Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99296 * 2 1 4 4 H 1.48501 * 109.46987 * 265.10456 * 3 2 1 5 5 H 1.48494 * 109.47568 * 25.10781 * 3 2 1 6 6 H 1.48498 * 109.46652 * 145.10682 * 3 2 1 7 7 C 1.38810 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 331.96390 * 7 2 1 9 9 N 1.36939 * 119.99437 * 151.96766 * 7 2 1 10 10 C 1.47022 * 125.65278 * 352.26799 * 9 7 2 11 11 C 1.54322 * 107.26896 * 181.02445 * 10 9 7 12 12 C 1.55154 * 102.94377 * 22.19334 * 11 10 9 13 13 O 1.42894 * 111.00715 * 82.57439 * 12 11 10 14 14 C 1.53002 * 111.00225 * 206.38604 * 12 11 10 15 15 N 1.46503 * 109.47113 * 179.97438 * 14 12 11 16 16 C 1.34774 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21541 * 120.00174 * 0.02562 * 16 15 14 18 18 C 1.47906 * 120.00081 * 179.97438 * 16 15 14 19 19 C 1.38892 * 121.11125 * 5.67911 * 18 16 15 20 20 C 1.39269 * 119.58141 * 179.97438 * 19 18 16 21 21 N 1.30995 * 121.88311 * 0.02562 * 20 19 18 22 22 C 1.33533 * 121.82828 * 359.97438 * 21 20 19 23 23 C 1.40713 * 120.97583 * 179.97438 * 22 21 20 24 24 C 1.36058 * 119.74618 * 180.02562 * 23 22 21 25 25 C 1.39353 * 121.05210 * 0.02562 * 24 23 22 26 26 C 1.36247 * 120.83919 * 359.97438 * 25 24 23 27 27 C 1.40102 * 119.64346 * 359.73116 * 26 25 24 28 28 C 1.47428 * 125.64189 * 171.96111 * 9 7 2 29 29 H 0.97003 * 119.99712 * 185.01061 * 1 2 3 30 30 H 1.09005 * 109.87958 * 300.44191 * 10 9 7 31 31 H 1.09000 * 109.88092 * 61.60471 * 10 9 7 32 32 H 1.08997 * 110.71876 * 140.55714 * 11 10 9 33 33 H 1.09002 * 110.71682 * 263.64961 * 11 10 9 34 34 H 0.96699 * 114.00378 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47350 * 299.99898 * 14 12 11 36 36 H 1.08997 * 109.47585 * 59.99751 * 14 12 11 37 37 H 0.96995 * 120.00136 * 359.97438 * 15 14 12 38 38 H 1.08008 * 120.20935 * 359.97106 * 19 18 16 39 39 H 1.07999 * 119.06028 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.12550 * 359.97438 * 23 22 21 41 41 H 1.07998 * 119.47617 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.58144 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.17812 * 180.02562 * 26 25 24 44 44 H 1.09002 * 110.36422 * 274.74286 * 28 9 7 45 45 H 1.08997 * 110.36819 * 37.07074 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.6009 1.9869 -1.3950 5 1 1.3996 2.6804 0.5940 6 1 3.4920 1.4724 0.8009 7 6 2.0103 -1.2021 0.0005 8 1 1.5654 -2.0823 0.4406 9 7 3.2592 -1.2718 -0.5568 10 6 3.9150 -0.2042 -1.3261 11 6 5.2912 -0.7408 -1.7730 12 6 5.1006 -2.2794 -1.7126 13 8 4.4669 -2.7640 -2.8981 14 6 6.4361 -2.9887 -1.4791 15 7 6.2176 -4.4364 -1.4273 16 6 7.2593 -5.2684 -1.2297 17 8 8.3798 -4.8177 -1.0939 18 6 7.0387 -6.7300 -1.1768 19 6 5.7904 -7.2775 -1.4434 20 6 5.6186 -8.6583 -1.3850 21 7 6.6047 -9.4661 -1.0836 22 6 7.8311 -9.0109 -0.8156 23 6 8.8774 -9.8949 -0.4932 24 6 10.1173 -9.4038 -0.2240 25 6 10.3717 -8.0342 -0.2613 26 6 9.3834 -7.1484 -0.5695 27 6 8.0959 -7.6195 -0.8583 28 6 4.1713 -2.4274 -0.4794 29 1 -0.4850 -0.8369 0.0734 30 1 3.3133 0.0464 -2.1998 31 1 4.0467 0.6774 -0.6988 32 1 5.5186 -0.4200 -2.7896 33 1 6.0727 -0.4189 -1.0846 34 1 4.3263 -3.7207 -2.9061 35 1 7.1201 -2.7530 -2.2944 36 1 6.8660 -2.6525 -0.5356 37 1 5.3233 -4.7961 -1.5353 38 1 4.9581 -6.6364 -1.6943 39 1 4.6444 -9.0750 -1.5943 40 1 8.6966 -10.9591 -0.4588 41 1 10.9173 -10.0862 0.0225 42 1 11.3648 -7.6702 -0.0431 43 1 9.5925 -6.0891 -0.5957 44 1 4.7518 -2.3914 0.4425 45 1 3.6089 -3.3592 -0.5384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699897818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -10.407992 kcal Electronic energy + Delta-G solvation = -29043.482203 eV Core-core repulsion = 25026.118534 eV Total energy + Delta-G solvation = -4017.363669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22629 -40.94468 -39.90529 -38.12269 -37.03635 -35.51392 -34.56532 -34.34566 -31.88031 -31.55909 -31.07497 -30.04325 -27.74159 -26.10345 -24.85702 -24.57796 -23.53993 -22.73194 -21.87364 -21.51193 -19.64742 -19.39332 -18.89564 -18.48850 -17.78034 -17.14607 -17.06280 -16.59795 -16.37717 -16.23933 -15.77633 -15.58170 -15.54535 -15.37148 -15.12712 -14.89196 -14.72771 -14.59278 -14.23139 -14.11612 -13.59359 -13.40645 -13.12801 -12.90340 -12.81862 -12.71673 -12.65989 -12.35858 -12.21293 -11.89679 -11.65772 -11.60264 -11.48663 -11.24134 -10.99906 -10.56030 -10.40664 -10.36142 -9.84345 -9.32504 -9.16143 -8.65317 -5.40382 -1.00260 -0.25933 0.62755 1.39873 1.50605 1.66408 1.69282 1.77162 2.04073 2.51877 2.96990 3.04789 3.07067 3.23571 3.27759 3.33281 3.50944 3.59954 3.64025 3.69312 3.78297 3.83043 4.14471 4.19346 4.28980 4.35021 4.38575 4.50454 4.51802 4.58616 4.69191 4.70334 4.73169 4.81259 4.86578 4.94502 5.03211 5.06719 5.17987 5.22328 5.32329 5.45287 5.52679 5.55977 5.85621 6.09867 6.19351 6.69840 6.77243 6.82211 6.91894 7.48263 8.11665 8.84631 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002426 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.677183 B =11537.612633 C =12196.384855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.078 4.078 3 Si 1.108 2.892 4 H -0.273 1.273 5 H -0.307 1.307 6 H -0.273 1.273 7 C -0.320 4.320 8 H 0.048 0.952 9 N -0.624 5.624 10 C 0.108 3.892 11 C -0.107 4.107 12 C 0.121 3.879 13 O -0.549 6.549 14 C 0.116 3.884 15 N -0.706 5.706 16 C 0.565 3.435 17 O -0.552 6.552 18 C -0.092 4.092 19 C -0.123 4.123 20 C 0.123 3.877 21 N -0.476 5.476 22 C 0.100 3.900 23 C -0.108 4.108 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.085 4.085 28 C 0.108 3.892 29 H 0.249 0.751 30 H 0.022 0.978 31 H 0.027 0.973 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.383 0.617 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.410 0.590 38 H 0.174 0.826 39 H 0.201 0.799 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.039 0.961 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.268 -18.645 -4.164 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.272 4.272 3 Si 0.936 3.064 4 H -0.199 1.199 5 H -0.236 1.236 6 H -0.199 1.199 7 C -0.448 4.448 8 H 0.066 0.934 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.145 4.145 12 C 0.079 3.921 13 O -0.356 6.356 14 C -0.008 4.008 15 N -0.359 5.359 16 C 0.353 3.647 17 O -0.431 6.431 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.049 4.049 21 N -0.185 5.185 22 C -0.021 4.021 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.146 4.146 27 C -0.088 4.088 28 C -0.017 4.017 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.191 0.809 39 H 0.218 0.782 40 H 0.168 0.832 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.056 0.944 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 21.758 -16.973 -4.196 27.913 hybrid contribution -1.002 -1.493 0.452 1.854 sum 20.756 -18.466 -3.744 28.033 Atomic orbital electron populations 1.71039 1.07067 1.29223 1.52297 1.26954 0.96306 1.04350 0.99636 0.83241 0.73244 0.72382 0.77574 1.19937 1.23574 1.19937 1.19894 0.91718 0.96269 1.36962 0.93361 1.44748 1.15126 1.13995 1.61292 1.21783 0.93870 0.92027 0.94004 1.22614 0.96078 0.91685 1.04123 1.22447 0.89811 0.94924 0.84900 1.86626 1.82040 1.28235 1.38678 1.21890 0.96373 0.78560 1.03957 1.45715 1.10745 1.06848 1.72595 1.18148 0.84425 0.85932 0.76193 1.90598 1.23753 1.77905 1.50879 1.20332 0.95145 0.92643 1.02249 1.22828 0.96623 0.97902 0.96975 1.23557 0.99009 0.89508 0.92834 1.67857 0.99898 1.40337 1.10366 1.19217 0.92730 0.90632 0.99550 1.21102 0.91543 1.00251 0.99749 1.21365 0.97230 0.95894 0.96767 1.21455 1.00356 0.93395 0.97805 1.22036 0.91794 1.03067 0.97737 1.18879 0.95168 0.93612 1.01151 1.22467 0.91832 0.91109 0.96300 0.94163 0.95975 0.95523 0.88030 0.87083 0.76796 0.89125 0.89613 0.75198 0.80854 0.78224 0.83178 0.81843 0.83055 0.82912 0.94370 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.70 21.65 0.30 -60.77 16 2 C -0.08 -4.64 5.43 84.86 0.46 -4.18 16 3 Si 1.11 53.95 24.65 68.60 1.69 55.64 16 4 H -0.27 -12.32 6.69 99.48 0.67 -11.65 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.52 16 6 H -0.27 -12.20 6.66 99.48 0.66 -11.53 16 7 C -0.32 -18.28 10.43 84.03 0.88 -17.41 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 9 N -0.62 -29.23 3.31 -691.54 -2.29 -31.52 16 10 C 0.11 4.44 4.90 86.73 0.43 4.87 16 11 C -0.11 -3.06 6.15 31.78 0.20 -2.87 16 12 C 0.12 3.21 0.97 -9.32 -0.01 3.20 16 13 O -0.55 -14.74 13.21 -148.98 -1.97 -16.71 16 14 C 0.12 2.42 4.89 86.38 0.42 2.84 16 15 N -0.71 -12.88 5.16 -465.91 -2.40 -15.28 16 16 C 0.57 12.60 7.75 86.80 0.67 13.27 16 17 O -0.55 -15.30 13.52 -3.84 -0.05 -15.35 16 18 C -0.09 -1.91 5.94 -19.68 -0.12 -2.02 16 19 C -0.12 -1.78 9.60 22.67 0.22 -1.56 16 20 C 0.12 1.84 11.14 85.07 0.95 2.79 16 21 N -0.48 -9.78 10.30 -188.73 -1.94 -11.72 16 22 C 0.10 2.18 6.61 40.35 0.27 2.44 16 23 C -0.11 -1.85 9.98 22.37 0.22 -1.63 16 24 C -0.09 -1.27 9.94 22.03 0.22 -1.05 16 25 C -0.11 -1.82 9.96 22.07 0.22 -1.60 16 26 C -0.13 -2.84 9.25 22.26 0.21 -2.63 16 27 C -0.09 -1.97 5.76 -21.09 -0.12 -2.09 16 28 C 0.11 3.76 6.23 86.93 0.54 4.30 16 29 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 30 H 0.02 1.01 7.65 -2.38 -0.02 0.99 16 31 H 0.03 1.14 3.87 -2.39 -0.01 1.13 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.11 2.58 8.04 -2.39 -0.02 2.56 16 34 H 0.38 6.95 7.69 -74.06 -0.57 6.38 16 35 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 1.84 8.07 -2.39 -0.02 1.82 16 37 H 0.41 5.60 5.45 -92.71 -0.51 5.09 16 38 H 0.17 1.27 6.55 -2.91 -0.02 1.25 16 39 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 3.81 4.98 -2.91 -0.01 3.80 16 44 H 0.04 1.30 7.99 -2.39 -0.02 1.28 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -81.14 362.97 -1.16 -82.31 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.14 Total: 16.73 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.65 Total: -3.33 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -6.34 Total: -119.29 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -2.02 Total: -32.06 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.69 Total: 55.64 kcal Total: -81.14 -1.16 -82.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699897818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.899 kcal (2) G-P(sol) polarization free energy of solvation -81.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds