Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99296 * 2 1 4 4 H 1.48501 * 109.46987 * 265.10456 * 3 2 1 5 5 H 1.48494 * 109.47568 * 25.10781 * 3 2 1 6 6 H 1.48498 * 109.46652 * 145.10682 * 3 2 1 7 7 C 1.38810 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 331.96390 * 7 2 1 9 9 N 1.36939 * 119.99437 * 151.96766 * 7 2 1 10 10 C 1.47022 * 125.65278 * 352.26799 * 9 7 2 11 11 C 1.54322 * 107.26896 * 181.02445 * 10 9 7 12 12 C 1.55154 * 102.94377 * 22.19334 * 11 10 9 13 13 O 1.42894 * 111.00715 * 82.57439 * 12 11 10 14 14 C 1.53002 * 111.00225 * 206.38604 * 12 11 10 15 15 N 1.46503 * 109.47113 * 179.97438 * 14 12 11 16 16 C 1.34774 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21541 * 120.00174 * 0.02562 * 16 15 14 18 18 C 1.47906 * 120.00081 * 179.97438 * 16 15 14 19 19 C 1.38892 * 121.11125 * 5.67911 * 18 16 15 20 20 C 1.39269 * 119.58141 * 179.97438 * 19 18 16 21 21 N 1.30995 * 121.88311 * 0.02562 * 20 19 18 22 22 C 1.33533 * 121.82828 * 359.97438 * 21 20 19 23 23 C 1.40713 * 120.97583 * 179.97438 * 22 21 20 24 24 C 1.36058 * 119.74618 * 180.02562 * 23 22 21 25 25 C 1.39353 * 121.05210 * 0.02562 * 24 23 22 26 26 C 1.36247 * 120.83919 * 359.97438 * 25 24 23 27 27 C 1.40102 * 119.64346 * 359.73116 * 26 25 24 28 28 C 1.47428 * 125.64189 * 171.96111 * 9 7 2 29 29 H 0.97003 * 119.99712 * 185.01061 * 1 2 3 30 30 H 1.09005 * 109.87958 * 300.44191 * 10 9 7 31 31 H 1.09000 * 109.88092 * 61.60471 * 10 9 7 32 32 H 1.08997 * 110.71876 * 140.55714 * 11 10 9 33 33 H 1.09002 * 110.71682 * 263.64961 * 11 10 9 34 34 H 0.96699 * 114.00378 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47350 * 299.99898 * 14 12 11 36 36 H 1.08997 * 109.47585 * 59.99751 * 14 12 11 37 37 H 0.96995 * 120.00136 * 359.97438 * 15 14 12 38 38 H 1.08008 * 120.20935 * 359.97106 * 19 18 16 39 39 H 1.07999 * 119.06028 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.12550 * 359.97438 * 23 22 21 41 41 H 1.07998 * 119.47617 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.58144 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.17812 * 180.02562 * 26 25 24 44 44 H 1.09002 * 110.36422 * 274.74286 * 28 9 7 45 45 H 1.08997 * 110.36819 * 37.07074 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.6009 1.9869 -1.3950 5 1 1.3996 2.6804 0.5940 6 1 3.4920 1.4724 0.8009 7 6 2.0103 -1.2021 0.0005 8 1 1.5654 -2.0823 0.4406 9 7 3.2592 -1.2718 -0.5568 10 6 3.9150 -0.2042 -1.3261 11 6 5.2912 -0.7408 -1.7730 12 6 5.1006 -2.2794 -1.7126 13 8 4.4669 -2.7640 -2.8981 14 6 6.4361 -2.9887 -1.4791 15 7 6.2176 -4.4364 -1.4273 16 6 7.2593 -5.2684 -1.2297 17 8 8.3798 -4.8177 -1.0939 18 6 7.0387 -6.7300 -1.1768 19 6 5.7904 -7.2775 -1.4434 20 6 5.6186 -8.6583 -1.3850 21 7 6.6047 -9.4661 -1.0836 22 6 7.8311 -9.0109 -0.8156 23 6 8.8774 -9.8949 -0.4932 24 6 10.1173 -9.4038 -0.2240 25 6 10.3717 -8.0342 -0.2613 26 6 9.3834 -7.1484 -0.5695 27 6 8.0959 -7.6195 -0.8583 28 6 4.1713 -2.4274 -0.4794 29 1 -0.4850 -0.8369 0.0734 30 1 3.3133 0.0464 -2.1998 31 1 4.0467 0.6774 -0.6988 32 1 5.5186 -0.4200 -2.7896 33 1 6.0727 -0.4189 -1.0846 34 1 4.3263 -3.7207 -2.9061 35 1 7.1201 -2.7530 -2.2944 36 1 6.8660 -2.6525 -0.5356 37 1 5.3233 -4.7961 -1.5353 38 1 4.9581 -6.6364 -1.6943 39 1 4.6444 -9.0750 -1.5943 40 1 8.6966 -10.9591 -0.4588 41 1 10.9173 -10.0862 0.0225 42 1 11.3648 -7.6702 -0.0431 43 1 9.5925 -6.0891 -0.5957 44 1 4.7518 -2.3914 0.4425 45 1 3.6089 -3.3592 -0.5384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699897818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 17.563454 kcal Electronic energy + Delta-G solvation = -29042.269270 eV Core-core repulsion = 25026.118534 eV Total energy + Delta-G solvation = -4016.150736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47698 -39.93854 -38.72525 -37.45204 -35.56873 -34.50735 -33.78742 -32.41878 -30.93410 -30.62929 -29.90940 -28.71835 -26.41519 -25.05767 -23.93529 -23.48157 -22.62031 -21.31650 -20.64579 -20.25583 -18.70789 -18.16714 -17.76194 -17.50232 -16.63275 -16.20470 -15.85312 -15.63768 -15.29072 -15.05271 -14.81617 -14.65600 -14.51721 -14.23416 -13.80288 -13.67139 -13.53970 -13.47745 -13.18430 -13.03399 -12.35929 -12.14308 -11.99676 -11.91885 -11.72641 -11.40878 -11.26196 -10.99739 -10.88178 -10.82157 -10.62623 -10.29434 -9.91229 -9.63833 -9.58596 -9.45647 -9.20762 -9.17543 -8.61010 -8.44803 -7.14818 -6.38299 -3.20982 -0.28315 0.41862 1.36765 2.42198 2.63574 2.78774 3.40723 3.48504 3.66438 3.77485 3.87050 4.06459 4.18024 4.22993 4.34419 4.46243 4.49448 4.57139 4.73167 4.80906 4.83917 4.96703 5.02794 5.10465 5.15485 5.22017 5.36119 5.38039 5.52590 5.56947 5.66590 5.70699 5.75279 5.92653 5.96265 6.01120 6.05588 6.14217 6.20779 6.24733 6.26658 6.50480 6.51636 6.75777 7.01693 7.46999 7.59520 7.69302 7.77823 8.28843 8.98784 9.54703 10.20048 11.11001 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002426 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.677183 B =11537.612633 C =12196.384855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.068 2.932 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.334 4.334 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.118 3.882 11 C -0.112 4.112 12 C 0.101 3.899 13 O -0.534 6.534 14 C 0.103 3.897 15 N -0.715 5.715 16 C 0.563 3.437 17 O -0.524 6.524 18 C -0.070 4.070 19 C -0.136 4.136 20 C 0.127 3.873 21 N -0.457 5.457 22 C 0.123 3.877 23 C -0.099 4.099 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.101 4.101 27 C -0.065 4.065 28 C 0.116 3.884 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.364 0.636 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.031 0.969 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.895 -17.681 -3.509 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.901 3.099 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.461 4.461 8 H 0.094 0.906 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.150 4.150 12 C 0.059 3.941 13 O -0.338 6.338 14 C -0.021 4.021 15 N -0.367 5.367 16 C 0.350 3.650 17 O -0.402 6.402 18 C -0.082 4.082 19 C -0.157 4.157 20 C -0.045 4.045 21 N -0.166 5.166 22 C 0.002 3.998 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.136 4.136 26 C -0.119 4.119 27 C -0.068 4.068 28 C -0.011 4.011 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.211 0.789 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.236 0.764 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.048 0.952 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.349 -15.955 -3.526 25.325 hybrid contribution -0.245 -1.614 0.244 1.650 sum 19.104 -17.569 -3.282 26.161 Atomic orbital electron populations 1.70930 1.05851 1.30015 1.48700 1.25759 0.96243 1.00881 0.99035 0.83749 0.73759 0.76047 0.76314 1.21977 1.22701 1.22135 1.19960 0.89827 0.97516 1.38804 0.90621 1.44655 1.15449 1.11457 1.61334 1.21656 0.91366 0.92293 0.95345 1.22562 0.98811 0.91247 1.02405 1.22738 0.89622 0.95058 0.86676 1.86655 1.81871 1.26291 1.38961 1.22111 0.98311 0.78145 1.03515 1.45860 1.10395 1.07515 1.72960 1.18007 0.84746 0.85441 0.76804 1.90603 1.22639 1.77377 1.49567 1.20324 0.94118 0.93308 1.00418 1.22480 0.96777 0.97463 0.99011 1.22947 0.98218 0.89398 0.93938 1.67816 0.99528 1.39532 1.09692 1.18905 0.91926 0.90405 0.98591 1.20796 0.91358 0.99665 0.99895 1.21014 0.96817 0.95846 0.98074 1.21127 0.99911 0.93081 0.99456 1.22065 0.90967 1.03317 0.95583 1.18669 0.94619 0.93045 1.00457 1.22196 0.91878 0.92921 0.94058 0.92679 0.93582 0.95187 0.89969 0.89858 0.78922 0.90064 0.89724 0.76431 0.83867 0.81457 0.84538 0.85174 0.85285 0.81413 0.95188 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.70 55.49 0.76 -27.65 16 2 C -0.02 -0.53 5.43 -17.43 -0.09 -0.62 16 3 Si 1.07 26.66 24.65 -169.99 -4.19 22.47 16 4 H -0.29 -6.89 6.69 56.52 0.38 -6.51 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -6.95 6.66 56.52 0.38 -6.57 16 7 C -0.33 -9.42 10.43 -15.06 -0.16 -9.57 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 N -0.60 -14.36 3.31 -169.93 -0.56 -14.92 16 10 C 0.12 2.55 4.90 -3.06 -0.02 2.53 16 11 C -0.11 -1.79 6.15 -24.90 -0.15 -1.94 16 12 C 0.10 1.49 0.97 -88.35 -0.09 1.41 16 13 O -0.53 -7.94 13.21 -35.23 -0.47 -8.40 16 14 C 0.10 1.23 4.89 -4.04 -0.02 1.21 16 15 N -0.71 -7.41 5.16 -61.23 -0.32 -7.72 16 16 C 0.56 6.65 7.75 -12.30 -0.10 6.55 16 17 O -0.52 -7.43 13.52 5.33 0.07 -7.36 16 18 C -0.07 -0.76 5.94 -104.34 -0.62 -1.38 16 19 C -0.14 -1.13 9.60 -38.96 -0.37 -1.50 16 20 C 0.13 1.08 11.14 -17.53 -0.20 0.88 16 21 N -0.46 -4.96 10.30 -11.01 -0.11 -5.07 16 22 C 0.12 1.39 6.61 -84.87 -0.56 0.83 16 23 C -0.10 -0.90 9.98 -39.43 -0.39 -1.30 16 24 C -0.10 -0.76 9.94 -39.95 -0.40 -1.16 16 25 C -0.12 -1.03 9.96 -39.88 -0.40 -1.42 16 26 C -0.10 -1.12 9.25 -39.60 -0.37 -1.49 16 27 C -0.07 -0.76 5.76 -106.52 -0.61 -1.37 16 28 C 0.12 2.13 6.23 -2.41 -0.01 2.12 16 29 H 0.26 8.05 8.73 -40.82 -0.36 7.70 16 30 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 31 H 0.03 0.68 3.87 -51.93 -0.20 0.48 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.36 3.88 7.69 45.56 0.35 4.23 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.40 3.31 5.45 -40.82 -0.22 3.09 16 38 H 0.14 0.76 6.55 -52.48 -0.34 0.41 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.17 2.04 4.98 -52.48 -0.26 1.78 16 44 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -35.90 362.97 -8.81 -44.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.91 Total: 4.73 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.55 Total: -6.25 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.23 Total: -55.37 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.39 Total: -15.76 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.19 Total: 22.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.90 -8.81 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699897818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.271 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds