.6805 -6.8740 6.1155 42 1 1.2885 -7.0088 8.5176 43 1 -0.2531 -5.4496 9.6279 44 1 -1.4255 -3.7347 8.3595 45 1 -2.5468 -2.5676 3.4490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699755215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = 0.378762 kcal Electronic energy + Delta-G solvation = -30275.823583 eV Core-core repulsion = 26258.927663 eV Total energy + Delta-G solvation = -4016.895920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32790 -40.99433 -39.47369 -38.20033 -36.99583 -36.55829 -34.96233 -33.28150 -32.65109 -31.14606 -30.79213 -30.14168 -26.81819 -25.91209 -24.91048 -24.65753 -23.49306 -23.25297 -22.03183 -20.56395 -20.30393 -19.41605 -19.03552 -18.17058 -17.69694 -17.61736 -17.06384 -16.71590 -16.03439 -15.85220 -15.63015 -15.42295 -15.26097 -15.16626 -14.93838 -14.82862 -14.68623 -14.34082 -13.94964 -13.76469 -13.56241 -13.04005 -12.96739 -12.65948 -12.61698 -12.57127 -12.43436 -12.41175 -12.17940 -12.00995 -11.87419 -11.67043 -11.56207 -11.21485 -11.01698 -10.92438 -10.47746 -9.84881 -9.58967 -9.30194 -8.94405 -8.31600 -5.20620 -0.87437 -0.54474 0.80470 1.45155 1.48640 1.63059 1.76434 1.85135 2.18321 2.49530 2.72213 2.94886 3.24394 3.36753 3.47889 3.51420 3.61335 3.65004 3.75824 3.93101 3.99395 4.15515 4.17248 4.22656 4.27725 4.31883 4.33404 4.45663 4.55256 4.59941 4.70336 4.71937 4.81153 4.86687 4.96881 5.02431 5.06157 5.13603 5.29566 5.34418 5.35051 5.44709 5.47688 5.57876 5.83712 6.42092 6.51981 6.61106 6.74052 7.13332 7.37013 8.20901 8.29837 9.21647 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.004077 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.207534 B = 6866.161528 C = 8576.374439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.107 4.107 3 Si 1.129 2.871 4 H -0.294 1.294 5 H -0.268 1.268 6 H -0.289 1.289 7 C -0.340 4.340 8 H 0.055 0.945 9 N -0.750 5.750 10 C 0.148 3.852 11 C 0.132 3.868 12 H 0.047 0.953 13 C -0.114 4.114 14 C -0.115 4.115 15 C 0.074 3.926 16 N -0.612 5.612 17 C 0.555 3.445 18 O -0.525 6.525 19 C -0.217 4.217 20 C -0.008 4.008 21 C -0.136 4.136 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.067 4.067 25 C -0.131 4.131 26 C 0.136 3.864 27 N -0.529 5.529 28 C 0.367 3.633 29 O -0.482 6.482 30 H 0.247 0.753 31 H 0.372 0.628 32 H 0.026 0.974 33 H 0.010 0.990 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.202 0.798 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.135 0.865 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -27.189 15.762 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.299 4.299 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.193 1.193 6 H -0.215 1.215 7 C -0.472 4.472 8 H 0.074 0.926 9 N -0.399 5.399 10 C 0.021 3.979 11 C 0.028 3.972 12 H 0.065 0.935 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.047 4.047 16 N -0.348 5.348 17 C 0.343 3.657 18 O -0.401 6.401 19 C -0.224 4.224 20 C -0.033 4.033 21 C -0.138 4.138 22 C -0.096 4.096 23 C -0.134 4.134 24 C -0.087 4.087 25 C -0.150 4.150 26 C 0.015 3.985 27 N -0.250 5.250 28 C 0.174 3.826 29 O -0.290 6.290 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.218 0.782 41 H 0.190 0.810 42 H 0.190 0.810 43 H 0.184 0.816 44 H 0.153 0.847 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.285 -24.061 16.055 29.111 hybrid contribution -0.623 -1.111 -0.863 1.539 sum 2.662 -25.172 15.191 29.521 Atomic orbital electron populations 1.70806 1.07155 1.28392 1.55261 1.27195 0.97265 1.04563 1.00853 0.82645 0.73783 0.71790 0.76350 1.22203 1.19280 1.21485 1.20337 0.91644 0.87867 1.47327 0.92649 1.42898 1.05815 1.01261 1.89909 1.21170 0.93918 0.85647 0.97199 1.21873 0.96349 0.96932 0.82036 0.93453 1.22653 1.01038 0.90381 1.01174 1.22836 1.03377 0.97123 0.91952 1.23145 1.01050 0.81522 0.98966 1.48400 1.57583 1.16990 1.11789 1.17955 0.79013 0.82406 0.86325 1.90881 1.48207 1.30163 1.70820 1.21006 1.05935 1.00933 0.94493 1.23313 0.93398 0.93422 0.93195 1.19117 1.00626 0.99985 0.94048 1.21471 0.97685 0.95755 0.94677 1.21469 0.97713 0.99588 0.94631 1.21467 0.93207 0.92096 1.01931 1.21014 1.02491 1.01186 0.90317 1.19291 0.93291 0.90608 0.95303 1.67509 1.27829 1.22512 1.07114 1.19466 0.90979 0.85277 0.86911 1.84821 1.36722 1.35931 1.71542 0.94200 0.79078 0.95653 0.97221 0.88432 0.89116 0.89996 0.85566 0.88285 0.88830 0.78189 0.80984 0.81002 0.81581 0.84733 0.72803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -69.71 13.70 21.65 0.30 -69.41 16 2 C -0.11 -7.10 5.50 84.86 0.47 -6.63 16 3 Si 1.13 59.33 29.92 68.60 2.05 61.38 16 4 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 7 C -0.34 -22.07 9.99 84.03 0.84 -21.23 16 8 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 9 N -0.75 -44.33 4.46 -343.46 -1.53 -45.86 16 10 C 0.15 6.65 5.60 86.38 0.48 7.13 16 11 C 0.13 4.45 3.01 45.34 0.14 4.58 16 12 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 13 C -0.11 -2.21 6.43 31.78 0.20 -2.00 16 14 C -0.12 -1.39 7.08 31.98 0.23 -1.16 16 15 C 0.07 1.25 4.89 86.85 0.42 1.68 16 16 N -0.61 -19.51 3.07 -791.77 -2.43 -21.94 16 17 C 0.55 23.03 7.45 86.70 0.65 23.67 16 18 O -0.53 -28.43 12.08 16.74 0.20 -28.23 16 19 C -0.22 -7.71 5.86 -19.92 -0.12 -7.82 16 20 C -0.01 -0.20 8.10 23.00 0.19 -0.02 16 21 C -0.14 -3.03 5.74 -21.28 -0.12 -3.15 16 22 C -0.08 -0.94 9.77 22.34 0.22 -0.72 16 23 C -0.12 -1.05 9.96 22.05 0.22 -0.83 16 24 C -0.07 -0.81 9.94 22.05 0.22 -0.59 16 25 C -0.13 -2.74 9.97 22.34 0.22 -2.52 16 26 C 0.14 3.86 6.61 40.27 0.27 4.12 16 27 N -0.53 -19.22 10.33 -301.42 -3.11 -22.34 16 28 C 0.37 14.61 7.73 85.50 0.66 15.27 16 29 O -0.48 -21.42 11.66 -66.32 -0.77 -22.19 16 30 H 0.25 18.30 6.77 -92.71 -0.63 17.67 16 31 H 0.37 23.59 4.06 -92.71 -0.38 23.22 16 32 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 36 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.10 1.31 6.34 -2.39 -0.02 1.29 16 39 H 0.09 1.21 7.10 -2.39 -0.02 1.19 16 40 H 0.20 3.17 3.61 -2.91 -0.01 3.16 16 41 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 43 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.41 14.41 9.06 -74.06 -0.67 13.74 16 Total: -1.00 -103.30 363.72 0.04 -103.26 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.15 Total: 35.55 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.18 Total: 9.78 kcal Atomic # 7 Polarization: -152.76 SS G_CDS: -6.77 Total: -159.54 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.57 Total: -50.42 kcal Atomic # 14 Polarization: 59.33 SS G_CDS: 2.05 Total: 61.38 kcal Total: -103.30 0.04 -103.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699755215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.634 kcal (2) G-P(sol) polarization free energy of solvation -103.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds